Wall clock time and date at job start Sat Mar 6 2021 21:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00552 * 2 1 4 4 H 1.09008 * 112.84391 * 18.81040 * 3 2 1 5 5 C 1.53778 * 113.61628 * 149.99665 * 3 2 1 6 6 C 1.53788 * 87.07752 * 89.12261 * 5 3 2 7 7 H 1.08997 * 113.60983 * 270.79908 * 6 5 3 8 8 N 1.46496 * 113.61393 * 139.98432 * 6 5 3 9 9 C 1.34775 * 120.00321 * 156.52749 * 8 6 5 10 10 O 1.21616 * 119.99987 * 0.02562 * 9 8 6 11 11 C 1.47376 * 120.00301 * 179.97438 * 9 8 6 12 12 C 1.36415 * 127.19220 * 0.02818 * 11 9 8 13 13 O 1.33650 * 108.39814 * 179.97438 * 12 11 9 14 14 C 1.34214 * 110.90755 * 359.97438 * 13 12 11 15 15 C 1.50704 * 125.43622 * 179.73898 * 14 13 12 16 16 O 1.42905 * 109.47013 * 120.02765 * 15 14 13 17 17 Si 1.86301 * 109.47278 * 0.02562 * 15 14 13 18 18 C 1.34179 * 109.12411 * 0.02562 * 14 13 12 19 19 C 1.53777 * 87.17361 * 25.39015 * 6 5 3 20 20 H 1.08992 * 109.47753 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46945 * 299.99813 * 1 2 3 22 22 H 1.09007 * 109.47023 * 59.99126 * 1 2 3 23 23 H 1.09001 * 113.61952 * 334.57962 * 5 3 2 24 24 H 1.09004 * 113.69280 * 203.67949 * 5 3 2 25 25 H 0.97002 * 120.00324 * 336.52272 * 8 6 5 26 26 H 1.07998 * 125.80029 * 359.95521 * 12 11 9 27 27 H 1.08998 * 109.46839 * 240.02231 * 15 14 13 28 28 H 0.96699 * 113.99853 * 299.99567 * 16 15 14 29 29 H 1.48497 * 109.99983 * 58.68224 * 17 15 14 30 30 H 1.48501 * 109.99993 * 180.02562 * 17 15 14 31 31 H 1.08005 * 127.02000 * 179.97438 * 18 14 13 32 32 H 1.09006 * 113.61223 * 89.15468 * 19 6 5 33 33 H 1.08997 * 113.61757 * 220.05822 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 0.3239 5 6 3.3756 1.3718 0.7046 6 6 4.0061 1.0330 -0.6566 7 1 4.1097 -0.0372 -0.8354 8 7 5.2364 1.7780 -0.9351 9 6 6.1380 1.2877 -1.8087 10 8 5.9301 0.2271 -2.3661 11 6 7.3754 2.0375 -2.0893 12 6 7.7553 3.2325 -1.5520 13 8 8.9416 3.5686 -2.0676 14 6 9.3692 2.6363 -2.9333 15 6 10.6623 2.6885 -3.7055 16 8 11.4645 1.5550 -3.3684 17 14 11.5812 4.2504 -3.2733 18 6 8.4586 1.6535 -3.0060 19 6 2.7539 1.6474 -1.3040 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 3.5171 0.5955 1.4566 24 1 3.6323 2.3664 1.0693 25 1 5.4021 2.6242 -0.4908 26 1 7.1929 3.8090 -0.8326 27 1 10.4479 2.6769 -4.7742 28 1 11.6943 1.5007 -2.4306 29 1 11.8515 4.2933 -1.8138 30 1 12.8580 4.3141 -4.0289 31 1 8.5109 0.7623 -3.6140 32 1 2.8392 2.7180 -1.4900 33 1 2.3941 1.0934 -2.1710 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_13456056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:12:04 Heat of formation + Delta-G solvation = -62.131000 kcal Electronic energy + Delta-G solvation = -18344.314100 eV Core-core repulsion = 15146.902080 eV Total energy + Delta-G solvation = -3197.412020 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.72354 -41.20189 -39.76136 -38.17093 -37.16667 -34.58120 -33.62403 -31.72417 -27.74558 -26.89943 -26.72491 -25.94854 -24.00123 -22.32436 -21.25432 -20.68156 -19.34304 -18.20419 -17.71988 -17.55819 -17.36600 -16.91711 -16.40038 -16.25180 -15.91117 -15.83353 -15.59533 -14.88973 -14.66596 -14.22881 -13.99355 -13.62232 -13.50117 -13.34997 -13.13861 -12.95206 -12.42704 -12.14120 -12.02354 -11.46792 -11.22684 -10.99953 -10.77574 -10.53599 -10.15624 -9.78409 -4.90818 0.25683 0.79749 1.18964 1.53550 1.75425 1.96203 2.06383 2.21602 2.69704 3.20147 3.43028 3.51017 3.55001 3.58666 3.80929 3.97272 4.07752 4.25897 4.37076 4.43970 4.50767 4.51449 4.54042 4.68486 4.80553 4.83485 4.89006 4.94612 5.00746 5.03013 5.11552 5.44536 5.82043 6.26119 6.34191 6.47802 7.14636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.061 3.939 4 H 0.107 0.893 5 C -0.131 4.131 6 C 0.120 3.880 7 H 0.080 0.920 8 N -0.697 5.697 9 C 0.584 3.416 10 O -0.592 6.592 11 C -0.272 4.272 12 C 0.071 3.929 13 O -0.163 6.163 14 C -0.049 4.049 15 C -0.048 4.048 16 O -0.540 6.540 17 Si 0.796 3.204 18 C -0.154 4.154 19 C -0.167 4.167 20 H 0.089 0.911 21 H 0.058 0.942 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.134 0.866 25 H 0.419 0.581 26 H 0.267 0.733 27 H 0.147 0.853 28 H 0.391 0.609 29 H -0.285 1.285 30 H -0.289 1.289 31 H 0.141 0.859 32 H 0.118 0.882 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 9.189 4.144 10.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.002 3.998 4 H 0.124 0.876 5 C -0.169 4.169 6 C 0.015 3.985 7 H 0.098 0.902 8 N -0.349 5.349 9 C 0.373 3.627 10 O -0.473 6.473 11 C -0.276 4.276 12 C 0.000 4.000 13 O -0.058 6.058 14 C -0.097 4.097 15 C -0.156 4.156 16 O -0.349 6.349 17 Si 0.699 3.301 18 C -0.174 4.174 19 C -0.206 4.206 20 H 0.107 0.893 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.095 0.905 24 H 0.152 0.848 25 H 0.258 0.742 26 H 0.283 0.717 27 H 0.164 0.836 28 H 0.241 0.759 29 H -0.211 1.211 30 H -0.216 1.216 31 H 0.159 0.841 32 H 0.136 0.864 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.024 8.737 3.519 9.634 hybrid contribution -0.088 -1.338 0.513 1.436 sum -2.112 7.399 4.032 8.687 Atomic orbital electron populations 1.22973 0.79340 1.03637 1.01080 1.87871 1.21555 1.27871 1.94670 1.23067 0.95031 0.85517 0.96176 0.87561 1.23630 0.93083 1.04838 0.95370 1.22459 0.82183 0.96414 0.97452 0.90217 1.45645 1.19683 1.25571 1.43976 1.17646 0.82513 0.83948 0.78568 1.90792 1.78819 1.25089 1.52645 1.21471 0.98489 1.00066 1.07588 1.25354 0.83979 0.94164 0.96482 1.83718 1.32242 1.43489 1.46352 1.22686 0.99633 0.90054 0.97361 1.24750 0.88008 1.00879 1.01922 1.86651 1.70064 1.45522 1.32618 0.93426 0.79429 0.79317 0.77962 1.22554 0.92965 1.00719 1.01177 1.24040 0.95714 1.02776 0.98070 0.89274 0.92322 0.93279 0.90481 0.84760 0.74229 0.71742 0.83561 0.75931 1.21139 1.21559 0.84142 0.86411 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.63 10.63 -148.98 -1.58 -3.21 16 3 C 0.06 -0.13 4.38 31.18 0.14 0.01 16 4 H 0.11 -0.74 7.87 -2.38 -0.02 -0.76 16 5 C -0.13 0.60 7.66 31.12 0.24 0.84 16 6 C 0.12 0.20 4.15 45.52 0.19 0.39 16 7 H 0.08 0.82 7.50 -2.39 -0.02 0.80 16 8 N -0.70 0.92 5.35 -443.35 -2.37 -1.45 16 9 C 0.58 4.45 7.81 86.65 0.68 5.12 16 10 O -0.59 -11.30 16.60 -4.08 -0.07 -11.37 16 11 C -0.27 -0.84 6.31 -18.99 -0.12 -0.96 16 12 C 0.07 -0.43 11.61 67.39 0.78 0.36 16 13 O -0.16 0.46 8.89 4.49 0.04 0.50 16 14 C -0.05 -0.04 6.20 24.76 0.15 0.11 16 15 C -0.05 0.06 2.97 71.24 0.21 0.27 16 16 O -0.54 -1.24 12.87 -148.98 -1.92 -3.16 16 17 Si 0.80 -2.85 32.09 68.60 2.20 -0.64 16 18 C -0.15 -0.94 10.88 23.65 0.26 -0.68 16 19 C -0.17 0.12 7.72 31.18 0.24 0.36 16 20 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 21 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 22 H 0.05 -0.14 8.14 -2.38 -0.02 -0.16 16 23 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 24 H 0.13 -1.59 8.11 -2.39 -0.02 -1.61 16 25 H 0.42 -4.58 7.68 -92.71 -0.71 -5.29 16 26 H 0.27 -4.82 7.47 -2.91 -0.02 -4.85 16 27 H 0.15 -0.53 7.96 -2.39 -0.02 -0.55 16 28 H 0.39 -1.38 8.70 -74.06 -0.64 -2.02 16 29 H -0.29 -0.35 7.11 99.48 0.71 0.35 16 30 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 31 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 32 H 0.12 -0.69 8.14 -2.38 -0.02 -0.71 16 33 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 Total: 0.00 -26.52 293.39 0.12 -26.41 By element: Atomic # 1 Polarization: -13.88 SS G_CDS: -0.18 Total: -14.06 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.00 Total: 6.99 kcal Atomic # 7 Polarization: 0.92 SS G_CDS: -2.37 Total: -1.45 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -3.53 Total: -17.25 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.20 Total: -0.64 kcal Total: -26.52 0.12 -26.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_13456056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.725 kcal (2) G-P(sol) polarization free energy of solvation -26.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds