Wall clock time and date at job start Sat Mar 6 2021 21:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00265 * 2 1 4 4 H 1.09011 * 112.84518 * 341.20135 * 3 2 1 5 5 C 1.53780 * 113.61277 * 112.49963 * 3 2 1 6 6 C 1.53788 * 87.07795 * 139.98771 * 5 3 2 7 7 H 1.08997 * 113.69034 * 220.01195 * 6 5 3 8 8 N 1.46494 * 113.61224 * 89.12027 * 6 5 3 9 9 C 1.34774 * 120.00292 * 107.50389 * 8 6 5 10 10 O 1.21284 * 119.99861 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00365 * 179.97438 * 9 8 6 12 12 N 1.46498 * 109.47489 * 179.97438 * 11 9 8 13 13 C 1.35046 * 125.92725 * 124.99951 * 12 11 9 14 14 C 1.35088 * 107.97540 * 180.02562 * 13 12 11 15 15 C 1.50695 * 126.07243 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.47088 * 254.97387 * 15 14 13 17 17 Si 1.86295 * 109.47203 * 14.97287 * 15 14 13 18 18 C 1.40844 * 107.85148 * 0.02562 * 14 13 12 19 19 C 1.48424 * 126.03844 * 180.02562 * 18 14 13 20 20 C 1.39320 * 120.11866 * 145.00087 * 19 18 14 21 21 C 1.38019 * 119.88095 * 180.02562 * 20 19 18 22 22 C 1.38325 * 120.11832 * 359.97438 * 21 20 19 23 23 C 1.38323 * 120.23744 * 0.02562 * 22 21 20 24 24 C 1.38022 * 120.12002 * 0.02562 * 23 22 21 25 25 N 1.31623 * 107.92657 * 0.26270 * 18 14 13 26 26 C 1.53778 * 113.61968 * 210.00268 * 3 2 1 27 27 H 1.08999 * 109.47343 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47391 * 299.99593 * 1 2 3 29 29 H 1.09003 * 109.47503 * 59.99576 * 1 2 3 30 30 H 1.09003 * 113.61344 * 25.44243 * 5 3 2 31 31 H 1.08994 * 113.61935 * 254.53197 * 5 3 2 32 32 H 0.97002 * 119.99944 * 287.49688 * 8 6 5 33 33 H 1.09006 * 109.46767 * 60.00424 * 11 9 8 34 34 H 1.08998 * 109.47503 * 300.00314 * 11 9 8 35 35 H 1.07992 * 126.00861 * 0.03022 * 13 12 11 36 36 H 1.08995 * 109.47209 * 134.97497 * 15 14 13 37 37 H 0.96699 * 113.99745 * 59.99931 * 16 15 14 38 38 H 1.48505 * 110.00265 * 179.97438 * 17 15 14 39 39 H 1.48495 * 110.00269 * 301.32111 * 17 15 14 40 40 H 1.08000 * 120.06342 * 0.03949 * 20 19 18 41 41 H 1.08006 * 119.94549 * 180.02562 * 21 20 19 42 42 H 1.07994 * 119.87991 * 179.72372 * 22 21 20 43 43 H 1.08001 * 119.93381 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.05424 * 180.02562 * 24 23 22 45 45 H 1.08997 * 113.61068 * 105.47010 * 26 3 2 46 46 H 1.08993 * 113.61425 * 334.57158 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3136 2.0789 -0.3237 5 6 2.7534 1.6488 1.3018 6 6 3.8226 2.3182 0.4222 7 1 4.8430 2.1409 0.7620 8 7 3.5531 3.7309 0.1438 9 6 4.2933 4.6880 0.7376 10 8 5.1823 4.3796 1.5028 11 6 4.0165 6.1413 0.4507 12 7 4.9488 6.9758 1.2127 13 6 5.7693 7.9181 0.7003 14 6 6.4671 8.4628 1.7207 15 6 7.4990 9.5551 1.6066 16 8 8.8048 8.9945 1.7579 17 14 7.3616 10.3670 -0.0645 18 6 6.0589 7.8284 2.9101 19 6 6.5689 8.1180 4.2736 20 6 5.7140 8.0399 5.3709 21 6 6.1932 8.3107 6.6365 22 6 7.5198 8.6586 6.8167 23 6 8.3729 8.7375 5.7307 24 6 7.9038 8.4698 4.4605 25 7 5.1491 6.9298 2.5983 26 6 3.3755 1.3720 -0.7045 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.1166 0.7739 1.8410 31 1 2.2141 2.3476 1.9412 32 1 2.8420 3.9776 -0.4681 33 1 2.9937 6.3807 0.7421 34 1 4.1448 6.3323 -0.6147 35 1 5.8528 8.1886 -0.3419 36 1 7.3298 10.2976 2.3864 37 1 9.0242 8.3244 1.0962 38 1 8.3737 11.4467 -0.1894 39 1 7.5588 9.3589 -1.1368 40 1 4.6782 7.7678 5.2314 41 1 5.5315 8.2502 7.4880 42 1 7.8897 8.8740 7.8082 43 1 9.4079 9.0091 5.8770 44 1 8.5709 8.5313 3.6134 45 1 3.3382 1.8472 -1.6847 46 1 3.9087 0.4214 -0.7139 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_12622748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:11:04 Heat of formation + Delta-G solvation = 35.392549 kcal Electronic energy + Delta-G solvation = -29445.508768 eV Core-core repulsion = 25305.101019 eV Total energy + Delta-G solvation = -4140.407749 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50696 -41.36354 -39.96664 -39.62903 -37.89841 -37.35021 -34.85062 -34.05080 -32.29859 -31.86131 -31.40931 -28.90507 -27.73753 -26.81876 -26.05712 -25.13875 -24.07110 -23.48808 -22.18397 -21.48836 -20.99296 -20.68684 -18.80240 -18.61225 -17.83824 -17.73196 -17.27071 -16.84447 -16.64618 -16.58018 -16.25099 -16.15164 -15.91124 -15.83491 -15.49691 -15.37258 -14.89862 -14.51613 -14.30883 -14.22546 -14.11426 -13.87709 -13.69066 -13.65600 -13.54220 -13.41068 -13.20941 -12.54168 -12.39043 -12.20776 -12.14431 -11.99695 -11.69201 -11.61122 -11.59057 -11.33648 -10.68351 -10.50642 -10.40215 -10.21949 -9.87367 -9.76056 -9.29197 -4.82899 0.07112 0.47531 0.80846 1.29287 1.41421 1.43343 1.66276 1.71297 2.00001 2.06200 2.84546 2.90242 3.34005 3.39611 3.46437 3.48023 3.55257 3.69949 3.77984 3.90768 3.93747 4.03326 4.12834 4.13104 4.18928 4.33891 4.34352 4.45935 4.46340 4.52799 4.53218 4.61378 4.68693 4.70819 4.80251 4.82926 4.87565 4.89137 4.89956 4.95207 5.00345 5.17653 5.31481 5.40849 5.57191 5.61785 5.64446 5.91151 6.05878 6.25448 6.39931 6.57602 6.61604 7.11067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.065 3.935 4 H 0.113 0.887 5 C -0.171 4.171 6 C 0.122 3.878 7 H 0.082 0.918 8 N -0.694 5.694 9 C 0.497 3.503 10 O -0.566 6.566 11 C 0.111 3.889 12 N -0.360 5.360 13 C 0.075 3.925 14 C -0.262 4.262 15 C -0.052 4.052 16 O -0.546 6.546 17 Si 0.786 3.214 18 C 0.110 3.890 19 C -0.037 4.037 20 C -0.109 4.109 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.132 4.132 24 C -0.113 4.113 25 N -0.295 5.295 26 C -0.131 4.131 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.423 0.577 33 H 0.147 0.853 34 H 0.182 0.818 35 H 0.220 0.780 36 H 0.105 0.895 37 H 0.383 0.617 38 H -0.306 1.306 39 H -0.262 1.262 40 H 0.118 0.882 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.152 0.848 45 H 0.102 0.898 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 2.639 -7.917 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.007 3.993 4 H 0.130 0.870 5 C -0.210 4.210 6 C 0.016 3.984 7 H 0.100 0.900 8 N -0.348 5.348 9 C 0.283 3.717 10 O -0.443 6.443 11 C -0.012 4.012 12 N -0.141 5.141 13 C -0.070 4.070 14 C -0.273 4.273 15 C -0.161 4.161 16 O -0.355 6.355 17 Si 0.689 3.311 18 C -0.055 4.055 19 C -0.039 4.039 20 C -0.128 4.128 21 C -0.149 4.149 22 C -0.135 4.135 23 C -0.150 4.150 24 C -0.132 4.132 25 N -0.116 5.116 26 C -0.169 4.169 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.261 0.739 33 H 0.164 0.836 34 H 0.199 0.801 35 H 0.236 0.764 36 H 0.123 0.877 37 H 0.233 0.767 38 H -0.234 1.234 39 H -0.187 1.187 40 H 0.136 0.864 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.120 0.880 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.900 1.814 -7.311 10.215 hybrid contribution 0.871 -0.482 0.142 1.005 sum -6.029 1.332 -7.169 9.462 Atomic orbital electron populations 1.22956 0.79776 1.03650 1.00891 1.87930 1.21279 1.28314 1.94609 1.23935 0.94293 0.85565 0.95527 0.86964 1.23965 0.98169 1.00772 0.98101 1.21476 0.98971 0.80466 0.97492 0.89985 1.45413 1.37225 1.04422 1.47786 1.21216 0.81464 0.89039 0.80006 1.90838 1.33421 1.83567 1.36447 1.22013 0.94915 0.84894 0.99381 1.48142 1.32323 1.29101 1.04549 1.22858 0.92015 0.91224 1.00883 1.20559 1.07641 1.07528 0.91600 1.24642 0.80258 0.96023 1.15147 1.86453 1.32476 1.59677 1.56879 0.94042 0.88001 0.77702 0.71392 1.20854 0.95799 0.94791 0.94079 1.18043 0.94244 1.02202 0.89430 1.21318 0.99644 0.99266 0.92610 1.21358 0.96585 0.99938 0.96985 1.21592 0.93567 0.98380 0.99986 1.21413 1.00909 1.00360 0.92274 1.22003 0.94705 0.97213 0.99312 1.77699 1.20818 1.20912 0.92175 1.23531 0.95150 0.99746 0.98499 0.89280 0.93568 0.92375 0.89688 0.91232 0.73891 0.83575 0.80075 0.76362 0.87698 0.76700 1.23425 1.18733 0.86356 0.83976 0.83693 0.84186 0.83074 0.87968 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.40 -0.77 10.71 -148.98 -1.60 -2.37 16 3 C 0.06 -0.21 4.19 31.12 0.13 -0.08 16 4 H 0.11 -0.98 7.87 -2.38 -0.02 -1.00 16 5 C -0.17 -0.05 7.71 31.12 0.24 0.19 16 6 C 0.12 -0.11 4.32 45.52 0.20 0.08 16 7 H 0.08 0.45 7.46 -2.39 -0.02 0.43 16 8 N -0.69 4.00 5.26 -440.04 -2.32 1.69 16 9 C 0.50 0.33 7.86 87.66 0.69 1.02 16 10 O -0.57 -8.00 15.29 -3.04 -0.05 -8.04 16 11 C 0.11 -0.85 6.99 85.63 0.60 -0.25 16 12 N -0.36 -0.77 3.41 -351.91 -1.20 -1.97 16 13 C 0.08 -0.12 9.96 83.47 0.83 0.71 16 14 C -0.26 -1.02 5.34 -19.95 -0.11 -1.12 16 15 C -0.05 -0.07 2.00 71.23 0.14 0.07 16 16 O -0.55 -2.01 10.10 -148.98 -1.50 -3.52 16 17 Si 0.79 -3.26 30.80 68.60 2.11 -1.15 16 18 C 0.11 1.20 6.74 42.53 0.29 1.49 16 19 C -0.04 -0.44 5.80 -20.04 -0.12 -0.56 16 20 C -0.11 -1.15 9.75 22.48 0.22 -0.93 16 21 C -0.13 -0.89 10.03 22.24 0.22 -0.67 16 22 C -0.12 -0.65 10.04 22.31 0.22 -0.43 16 23 C -0.13 -0.94 10.03 22.24 0.22 -0.71 16 24 C -0.11 -1.15 8.94 22.48 0.20 -0.95 16 25 N -0.29 -3.50 11.62 -48.15 -0.56 -4.06 16 26 C -0.13 0.57 7.66 31.12 0.24 0.81 16 27 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.42 -6.09 8.70 -92.71 -0.81 -6.89 16 33 H 0.15 -1.87 8.14 -2.38 -0.02 -1.89 16 34 H 0.18 -3.35 8.07 -2.39 -0.02 -3.37 16 35 H 0.22 -2.43 6.33 -2.91 -0.02 -2.45 16 36 H 0.11 0.28 7.83 -2.39 -0.02 0.26 16 37 H 0.38 -0.63 8.70 -74.06 -0.64 -1.27 16 38 H -0.31 -1.34 7.11 99.48 0.71 -0.63 16 39 H -0.26 0.99 6.99 99.48 0.70 1.68 16 40 H 0.12 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.14 0.30 8.06 -2.91 -0.02 0.27 16 42 H 0.15 0.04 8.06 -2.91 -0.02 0.02 16 43 H 0.14 0.41 8.06 -2.91 -0.02 0.39 16 44 H 0.15 1.47 4.50 -2.91 -0.01 1.46 16 45 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 46 H 0.10 -0.19 8.14 -2.39 -0.02 -0.20 16 Total: 0.00 -33.11 386.32 -0.06 -33.17 By element: Atomic # 1 Polarization: -13.18 SS G_CDS: -0.40 Total: -13.59 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 5.45 Total: -0.17 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -4.07 Total: -4.34 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -3.15 Total: -13.92 kcal Atomic # 14 Polarization: -3.26 SS G_CDS: 2.11 Total: -1.15 kcal Total: -33.11 -0.06 -33.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_12622748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.565 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds