Wall clock time and date at job start Sat Mar 6 2021 21:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00475 * 2 1 4 4 H 1.09006 * 112.84843 * 341.19680 * 3 2 1 5 5 C 1.53776 * 113.69479 * 112.46661 * 3 2 1 6 6 C 1.53776 * 87.08553 * 139.99734 * 5 3 2 7 7 H 1.08999 * 113.69031 * 220.01103 * 6 5 3 8 8 N 1.46494 * 113.61937 * 89.11629 * 6 5 3 9 9 C 1.34779 * 119.99973 * 107.50131 * 8 6 5 10 10 O 1.21507 * 119.99808 * 0.02562 * 9 8 6 11 11 C 1.48171 * 119.99625 * 180.02562 * 9 8 6 12 12 N 1.32714 * 119.72755 * 0.02562 * 11 9 8 13 13 C 1.31517 * 121.64457 * 179.74934 * 12 11 9 14 14 C 1.38561 * 120.90317 * 0.49570 * 13 12 11 15 15 C 1.50696 * 120.32661 * 179.76778 * 14 13 12 16 16 O 1.42903 * 109.47131 * 119.71758 * 15 14 13 17 17 Si 1.86305 * 109.47185 * 359.72299 * 15 14 13 18 18 C 1.38624 * 119.35060 * 359.49386 * 14 13 12 19 19 C 1.38591 * 118.49074 * 0.25131 * 18 14 13 20 20 C 1.53785 * 113.61915 * 210.00577 * 3 2 1 21 21 H 1.08996 * 109.47186 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46707 * 299.99958 * 1 2 3 23 23 H 1.08995 * 109.47414 * 59.99641 * 1 2 3 24 24 H 1.09004 * 113.61584 * 25.44314 * 5 3 2 25 25 H 1.08998 * 113.61763 * 254.54612 * 5 3 2 26 26 H 0.96997 * 120.00014 * 287.51084 * 8 6 5 27 27 H 1.07999 * 119.55420 * 180.23927 * 13 12 11 28 28 H 1.08999 * 109.47358 * 239.72118 * 15 14 13 29 29 H 0.96700 * 114.00311 * 300.00591 * 16 15 14 30 30 H 1.48499 * 109.99670 * 58.67633 * 17 15 14 31 31 H 1.48497 * 110.00233 * 179.97438 * 17 15 14 32 32 H 1.08001 * 120.75677 * 180.22855 * 18 14 13 33 33 H 1.07994 * 120.47383 * 180.02562 * 19 18 14 34 34 H 1.08998 * 113.61307 * 105.38058 * 20 3 2 35 35 H 1.09000 * 113.68895 * 334.49193 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 -0.3238 5 6 2.7532 1.6510 1.3013 6 6 3.8221 2.3198 0.4209 7 1 4.8425 2.1437 0.7611 8 7 3.5518 3.7321 0.1405 9 6 4.2914 4.6904 0.7331 10 8 5.1826 4.3829 1.4997 11 6 4.0175 6.1187 0.4498 12 7 3.0424 6.4483 -0.3879 13 6 2.7638 7.7039 -0.6627 14 6 3.4905 8.7357 -0.0907 15 6 3.1634 10.1697 -0.4187 16 8 2.7984 10.8607 0.7777 17 14 1.7438 10.2228 -1.6241 18 6 4.5176 8.4362 0.7907 19 6 4.7856 7.1045 1.0656 20 6 3.3756 1.3718 -0.7046 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 3.1170 0.7770 1.8417 25 1 2.2134 2.3502 1.9398 26 1 2.8405 3.9774 -0.4716 27 1 1.9602 7.9339 -1.3466 28 1 4.0356 10.6489 -0.8633 29 1 2.0279 10.4880 1.2277 30 1 0.5578 9.5446 -1.0421 31 1 1.4110 11.6317 -1.9552 32 1 5.0962 9.2226 1.2524 33 1 5.5783 6.8348 1.7477 34 1 3.3381 1.8457 -1.6855 35 1 3.9105 0.4222 -0.7136 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_13287726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:11:33 Heat of formation + Delta-G solvation = -39.519715 kcal Electronic energy + Delta-G solvation = -19553.416180 eV Core-core repulsion = 16326.477181 eV Total energy + Delta-G solvation = -3226.938999 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.00244 -41.01251 -39.68152 -38.02743 -37.34584 -34.49074 -33.41896 -32.93628 -28.24031 -27.57259 -26.78746 -25.30655 -24.98358 -23.78892 -22.14408 -20.66847 -19.41037 -18.71902 -17.95006 -17.68350 -16.79344 -16.72086 -16.63987 -16.36163 -16.23754 -16.05370 -15.93119 -15.24765 -14.57487 -14.42739 -14.34623 -14.10747 -13.67180 -13.52013 -13.47185 -13.35534 -12.64607 -12.19967 -12.15007 -11.99008 -11.62009 -11.46109 -11.11118 -10.71145 -10.69797 -10.49041 -10.40687 -10.13683 -4.92769 -0.62918 0.06424 1.23769 1.48759 1.59547 1.84045 1.97274 2.62702 2.85480 2.89888 3.31955 3.40812 3.48421 3.50604 3.63267 3.76366 3.79862 3.91358 3.93340 4.10597 4.36806 4.47417 4.48171 4.53883 4.59357 4.70151 4.73084 4.83460 4.86654 4.90186 4.92334 4.97717 4.98476 5.35411 5.40573 6.21278 6.25779 6.41692 6.57795 6.98011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.061 3.939 4 H 0.102 0.898 5 C -0.166 4.166 6 C 0.116 3.884 7 H 0.099 0.901 8 N -0.683 5.683 9 C 0.572 3.428 10 O -0.564 6.564 11 C 0.063 3.937 12 N -0.459 5.459 13 C 0.102 3.898 14 C -0.139 4.139 15 C -0.079 4.079 16 O -0.544 6.544 17 Si 0.767 3.233 18 C -0.053 4.053 19 C -0.115 4.115 20 C -0.132 4.132 21 H 0.092 0.908 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.420 0.580 27 H 0.188 0.812 28 H 0.138 0.862 29 H 0.388 0.612 30 H -0.275 1.275 31 H -0.300 1.300 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 1.669 -4.272 5.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.003 3.997 4 H 0.120 0.880 5 C -0.205 4.205 6 C 0.010 3.990 7 H 0.117 0.883 8 N -0.334 5.334 9 C 0.358 3.642 10 O -0.442 6.442 11 C -0.074 4.074 12 N -0.170 5.170 13 C -0.058 4.058 14 C -0.141 4.141 15 C -0.188 4.188 16 O -0.352 6.352 17 Si 0.671 3.329 18 C -0.078 4.078 19 C -0.136 4.136 20 C -0.170 4.170 21 H 0.110 0.890 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.087 0.913 26 H 0.258 0.742 27 H 0.204 0.796 28 H 0.155 0.845 29 H 0.238 0.762 30 H -0.202 1.202 31 H -0.228 1.228 32 H 0.179 0.821 33 H 0.166 0.834 34 H 0.112 0.888 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.195 1.165 -4.416 5.574 hybrid contribution -0.280 1.004 1.566 1.881 sum -3.475 2.168 -2.850 4.990 Atomic orbital electron populations 1.22954 0.79890 1.03695 1.00760 1.87918 1.21151 1.27992 1.94630 1.23907 0.94293 0.85439 0.96040 0.88005 1.23957 0.97743 1.00958 0.97804 1.21683 0.99939 0.79518 0.97846 0.88294 1.45455 1.36434 1.04858 1.46645 1.18108 0.81156 0.85080 0.79830 1.90794 1.33131 1.82998 1.37304 1.21016 0.95324 0.93754 0.97288 1.67498 1.14756 1.22144 1.12609 1.23025 0.98503 0.86623 0.97658 1.21698 0.96581 0.97990 0.97839 1.25224 1.11178 0.88558 0.93817 1.86616 1.52494 1.57485 1.38610 0.94118 0.75188 0.79821 0.83784 1.21732 0.95395 0.96036 0.94669 1.22281 0.99494 0.92931 0.98852 1.23556 0.95205 0.99966 0.98278 0.88981 0.93603 0.92742 0.88433 0.91296 0.74155 0.79587 0.84480 0.76221 1.20160 1.22778 0.82132 0.83364 0.88785 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.28 10.72 -148.98 -1.60 -2.87 16 3 C 0.06 -0.04 4.18 31.12 0.13 0.09 16 4 H 0.10 -0.39 7.87 -2.38 -0.02 -0.41 16 5 C -0.17 -0.20 7.71 31.12 0.24 0.04 16 6 C 0.12 0.16 4.32 45.52 0.20 0.35 16 7 H 0.10 0.46 7.46 -2.39 -0.02 0.44 16 8 N -0.68 -1.01 5.25 -442.61 -2.32 -3.34 16 9 C 0.57 3.78 7.81 86.88 0.68 4.46 16 10 O -0.56 -7.53 15.92 -3.74 -0.06 -7.59 16 11 C 0.06 0.22 6.75 41.91 0.28 0.51 16 12 N -0.46 -0.22 9.54 -184.91 -1.76 -1.98 16 13 C 0.10 -0.37 9.84 84.82 0.83 0.47 16 14 C -0.14 0.57 5.40 -19.70 -0.11 0.46 16 15 C -0.08 0.46 2.83 71.23 0.20 0.66 16 16 O -0.54 1.26 12.78 -148.98 -1.90 -0.64 16 17 Si 0.77 -5.22 29.82 68.60 2.05 -3.17 16 18 C -0.05 0.12 9.76 22.45 0.22 0.34 16 19 C -0.11 -0.20 9.63 22.61 0.22 0.02 16 20 C -0.13 0.24 7.66 31.12 0.24 0.47 16 21 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 22 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 23 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 24 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 25 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.42 -0.94 8.03 -92.71 -0.74 -1.69 16 27 H 0.19 -1.68 4.89 -2.91 -0.01 -1.70 16 28 H 0.14 -1.09 7.96 -2.39 -0.02 -1.11 16 29 H 0.39 -2.97 8.70 -74.06 -0.64 -3.61 16 30 H -0.28 0.92 7.11 99.48 0.71 1.63 16 31 H -0.30 -0.49 7.11 99.48 0.71 0.22 16 32 H 0.16 -0.82 8.06 -2.91 -0.02 -0.84 16 33 H 0.15 0.31 7.64 -2.91 -0.02 0.28 16 34 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -16.82 302.61 -1.47 -18.28 By element: Atomic # 1 Polarization: -7.52 SS G_CDS: -0.23 Total: -7.75 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 4.36 Total: 9.06 kcal Atomic # 7 Polarization: -1.23 SS G_CDS: -4.09 Total: -5.32 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -3.56 Total: -11.10 kcal Atomic # 14 Polarization: -5.22 SS G_CDS: 2.05 Total: -3.17 kcal Total: -16.82 -1.47 -18.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_13287726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.236 kcal (2) G-P(sol) polarization free energy of solvation -16.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds