Wall clock time and date at job start Sat Mar 6 2021 21:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99885 * 2 1 4 4 H 1.09001 * 112.84895 * 18.80302 * 3 2 1 5 5 C 1.53777 * 113.61415 * 150.00116 * 3 2 1 6 6 C 1.53779 * 87.08427 * 89.11497 * 5 3 2 7 7 H 1.09003 * 113.61495 * 270.80150 * 6 5 3 8 8 N 1.46496 * 113.61783 * 139.98003 * 6 5 3 9 9 C 1.34777 * 120.00063 * 154.99720 * 8 6 5 10 10 O 1.21605 * 119.99902 * 0.02562 * 9 8 6 11 11 C 1.47382 * 120.00000 * 179.97438 * 9 8 6 12 12 C 1.36411 * 127.19333 * 180.02562 * 11 9 8 13 13 C 1.50703 * 125.80010 * 0.04052 * 12 11 9 14 14 O 1.33646 * 108.39825 * 180.30522 * 12 11 9 15 15 C 1.34221 * 110.90793 * 359.55277 * 14 12 11 16 16 C 1.50701 * 125.43875 * 180.16847 * 15 14 12 17 17 O 1.42905 * 109.46798 * 245.33150 * 16 15 14 18 18 Si 1.86299 * 109.46936 * 5.32872 * 16 15 14 19 19 C 1.34175 * 109.12345 * 0.45078 * 15 14 12 20 20 C 1.53784 * 113.61311 * 247.49767 * 3 2 1 21 21 H 1.08999 * 109.47243 * 299.99886 * 1 2 3 22 22 H 1.08996 * 109.47480 * 59.99987 * 1 2 3 23 23 H 1.08999 * 109.47150 * 180.02562 * 1 2 3 24 24 H 1.09002 * 113.61723 * 334.56634 * 5 3 2 25 25 H 1.08999 * 113.61289 * 203.66492 * 5 3 2 26 26 H 0.96999 * 120.00159 * 335.00299 * 8 6 5 27 27 H 1.09002 * 109.47152 * 89.99913 * 13 12 11 28 28 H 1.09001 * 109.46980 * 330.00014 * 13 12 11 29 29 H 1.09004 * 109.47113 * 209.99994 * 13 12 11 30 30 H 1.08991 * 109.47112 * 125.32992 * 16 15 14 31 31 H 0.96699 * 113.99708 * 179.97438 * 17 16 15 32 32 H 1.48496 * 110.00327 * 299.99843 * 18 16 15 33 33 H 1.48494 * 110.00259 * 61.31968 * 18 16 15 34 34 H 1.08000 * 127.02561 * 179.75639 * 19 15 14 35 35 H 1.08997 * 113.61060 * 156.33857 * 20 3 2 36 36 H 1.08995 * 113.61350 * 25.42829 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3755 1.3719 0.7045 6 6 4.0061 1.0331 -0.6565 7 1 4.1098 -0.0372 -0.8354 8 7 5.2363 1.7781 -0.9352 9 6 6.1522 1.2731 -1.7852 10 8 5.9572 0.1991 -2.3212 11 6 7.3895 2.0229 -2.0660 12 6 8.4076 1.6533 -2.8953 13 6 8.4691 0.3828 -3.7035 14 8 9.3438 2.6066 -2.8648 15 6 8.9809 3.6084 -2.0485 16 6 9.7906 4.8496 -1.7750 17 8 10.1942 4.8626 -0.4042 18 14 11.3000 4.8595 -2.8670 19 6 7.7850 3.3253 -1.5099 20 6 2.7534 1.6489 -1.3018 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.5170 0.5958 1.4566 25 1 3.6310 2.3671 1.0685 26 1 5.3918 2.6349 -0.5078 27 1 8.0187 0.5522 -4.6815 28 1 7.9239 -0.4051 -3.1839 29 1 9.5093 0.0825 -3.8297 30 1 9.1852 5.7316 -1.9840 31 1 10.7208 5.6350 -0.1566 32 1 12.1338 3.6619 -2.5918 33 1 10.8937 4.8781 -4.2951 34 1 7.2268 3.9306 -0.8110 35 1 2.8389 2.7197 -1.4862 36 1 2.3927 1.0963 -2.1693 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_13308374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:11:45 Heat of formation + Delta-G solvation = -65.539423 kcal Electronic energy + Delta-G solvation = -20368.391383 eV Core-core repulsion = 17015.293944 eV Total energy + Delta-G solvation = -3353.097439 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.92511 -41.23930 -39.82620 -37.89662 -37.19950 -34.68868 -33.87438 -33.21465 -29.59359 -27.72646 -26.80588 -26.40556 -25.20599 -23.90582 -22.22134 -21.36259 -20.36799 -18.75418 -18.48420 -18.08549 -17.42602 -17.15324 -16.95948 -16.36746 -16.18013 -15.87561 -15.72225 -15.62702 -14.84533 -14.71525 -14.35136 -14.24690 -14.18232 -14.01131 -13.54963 -13.37941 -13.20270 -13.13018 -12.63110 -12.43225 -12.22008 -12.04369 -11.47612 -11.19195 -11.06306 -10.55784 -10.46984 -10.16204 -9.69722 -5.09394 0.06833 0.70563 1.16052 1.39585 1.63205 2.01210 2.07566 2.12741 2.67032 3.13083 3.42640 3.55551 3.59355 3.63691 3.66471 3.79097 4.01806 4.05236 4.23115 4.27594 4.37129 4.42112 4.48317 4.53032 4.53347 4.64525 4.65582 4.77390 4.82368 4.89965 4.96470 4.98872 5.02816 5.10454 5.42639 5.76007 6.23748 6.41544 6.84685 7.07576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.063 3.937 4 H 0.105 0.895 5 C -0.135 4.135 6 C 0.121 3.879 7 H 0.088 0.912 8 N -0.698 5.698 9 C 0.589 3.411 10 O -0.576 6.576 11 C -0.265 4.265 12 C 0.074 3.926 13 C -0.084 4.084 14 O -0.193 6.193 15 C -0.038 4.038 16 C -0.034 4.034 17 O -0.559 6.559 18 Si 0.804 3.196 19 C -0.137 4.137 20 C -0.166 4.166 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.416 0.584 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.414 0.586 32 H -0.310 1.310 33 H -0.296 1.296 34 H 0.190 0.810 35 H 0.113 0.887 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.713 9.143 2.891 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.005 3.995 4 H 0.123 0.877 5 C -0.173 4.173 6 C 0.016 3.984 7 H 0.106 0.894 8 N -0.348 5.348 9 C 0.378 3.622 10 O -0.458 6.458 11 C -0.269 4.269 12 C 0.021 3.979 13 C -0.140 4.140 14 O -0.091 6.091 15 C -0.085 4.085 16 C -0.143 4.143 17 O -0.371 6.371 18 Si 0.711 3.289 19 C -0.156 4.156 20 C -0.205 4.205 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.146 0.854 26 H 0.253 0.747 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.149 0.851 31 H 0.268 0.732 32 H -0.239 1.239 33 H -0.223 1.223 34 H 0.207 0.793 35 H 0.131 0.869 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.368 7.286 1.785 7.511 hybrid contribution -0.667 -0.133 0.107 0.689 sum -1.036 7.153 1.892 7.471 Atomic orbital electron populations 1.22981 0.79300 1.03708 1.01069 1.87872 1.21575 1.27625 1.94657 1.22985 0.94852 0.85598 0.96072 0.87679 1.23635 0.93413 1.04565 0.95672 1.22512 0.81956 0.96643 0.97299 0.89433 1.45661 1.19199 1.24352 1.45624 1.17368 0.82238 0.84002 0.78608 1.90752 1.78892 1.23367 1.52785 1.21288 0.98525 0.99595 1.07485 1.23302 0.86553 0.90819 0.97207 1.20710 1.04997 0.88945 0.99373 1.83701 1.43491 1.26535 1.55410 1.21894 0.97200 0.91900 0.97489 1.23933 1.06600 0.92126 0.91664 1.86415 1.75758 1.51656 1.23311 0.94402 0.76167 0.83774 0.74547 1.22867 0.96066 0.94953 1.01726 1.23991 0.95670 1.02583 0.98252 0.92416 0.93237 0.89120 0.90375 0.85444 0.74666 0.88122 0.88148 0.88878 0.85056 0.73214 1.23880 1.22325 0.79278 0.86900 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.40 -1.86 10.63 -148.98 -1.58 -3.44 16 3 C 0.06 -0.04 4.38 31.12 0.14 0.09 16 4 H 0.11 -0.57 7.87 -2.39 -0.02 -0.59 16 5 C -0.13 0.28 7.66 31.12 0.24 0.52 16 6 C 0.12 0.43 4.17 45.52 0.19 0.62 16 7 H 0.09 0.94 7.46 -2.39 -0.02 0.92 16 8 N -0.70 -1.88 5.35 -443.35 -2.37 -4.25 16 9 C 0.59 5.85 7.81 86.65 0.68 6.52 16 10 O -0.58 -9.76 14.44 -4.05 -0.06 -9.82 16 11 C -0.26 -2.22 6.31 -18.99 -0.12 -2.34 16 12 C 0.07 0.71 7.37 25.26 0.19 0.89 16 13 C -0.08 -0.49 9.89 71.24 0.70 0.21 16 14 O -0.19 -1.90 8.90 4.46 0.04 -1.86 16 15 C -0.04 -0.20 6.22 24.76 0.15 -0.04 16 16 C -0.03 0.10 2.96 71.24 0.21 0.31 16 17 O -0.56 2.09 12.86 -148.98 -1.92 0.18 16 18 Si 0.80 -1.74 32.09 68.60 2.20 0.47 16 19 C -0.14 -0.46 10.48 23.65 0.25 -0.21 16 20 C -0.17 -0.13 7.71 31.12 0.24 0.11 16 21 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 22 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 23 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.13 -1.02 8.12 -2.39 -0.02 -1.04 16 26 H 0.42 -1.62 7.90 -92.71 -0.73 -2.35 16 27 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.10 0.86 6.48 -2.39 -0.02 0.84 16 29 H 0.09 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.13 -1.31 7.96 -2.39 -0.02 -1.33 16 31 H 0.41 -6.32 8.74 -74.06 -0.65 -6.97 16 32 H -0.31 -2.48 7.11 99.48 0.71 -1.77 16 33 H -0.30 -1.42 7.11 99.48 0.71 -0.71 16 34 H 0.19 -0.76 7.74 -2.91 -0.02 -0.78 16 35 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 Total: 0.00 -24.96 311.72 0.17 -24.79 By element: Atomic # 1 Polarization: -13.73 SS G_CDS: -0.23 Total: -13.96 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 4.10 Total: 7.90 kcal Atomic # 7 Polarization: -1.88 SS G_CDS: -2.37 Total: -4.25 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -3.52 Total: -14.94 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.20 Total: 0.47 kcal Total: -24.96 0.17 -24.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_13308374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.747 kcal (2) G-P(sol) polarization free energy of solvation -24.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds