Wall clock time and date at job start Sat Mar 6 2021 21:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99972 * 2 1 4 4 H 1.09001 * 112.84827 * 18.80586 * 3 2 1 5 5 C 1.53780 * 113.61258 * 150.00041 * 3 2 1 6 6 C 1.53785 * 87.08051 * 89.20499 * 5 3 2 7 7 H 1.08998 * 113.61132 * 270.79787 * 6 5 3 8 8 N 1.46498 * 113.61350 * 139.98308 * 6 5 3 9 9 C 1.34773 * 119.99904 * 156.52802 * 8 6 5 10 10 O 1.21285 * 120.00233 * 359.97438 * 9 8 6 11 11 C 1.50705 * 119.99953 * 179.97438 * 9 8 6 12 12 C 1.50703 * 109.47057 * 180.02562 * 11 9 8 13 13 C 1.38276 * 119.93438 * 90.00170 * 12 11 9 14 14 C 1.38122 * 120.06549 * 180.02562 * 13 12 11 15 15 C 1.38829 * 119.93490 * 359.97438 * 14 13 12 16 16 N 1.40190 * 120.06598 * 179.97438 * 15 14 13 17 17 C 1.36574 * 125.67024 * 310.15227 * 16 15 14 18 18 C 1.34846 * 108.20688 * 180.29954 * 17 16 15 19 19 C 1.40946 * 107.46309 * 359.73587 * 18 17 16 20 20 C 1.34845 * 107.46984 * 359.97438 * 19 18 17 21 21 C 1.50699 * 125.89837 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47152 * 150.02915 * 21 20 19 23 23 Si 1.86293 * 109.47431 * 30.02806 * 21 20 19 24 24 C 1.38823 * 119.86808 * 0.25328 * 15 14 13 25 25 C 1.38126 * 119.93333 * 359.49646 * 24 15 14 26 26 C 1.53785 * 87.17254 * 25.39003 * 6 5 3 27 27 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47402 * 299.99503 * 1 2 3 29 29 H 1.09003 * 109.47380 * 59.99509 * 1 2 3 30 30 H 1.08998 * 113.61546 * 334.65180 * 5 3 2 31 31 H 1.09001 * 113.69154 * 203.76075 * 5 3 2 32 32 H 0.97000 * 119.99891 * 336.52330 * 8 6 5 33 33 H 1.08997 * 109.46984 * 60.00450 * 11 9 8 34 34 H 1.09000 * 109.47142 * 299.99793 * 11 9 8 35 35 H 1.08000 * 119.97026 * 359.97438 * 13 12 11 36 36 H 1.08004 * 120.03076 * 180.02562 * 14 13 12 37 37 H 1.08004 * 125.89616 * 0.03179 * 17 16 15 38 38 H 1.07995 * 126.27121 * 179.73352 * 18 17 16 39 39 H 1.08002 * 126.26251 * 180.02562 * 19 18 17 40 40 H 1.09008 * 109.47393 * 270.02310 * 21 20 19 41 41 H 0.96700 * 114.00311 * 180.02562 * 22 21 20 42 42 H 1.48506 * 109.99973 * 59.99460 * 23 21 20 43 43 H 1.48493 * 110.00375 * 181.31561 * 23 21 20 44 44 H 1.08000 * 120.03550 * 179.72481 * 24 15 14 45 45 H 1.07995 * 119.97072 * 180.24573 * 25 24 15 46 46 H 1.08996 * 113.61108 * 89.16144 * 26 6 5 47 47 H 1.08996 * 113.61056 * 220.06344 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3755 1.3719 0.7045 6 6 4.0062 1.0353 -0.6571 7 1 4.1106 -0.0346 -0.8374 8 7 5.2359 1.7816 -0.9347 9 6 6.1378 1.2931 -1.8090 10 8 5.9316 0.2355 -2.3656 11 6 7.4025 2.0611 -2.0950 12 6 8.2332 1.3048 -3.0995 13 6 8.0609 1.5364 -4.4517 14 6 8.8204 0.8443 -5.3747 15 6 9.7580 -0.0843 -4.9435 16 7 10.5300 -0.7887 -5.8779 17 6 10.0486 -1.4527 -6.9700 18 6 11.0918 -2.0084 -7.6190 19 6 12.2608 -1.6716 -6.9071 20 6 11.8889 -0.9221 -5.8496 21 6 12.8125 -0.3392 -4.8113 22 8 12.2556 0.8764 -4.3069 23 14 14.4718 0.0111 -5.5824 24 6 9.9255 -0.3181 -3.5854 25 6 9.1667 0.3808 -2.6670 26 6 2.7534 1.6497 -1.3036 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.5175 0.5948 1.4556 31 1 3.6316 2.3661 1.0705 32 1 5.4010 2.6274 -0.4893 33 1 7.9698 2.1835 -1.1724 34 1 7.1489 3.0415 -2.4984 35 1 7.3310 2.2586 -4.7867 36 1 8.6856 1.0260 -6.4308 37 1 9.0109 -1.5244 -7.2609 38 1 11.0411 -2.6026 -8.5193 39 1 13.2697 -1.9603 -7.1624 40 1 12.9346 -1.0496 -3.9935 41 1 12.7984 1.3079 -3.6330 42 1 14.3190 0.9785 -6.6987 43 1 15.4016 0.5567 -4.5612 44 1 10.6510 -1.0432 -3.2472 45 1 9.2993 0.2022 -1.6102 46 1 2.8380 2.7206 -1.4883 47 1 2.3941 1.0965 -2.1713 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_13287746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:11:40 Heat of formation + Delta-G solvation = 7.526282 kcal Electronic energy + Delta-G solvation = -29121.410940 eV Core-core repulsion = 25045.220730 eV Total energy + Delta-G solvation = -4076.190210 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.66967 -41.36574 -40.32941 -39.40023 -37.84199 -37.16473 -34.86508 -34.12945 -32.18697 -31.73760 -31.17092 -28.17686 -27.52629 -26.75618 -26.00512 -25.22992 -24.00118 -23.25202 -21.57449 -21.40491 -20.85799 -20.49711 -18.80524 -18.44764 -18.17386 -18.08215 -17.09497 -17.02787 -16.65332 -16.29367 -16.14633 -15.93927 -15.74586 -15.67960 -15.38766 -14.91594 -14.80043 -14.66078 -14.51456 -14.26864 -14.17271 -13.60860 -13.51946 -13.38514 -13.22604 -13.17289 -13.14205 -12.92912 -12.81157 -12.63039 -12.39971 -12.12689 -12.07113 -12.01318 -11.45158 -11.00262 -10.76933 -10.55752 -10.30848 -10.05554 -9.99337 -9.15948 -9.01306 -4.90418 0.00180 0.33520 1.03699 1.43039 1.60551 1.60915 1.89927 1.97855 2.10585 2.17946 2.67316 2.73551 3.20788 3.45905 3.57656 3.60452 3.72286 3.73202 3.80219 3.86520 3.98818 4.07010 4.15552 4.21638 4.29912 4.31469 4.38267 4.48470 4.50817 4.51323 4.52186 4.62554 4.63952 4.66854 4.78374 4.80940 4.83199 4.94351 4.95405 4.99978 5.04285 5.17247 5.19275 5.27879 5.35803 5.47964 5.51666 5.78610 5.96482 6.21306 6.23568 6.47796 6.54680 6.56497 7.27556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.059 3.941 4 H 0.103 0.897 5 C -0.133 4.133 6 C 0.123 3.877 7 H 0.079 0.921 8 N -0.707 5.707 9 C 0.511 3.489 10 O -0.584 6.584 11 C -0.095 4.095 12 C -0.071 4.071 13 C -0.098 4.098 14 C -0.135 4.135 15 C 0.122 3.878 16 N -0.400 5.400 17 C -0.032 4.032 18 C -0.195 4.195 19 C -0.198 4.198 20 C 0.011 3.989 21 C -0.061 4.061 22 O -0.550 6.550 23 Si 0.796 3.204 24 C -0.100 4.100 25 C -0.096 4.096 26 C -0.168 4.168 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.420 0.580 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.170 0.830 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.093 0.907 41 H 0.393 0.607 42 H -0.311 1.311 43 H -0.275 1.275 44 H 0.123 0.877 45 H 0.144 0.856 46 H 0.115 0.885 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 5.047 5.611 7.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C 0.000 4.000 4 H 0.121 0.879 5 C -0.171 4.171 6 C 0.017 3.983 7 H 0.097 0.903 8 N -0.360 5.360 9 C 0.299 3.701 10 O -0.463 6.463 11 C -0.134 4.134 12 C -0.072 4.072 13 C -0.117 4.117 14 C -0.154 4.154 15 C 0.032 3.968 16 N -0.073 5.073 17 C -0.159 4.159 18 C -0.219 4.219 19 C -0.222 4.222 20 C -0.098 4.098 21 C -0.169 4.169 22 O -0.359 6.359 23 Si 0.700 3.300 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.207 4.207 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.148 0.852 32 H 0.258 0.742 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.187 0.813 38 H 0.177 0.823 39 H 0.192 0.808 40 H 0.111 0.889 41 H 0.244 0.756 42 H -0.239 1.239 43 H -0.202 1.202 44 H 0.141 0.859 45 H 0.162 0.838 46 H 0.133 0.867 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.360 4.732 4.857 6.791 hybrid contribution -0.771 0.955 0.549 1.344 sum -1.131 5.687 5.405 7.927 Atomic orbital electron populations 1.22974 0.79357 1.03672 1.01033 1.87868 1.21537 1.27812 1.94683 1.23075 0.95061 0.85438 0.96385 0.87942 1.23610 0.93194 1.04596 0.95705 1.22337 0.82744 0.96347 0.96861 0.90322 1.45893 1.19793 1.25741 1.44552 1.21116 0.85327 0.85413 0.78255 1.90753 1.78747 1.25199 1.51622 1.20753 0.92161 0.99541 1.00947 1.19572 0.96301 0.97368 0.93921 1.21044 0.98584 0.99643 0.92404 1.21096 0.97584 0.96206 1.00557 1.17812 0.94900 0.95114 0.88980 1.41614 1.05723 1.39659 1.20325 1.22318 1.00648 1.02389 0.90589 1.21226 0.91710 1.06148 1.02835 1.21022 1.00532 1.04659 0.96018 1.20415 0.82308 1.05997 1.01077 1.24734 1.05367 0.88148 0.98665 1.86635 1.50098 1.38073 1.61143 0.93586 0.72403 0.86947 0.77097 1.20889 1.00031 1.00061 0.90933 1.21064 0.95223 0.95066 1.00108 1.24019 0.96129 1.02589 0.97914 0.89174 0.92380 0.93336 0.90588 0.85171 0.74166 0.84702 0.84909 0.84071 0.85830 0.81287 0.82255 0.80785 0.88921 0.75625 1.23937 1.20155 0.85866 0.83830 0.86719 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.40 -1.79 10.63 -148.98 -1.58 -3.37 16 3 C 0.06 -0.09 4.38 31.18 0.14 0.05 16 4 H 0.10 -0.60 7.87 -2.39 -0.02 -0.62 16 5 C -0.13 0.53 7.66 31.12 0.24 0.77 16 6 C 0.12 0.14 4.15 45.52 0.19 0.33 16 7 H 0.08 0.76 7.50 -2.39 -0.02 0.74 16 8 N -0.71 2.15 5.36 -440.03 -2.36 -0.21 16 9 C 0.51 1.40 7.82 87.66 0.69 2.08 16 10 O -0.58 -8.39 15.65 -3.04 -0.05 -8.44 16 11 C -0.09 0.40 5.83 29.10 0.17 0.57 16 12 C -0.07 -0.22 4.38 -19.84 -0.09 -0.31 16 13 C -0.10 -0.52 9.69 22.25 0.22 -0.30 16 14 C -0.14 -1.18 9.66 22.38 0.22 -0.96 16 15 C 0.12 1.22 4.89 38.09 0.19 1.41 16 16 N -0.40 -4.18 2.87 -333.42 -0.96 -5.14 16 17 C -0.03 -0.29 11.12 83.18 0.92 0.64 16 18 C -0.20 -1.30 10.86 22.15 0.24 -1.06 16 19 C -0.20 -1.08 9.43 22.15 0.21 -0.88 16 20 C 0.01 0.09 6.05 41.04 0.25 0.34 16 21 C -0.06 -0.13 2.27 71.24 0.16 0.03 16 22 O -0.55 -2.03 9.87 -148.98 -1.47 -3.50 16 23 Si 0.80 -0.19 31.14 68.60 2.14 1.95 16 24 C -0.10 -0.74 7.68 22.38 0.17 -0.56 16 25 C -0.10 -0.40 9.69 22.25 0.22 -0.19 16 26 C -0.17 0.08 7.72 31.18 0.24 0.32 16 27 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.13 -1.37 8.11 -2.39 -0.02 -1.39 16 32 H 0.42 -4.66 8.71 -92.71 -0.81 -5.47 16 33 H 0.14 -1.34 8.08 -2.39 -0.02 -1.36 16 34 H 0.13 -1.27 8.08 -2.39 -0.02 -1.29 16 35 H 0.14 0.15 8.06 -2.91 -0.02 0.12 16 36 H 0.12 0.95 8.06 -2.91 -0.02 0.93 16 37 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 39 H 0.17 -0.23 6.89 -2.91 -0.02 -0.25 16 40 H 0.09 -0.16 7.96 -2.38 -0.02 -0.18 16 41 H 0.39 -1.83 8.74 -74.06 -0.65 -2.48 16 42 H -0.31 -2.92 7.11 99.48 0.71 -2.22 16 43 H -0.28 -0.55 7.11 99.48 0.71 0.16 16 44 H 0.12 0.75 7.68 -2.91 -0.02 0.73 16 45 H 0.14 -0.06 8.06 -2.91 -0.02 -0.08 16 46 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 47 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 Total: 0.00 -28.58 392.64 0.88 -27.70 By element: Atomic # 1 Polarization: -12.04 SS G_CDS: -0.43 Total: -12.47 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.59 Total: 3.48 kcal Atomic # 7 Polarization: -2.03 SS G_CDS: -3.32 Total: -5.35 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -3.10 Total: -15.31 kcal Atomic # 14 Polarization: -0.19 SS G_CDS: 2.14 Total: 1.95 kcal Total: -28.58 0.88 -27.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_13287746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.229 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds