Wall clock time and date at job start Sat Mar 6 2021 21:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00081 * 2 1 4 4 H 1.08995 * 112.84984 * 18.80016 * 3 2 1 5 5 C 1.53785 * 113.61746 * 149.99888 * 3 2 1 6 6 C 1.53779 * 87.08218 * 89.11394 * 5 3 2 7 7 H 1.08999 * 113.61760 * 270.80162 * 6 5 3 8 8 N 1.46494 * 113.61549 * 139.98241 * 6 5 3 9 9 C 1.34771 * 120.00308 * 154.99935 * 8 6 5 10 10 O 1.21573 * 119.99821 * 0.02562 * 9 8 6 11 11 C 1.47721 * 120.00515 * 180.02562 * 9 8 6 12 12 C 1.39703 * 120.02836 * 179.97438 * 11 9 8 13 13 C 1.37666 * 119.97595 * 180.02562 * 12 11 9 14 14 C 1.39502 * 120.02348 * 0.02818 * 13 12 11 15 15 C 1.48277 * 119.97511 * 179.97438 * 14 13 12 16 16 C 1.39407 * 120.12874 * 179.97438 * 15 14 13 17 17 C 1.37999 * 119.87420 * 180.30343 * 16 15 14 18 18 C 1.38341 * 120.12317 * 359.43918 * 17 16 15 19 19 C 1.50703 * 119.87154 * 180.28030 * 18 17 16 20 20 O 1.42888 * 109.47231 * 245.28020 * 19 18 17 21 21 Si 1.86305 * 109.46828 * 5.28183 * 19 18 17 22 22 C 1.38333 * 120.25645 * 0.56382 * 18 17 16 23 23 C 1.37996 * 120.12923 * 359.71608 * 22 18 17 24 24 C 1.39499 * 120.05028 * 0.22697 * 14 13 12 25 25 C 1.37671 * 120.02518 * 359.48917 * 24 14 13 26 26 C 1.53783 * 87.08072 * 25.43463 * 6 5 3 27 27 H 1.08997 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47532 * 300.00440 * 1 2 3 29 29 H 1.08999 * 109.47102 * 60.00545 * 1 2 3 30 30 H 1.08998 * 113.61141 * 334.56567 * 5 3 2 31 31 H 1.08996 * 113.68971 * 203.67835 * 5 3 2 32 32 H 0.97002 * 119.99604 * 334.99933 * 8 6 5 33 33 H 1.07997 * 120.01582 * 0.02562 * 12 11 9 34 34 H 1.07998 * 119.98612 * 180.02562 * 13 12 11 35 35 H 1.08002 * 120.05963 * 0.02562 * 16 15 14 36 36 H 1.07998 * 119.93991 * 179.72489 * 17 16 15 37 37 H 1.08997 * 109.46588 * 125.27894 * 19 18 17 38 38 H 0.96701 * 113.99981 * 180.02562 * 20 19 18 39 39 H 1.48504 * 109.99522 * 178.67913 * 21 19 18 40 40 H 1.48493 * 109.99831 * 299.99741 * 21 19 18 41 41 H 1.08004 * 119.93400 * 179.69927 * 22 18 17 42 42 H 1.08002 * 120.06966 * 179.97438 * 23 22 18 43 43 H 1.07999 * 119.99014 * 179.74821 * 24 14 13 44 44 H 1.07996 * 120.01199 * 180.22954 * 25 24 14 45 45 H 1.08997 * 113.61302 * 89.11345 * 26 6 5 46 46 H 1.08999 * 113.60933 * 220.01947 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0788 0.3237 5 6 3.3755 1.3719 0.7045 6 6 4.0061 1.0330 -0.6564 7 1 4.1098 -0.0372 -0.8353 8 7 5.2363 1.7781 -0.9350 9 6 6.1522 1.2731 -1.7851 10 8 5.9572 0.1994 -2.3210 11 6 7.3929 2.0240 -2.0656 12 6 8.3429 1.5008 -2.9462 13 6 9.4991 2.2013 -3.2065 14 6 9.7225 3.4330 -2.5908 15 6 10.9684 4.1863 -2.8714 16 6 11.1947 5.4177 -2.2583 17 6 12.3532 6.1173 -2.5282 18 6 13.2944 5.5935 -3.3963 19 6 14.5604 6.3594 -3.6820 20 8 14.5794 6.7529 -5.0555 21 14 14.6266 7.8751 -2.6007 22 6 13.0752 4.3721 -4.0076 23 6 11.9178 3.6662 -3.7498 24 6 8.7771 3.9540 -1.7072 25 6 7.6175 3.2579 -1.4499 26 6 2.7535 1.6488 -1.3017 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 3.5169 0.5958 1.4567 31 1 3.6322 2.3665 1.0692 32 1 5.3917 2.6349 -0.5077 33 1 8.1704 0.5470 -3.4227 34 1 10.2333 1.7971 -3.8875 35 1 10.4627 5.8255 -1.5769 36 1 12.5276 7.0734 -2.0572 37 1 15.4229 5.7263 -3.4734 38 1 15.3678 7.2511 -5.3110 39 1 15.8856 8.6222 -2.8500 40 1 13.4560 8.7464 -2.8754 41 1 13.8113 3.9702 -4.6882 42 1 11.7475 2.7129 -4.2279 43 1 8.9529 4.9057 -1.2279 44 1 6.8840 3.6632 -0.7687 45 1 2.8390 2.7197 -1.4862 46 1 2.3928 1.0962 -2.1693 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_13158362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:11:17 Heat of formation + Delta-G solvation = -21.283529 kcal Electronic energy + Delta-G solvation = -27387.591357 eV Core-core repulsion = 23402.889250 eV Total energy + Delta-G solvation = -3984.702108 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.61137 -40.89447 -40.13325 -39.08965 -37.66791 -37.17070 -34.63601 -33.78760 -32.55762 -31.56648 -30.85802 -27.74974 -27.12581 -26.74083 -25.53617 -24.63944 -24.01361 -22.57324 -22.22266 -21.32524 -20.92591 -19.14767 -18.57426 -18.13552 -18.05218 -17.04466 -16.91868 -16.68018 -16.51933 -16.29962 -15.87657 -15.70530 -15.64210 -15.42171 -15.00163 -14.89449 -14.79215 -14.65725 -14.33263 -14.05660 -13.98514 -13.73011 -13.56680 -13.37169 -13.21879 -13.14304 -12.90741 -12.52183 -12.42204 -12.08285 -12.01878 -11.90818 -11.61192 -11.45303 -11.08295 -10.77131 -10.53836 -10.46547 -10.12586 -10.06024 -9.95217 -9.07004 -4.92890 -0.69188 0.35289 0.40728 0.49617 1.29509 1.60020 1.76545 1.94271 2.07395 2.57785 2.69190 2.98717 3.36608 3.43878 3.48232 3.58135 3.63787 3.70709 3.81391 3.86285 3.88259 3.99999 4.05895 4.07765 4.25094 4.28465 4.31178 4.36608 4.44230 4.50168 4.54193 4.65194 4.67383 4.68152 4.80054 4.83361 4.90143 4.90825 4.93769 4.99686 5.02329 5.08659 5.13685 5.20695 5.27782 5.41257 5.45217 5.50885 5.65573 5.79943 5.92879 6.25700 6.46017 6.56730 7.12702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.061 3.939 4 H 0.105 0.895 5 C -0.133 4.133 6 C 0.119 3.881 7 H 0.084 0.916 8 N -0.699 5.699 9 C 0.554 3.446 10 O -0.586 6.586 11 C -0.153 4.153 12 C -0.072 4.072 13 C -0.125 4.125 14 C -0.021 4.021 15 C -0.061 4.061 16 C -0.100 4.100 17 C -0.122 4.122 18 C -0.081 4.081 19 C -0.090 4.090 20 O -0.559 6.559 21 Si 0.767 3.233 22 C -0.104 4.104 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.071 4.071 26 C -0.168 4.168 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.417 0.583 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.395 0.605 39 H -0.289 1.289 40 H -0.296 1.296 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.115 0.885 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 6.382 6.153 8.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.003 3.997 4 H 0.123 0.877 5 C -0.171 4.171 6 C 0.014 3.986 7 H 0.102 0.898 8 N -0.351 5.351 9 C 0.343 3.657 10 O -0.467 6.467 11 C -0.156 4.156 12 C -0.091 4.091 13 C -0.143 4.143 14 C -0.022 4.022 15 C -0.061 4.061 16 C -0.118 4.118 17 C -0.139 4.139 18 C -0.082 4.082 19 C -0.198 4.198 20 O -0.369 6.369 21 Si 0.672 3.328 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.090 4.090 26 C -0.207 4.207 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.149 0.851 32 H 0.257 0.743 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.175 0.825 36 H 0.162 0.838 37 H 0.112 0.888 38 H 0.245 0.755 39 H -0.216 1.216 40 H -0.223 1.223 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.180 0.820 44 H 0.180 0.820 45 H 0.133 0.867 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.183 6.003 5.829 8.370 hybrid contribution 0.468 0.150 -1.550 1.626 sum 0.285 6.152 4.279 7.500 Atomic orbital electron populations 1.22975 0.79330 1.03683 1.01060 1.87871 1.21556 1.27741 1.94665 1.23012 0.94993 0.85549 0.96154 0.87672 1.23632 0.93179 1.04729 0.95554 1.22482 0.82203 0.96578 0.97352 0.89803 1.45780 1.19225 1.24405 1.45672 1.18674 0.83770 0.84684 0.78541 1.90774 1.79348 1.24083 1.52536 1.19992 0.95347 0.97497 1.02720 1.21231 0.92794 0.99583 0.95523 1.21351 0.97520 0.94628 1.00765 1.19141 0.93479 0.93669 0.95889 1.18940 0.93618 0.95223 0.98306 1.21484 0.97539 0.93395 0.99342 1.21171 0.93795 1.00333 0.98650 1.19625 0.95649 0.95152 0.97726 1.25084 0.98249 1.07717 0.88792 1.86547 1.48595 1.76632 1.25158 0.94118 0.76337 0.74795 0.87529 1.21091 0.97707 0.94513 0.98930 1.21509 0.93464 1.00554 0.97612 1.21512 0.92842 1.01356 0.97752 1.21503 0.97809 0.92045 0.97621 1.24007 0.95802 1.02666 0.98185 0.89173 0.92360 0.93300 0.90364 0.85090 0.74335 0.85817 0.83957 0.82475 0.83839 0.88822 0.75499 1.21612 1.22312 0.85231 0.84384 0.81969 0.82003 0.86681 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.40 -1.76 10.63 -148.98 -1.58 -3.34 16 3 C 0.06 -0.08 4.38 31.12 0.14 0.05 16 4 H 0.11 -0.64 7.87 -2.39 -0.02 -0.66 16 5 C -0.13 0.46 7.66 31.12 0.24 0.70 16 6 C 0.12 0.30 4.17 45.52 0.19 0.49 16 7 H 0.08 0.87 7.46 -2.39 -0.02 0.86 16 8 N -0.70 -0.17 5.30 -443.04 -2.35 -2.52 16 9 C 0.55 4.34 7.77 86.75 0.67 5.02 16 10 O -0.59 -10.37 15.93 -3.95 -0.06 -10.43 16 11 C -0.15 -0.58 5.88 -20.06 -0.12 -0.70 16 12 C -0.07 -0.40 9.58 22.49 0.22 -0.18 16 13 C -0.12 -0.29 9.41 22.44 0.21 -0.08 16 14 C -0.02 -0.01 5.88 -20.00 -0.12 -0.13 16 15 C -0.06 -0.05 5.88 -20.04 -0.12 -0.17 16 16 C -0.10 0.18 9.43 22.49 0.21 0.39 16 17 C -0.12 0.09 8.65 22.24 0.19 0.28 16 18 C -0.08 -0.13 5.39 -19.82 -0.11 -0.23 16 19 C -0.09 0.10 2.79 71.24 0.20 0.29 16 20 O -0.56 -1.18 12.81 -148.98 -1.91 -3.09 16 21 Si 0.77 -2.29 29.85 68.60 2.05 -0.24 16 22 C -0.10 -0.23 9.67 22.23 0.21 -0.02 16 23 C -0.11 -0.17 9.43 22.49 0.21 0.05 16 24 C -0.12 0.40 9.41 22.44 0.21 0.61 16 25 C -0.07 0.24 9.52 22.49 0.21 0.45 16 26 C -0.17 -0.02 7.71 31.12 0.24 0.22 16 27 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.13 -1.33 8.12 -2.39 -0.02 -1.35 16 32 H 0.42 -3.24 6.74 -92.71 -0.63 -3.87 16 33 H 0.12 0.95 7.64 -2.91 -0.02 0.93 16 34 H 0.14 -0.10 6.19 -2.91 -0.02 -0.12 16 35 H 0.16 -1.24 6.19 -2.91 -0.02 -1.26 16 36 H 0.14 -0.63 4.85 -2.91 -0.01 -0.64 16 37 H 0.09 -0.44 7.96 -2.39 -0.02 -0.46 16 38 H 0.39 -2.31 8.74 -74.06 -0.65 -2.96 16 39 H -0.29 -0.43 7.11 99.48 0.71 0.28 16 40 H -0.30 -1.10 7.04 99.48 0.70 -0.40 16 41 H 0.13 0.11 8.06 -2.91 -0.02 0.08 16 42 H 0.14 -0.19 6.19 -2.91 -0.02 -0.21 16 43 H 0.16 -1.55 6.19 -2.91 -0.02 -1.57 16 44 H 0.16 -1.79 6.39 -2.91 -0.02 -1.81 16 45 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 Total: 0.00 -25.61 379.54 0.07 -25.55 By element: Atomic # 1 Polarization: -13.97 SS G_CDS: -0.21 Total: -14.17 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.13 Total: 8.24 kcal Atomic # 7 Polarization: -0.17 SS G_CDS: -2.35 Total: -2.52 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -3.55 Total: -16.86 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: 2.05 Total: -0.24 kcal Total: -25.61 0.07 -25.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_13158362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.264 kcal (2) G-P(sol) polarization free energy of solvation -25.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds