Wall clock time and date at job start Sat Mar 6 2021 21:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99899 * 2 1 4 4 H 1.08998 * 112.84753 * 18.80577 * 3 2 1 5 5 C 1.53777 * 113.61184 * 150.00184 * 3 2 1 6 6 C 1.53784 * 87.08313 * 89.11644 * 5 3 2 7 7 H 1.08999 * 113.61137 * 270.79363 * 6 5 3 8 8 N 1.46503 * 113.61375 * 139.97914 * 6 5 3 9 9 C 1.34772 * 119.99712 * 154.99753 * 8 6 5 10 10 O 1.21592 * 120.00559 * 0.02562 * 9 8 6 11 11 C 1.47525 * 119.99809 * 179.97438 * 9 8 6 12 12 C 1.39773 * 120.06718 * 180.02562 * 11 9 8 13 13 C 1.37633 * 119.93025 * 179.97438 * 12 11 9 14 14 C 1.50697 * 119.96575 * 180.02562 * 13 12 11 15 15 O 1.42905 * 109.46908 * 255.01763 * 14 13 12 16 16 Si 1.86299 * 109.47352 * 15.01688 * 14 13 12 17 17 C 1.39191 * 120.06635 * 0.02562 * 13 12 11 18 18 N 1.39055 * 119.93184 * 179.97438 * 17 13 12 19 19 C 1.46901 * 110.99854 * 240.00353 * 18 17 13 20 20 C 1.46898 * 110.99970 * 116.04517 * 18 17 13 21 21 C 1.39239 * 120.14251 * 0.25580 * 17 13 12 22 22 C 1.37593 * 120.06312 * 359.44832 * 21 17 13 23 23 C 1.53776 * 87.08049 * 25.43110 * 6 5 3 24 24 H 1.09002 * 109.46928 * 60.00077 * 1 2 3 25 25 H 1.09001 * 109.47099 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47230 * 299.99995 * 1 2 3 27 27 H 1.08996 * 113.61856 * 334.56328 * 5 3 2 28 28 H 1.09004 * 113.61406 * 203.66737 * 5 3 2 29 29 H 0.97000 * 119.99611 * 335.00024 * 8 6 5 30 30 H 1.07999 * 120.03740 * 359.95644 * 12 11 9 31 31 H 1.09003 * 109.47243 * 135.01424 * 14 13 12 32 32 H 0.96696 * 113.99921 * 299.99835 * 15 14 13 33 33 H 1.48499 * 110.00070 * 298.68484 * 16 14 13 34 34 H 1.48500 * 109.99905 * 59.99850 * 16 14 13 35 35 H 1.09002 * 109.47401 * 59.99571 * 19 18 17 36 36 H 1.09001 * 109.46874 * 299.99584 * 19 18 17 37 37 H 1.09004 * 109.46970 * 179.97438 * 19 18 17 38 38 H 1.09006 * 109.46770 * 179.97438 * 20 18 17 39 39 H 1.09001 * 109.47456 * 300.00115 * 20 18 17 40 40 H 1.09000 * 109.46814 * 60.00421 * 20 18 17 41 41 H 1.08002 * 119.96976 * 179.72444 * 21 17 13 42 42 H 1.08003 * 120.02921 * 180.27185 * 22 21 17 43 43 H 1.08999 * 113.61723 * 89.11545 * 23 6 5 44 44 H 1.08996 * 113.61716 * 220.01923 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0788 0.3238 5 6 3.3755 1.3719 0.7045 6 6 4.0061 1.0330 -0.6566 7 1 4.1098 -0.0372 -0.8354 8 7 5.2364 1.7782 -0.9352 9 6 6.1522 1.2732 -1.7852 10 8 5.9573 0.1994 -2.3213 11 6 7.3907 2.0238 -2.0662 12 6 8.3413 1.5016 -2.9479 13 6 9.4955 2.2045 -3.2084 14 6 10.5206 1.6426 -4.1594 15 8 11.6354 1.1435 -3.4176 16 14 9.7598 0.2566 -5.1447 17 6 9.7170 3.4339 -2.5944 18 7 10.8844 4.1414 -2.8592 19 6 11.6590 4.3581 -1.6299 20 6 10.5876 5.4162 -3.5260 21 6 8.7747 3.9540 -1.7110 22 6 7.6161 3.2590 -1.4512 23 6 2.7535 1.6489 -1.3018 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.5170 0.5958 1.4566 28 1 3.6311 2.3670 1.0685 29 1 5.3917 2.6350 -0.5077 30 1 8.1703 0.5475 -3.4241 31 1 10.8569 2.4277 -4.8366 32 1 12.0813 1.8123 -2.8800 33 1 9.3259 -0.8343 -4.2354 34 1 8.5992 0.7627 -5.9207 35 1 11.9251 3.3953 -1.1937 36 1 11.0598 4.9262 -0.9183 37 1 12.5670 4.9132 -1.8657 38 1 11.5181 5.9495 -3.7211 39 1 10.0749 5.2227 -4.4682 40 1 9.9496 6.0226 -2.8830 41 1 8.9515 4.9061 -1.2327 42 1 6.8836 3.6650 -0.7692 43 1 2.8389 2.7197 -1.4863 44 1 2.3927 1.0964 -2.1693 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_13422196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:11:55 Heat of formation + Delta-G solvation = -36.558606 kcal Electronic energy + Delta-G solvation = -25538.388674 eV Core-core repulsion = 21844.965221 eV Total energy + Delta-G solvation = -3693.423453 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.94748 -41.07945 -39.94934 -37.75159 -37.43514 -37.21176 -34.54124 -32.79645 -31.38844 -28.57978 -27.78353 -26.98342 -26.87616 -26.63922 -24.96170 -23.34778 -22.98694 -21.42588 -20.94274 -19.19294 -18.43119 -17.94346 -17.83514 -17.28065 -16.84155 -16.57313 -16.32478 -16.21723 -16.03749 -15.92172 -15.67511 -15.12823 -15.09509 -14.84977 -14.61940 -14.13946 -13.90739 -13.73564 -13.52202 -13.42238 -13.25449 -13.15490 -13.05682 -12.75649 -12.66405 -12.48121 -12.38624 -12.10026 -11.54457 -11.45515 -11.30218 -11.01879 -10.59501 -10.34220 -10.24807 -9.90741 -9.64635 -4.95625 -0.55521 -0.00599 1.28703 1.46411 1.55525 1.88912 1.92033 2.46490 2.63896 2.66872 3.34935 3.42639 3.48402 3.50762 3.54455 3.73284 3.83066 3.94641 4.01209 4.03341 4.09796 4.23606 4.36149 4.37585 4.41044 4.44961 4.50150 4.56431 4.59577 4.60312 4.66369 4.73537 4.79105 4.83298 4.88845 4.91493 4.95152 4.97577 4.98798 5.01287 5.09408 5.31885 5.40385 5.75746 6.13531 6.20717 6.30537 6.65239 6.96749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.063 3.937 4 H 0.108 0.892 5 C -0.132 4.132 6 C 0.116 3.884 7 H 0.082 0.918 8 N -0.695 5.695 9 C 0.553 3.447 10 O -0.588 6.588 11 C -0.150 4.150 12 C -0.083 4.083 13 C -0.113 4.113 14 C -0.061 4.061 15 O -0.544 6.544 16 Si 0.794 3.206 17 C 0.134 3.866 18 N -0.524 5.524 19 C 0.022 3.978 20 C 0.025 3.975 21 C -0.147 4.147 22 C -0.056 4.056 23 C -0.167 4.167 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.418 0.582 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.375 0.625 33 H -0.304 1.304 34 H -0.275 1.275 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.117 0.883 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 10.397 3.421 10.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.005 3.995 4 H 0.126 0.874 5 C -0.170 4.170 6 C 0.011 3.989 7 H 0.100 0.900 8 N -0.346 5.346 9 C 0.342 3.658 10 O -0.470 6.470 11 C -0.153 4.153 12 C -0.102 4.102 13 C -0.114 4.114 14 C -0.171 4.171 15 O -0.350 6.350 16 Si 0.700 3.300 17 C 0.039 3.961 18 N -0.245 5.245 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.167 4.167 22 C -0.075 4.075 23 C -0.206 4.206 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.258 0.742 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.224 0.776 33 H -0.233 1.233 34 H -0.202 1.202 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.179 0.821 42 H 0.185 0.815 43 H 0.135 0.865 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.272 8.209 2.306 8.531 hybrid contribution -0.986 1.551 1.551 2.405 sum -1.258 9.759 3.857 10.569 Atomic orbital electron populations 1.22984 0.79253 1.03703 1.01114 1.87878 1.21636 1.27726 1.94651 1.23000 0.94957 0.85632 0.95956 0.87421 1.23638 0.93196 1.04789 0.95366 1.22544 0.82078 0.96541 0.97709 0.89952 1.45747 1.19148 1.24384 1.45351 1.18560 0.83763 0.84667 0.78806 1.90792 1.79330 1.24184 1.52662 1.19892 0.95265 0.97766 1.02392 1.21058 0.93752 0.98721 0.96665 1.20328 0.95800 0.95088 1.00221 1.25007 0.88392 1.07620 0.96112 1.86683 1.44132 1.39978 1.64251 0.92903 0.79392 0.76233 0.81480 1.18936 0.91142 0.92209 0.93836 1.59446 1.16987 1.21435 1.26670 1.22617 0.98241 1.02569 0.88997 1.22550 1.02780 0.88027 0.98716 1.21936 0.93965 1.01714 0.99073 1.21487 0.97745 0.91338 0.96899 1.24010 0.95591 1.02714 0.98284 0.93268 0.89194 0.92257 0.90333 0.84947 0.74204 0.87384 0.88418 0.77575 1.23298 1.20183 0.91166 0.93755 0.88856 0.88960 0.91654 0.93767 0.82145 0.81532 0.86522 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 113.37 1.23 1.21 16 2 O -0.40 -1.96 10.63 -148.98 -1.58 -3.55 16 3 C 0.06 -0.06 4.38 31.12 0.14 0.07 16 4 H 0.11 -0.65 7.87 -2.39 -0.02 -0.67 16 5 C -0.13 0.38 7.66 31.12 0.24 0.62 16 6 C 0.12 0.42 4.17 45.52 0.19 0.61 16 7 H 0.08 0.99 7.46 -2.39 -0.02 0.97 16 8 N -0.69 -1.13 5.30 -443.21 -2.35 -3.48 16 9 C 0.55 5.84 7.76 86.69 0.67 6.51 16 10 O -0.59 -12.52 15.94 -4.01 -0.06 -12.59 16 11 C -0.15 -1.03 5.88 -20.08 -0.12 -1.14 16 12 C -0.08 -0.91 8.19 22.50 0.18 -0.72 16 13 C -0.11 -0.69 5.28 -19.78 -0.10 -0.80 16 14 C -0.06 -0.29 2.29 71.24 0.16 -0.13 16 15 O -0.54 -3.01 12.65 -148.98 -1.89 -4.90 16 16 Si 0.79 5.48 30.40 68.60 2.09 7.56 16 17 C 0.13 0.07 4.66 38.47 0.18 0.25 16 18 N -0.52 1.72 3.67 -745.08 -2.73 -1.01 16 19 C 0.02 -0.14 9.20 127.69 1.17 1.03 16 20 C 0.03 -0.15 9.38 127.69 1.20 1.05 16 21 C -0.15 0.47 8.53 22.36 0.19 0.66 16 22 C -0.06 0.12 9.53 22.50 0.21 0.34 16 23 C -0.17 -0.12 7.71 31.12 0.24 0.12 16 24 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.13 -1.31 8.12 -2.39 -0.02 -1.33 16 29 H 0.42 -2.93 6.75 -92.71 -0.63 -3.55 16 30 H 0.11 1.79 4.50 -2.91 -0.01 1.78 16 31 H 0.10 0.14 7.78 -2.39 -0.02 0.12 16 32 H 0.37 0.26 8.06 -74.06 -0.60 -0.34 16 33 H -0.30 -4.86 6.81 99.48 0.68 -4.18 16 34 H -0.28 -2.96 7.11 99.48 0.71 -2.25 16 35 H 0.07 -0.39 7.84 -2.39 -0.02 -0.41 16 36 H 0.04 -0.36 7.08 -2.39 -0.02 -0.38 16 37 H 0.09 -0.83 8.12 -2.38 -0.02 -0.85 16 38 H 0.09 -0.75 8.12 -2.38 -0.02 -0.77 16 39 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.04 -0.34 7.33 -2.39 -0.02 -0.35 16 41 H 0.16 -1.41 6.99 -2.91 -0.02 -1.43 16 42 H 0.17 -1.75 6.39 -2.91 -0.02 -1.77 16 43 H 0.12 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 Total: 0.00 -23.90 357.38 -0.93 -24.84 By element: Atomic # 1 Polarization: -16.35 SS G_CDS: -0.19 Total: -16.54 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.79 Total: 9.67 kcal Atomic # 7 Polarization: 0.59 SS G_CDS: -5.08 Total: -4.49 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -3.53 Total: -21.03 kcal Atomic # 14 Polarization: 5.48 SS G_CDS: 2.09 Total: 7.56 kcal Total: -23.90 -0.93 -24.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_13422196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.720 kcal (2) G-P(sol) polarization free energy of solvation -23.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds