Wall clock time and date at job start Sat Mar 6 2021 21:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99944 * 2 1 4 4 H 1.09000 * 112.84683 * 341.18557 * 3 2 1 5 5 C 1.53774 * 113.61630 * 112.50011 * 3 2 1 6 6 C 1.53782 * 87.08161 * 139.98060 * 5 3 2 7 7 H 1.09002 * 113.68975 * 220.00709 * 6 5 3 8 8 N 1.46498 * 113.61718 * 89.11276 * 6 5 3 9 9 C 1.34777 * 119.99828 * 107.22525 * 8 6 5 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 6 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 6 12 12 C 1.53535 * 109.82082 * 278.21226 * 11 9 8 13 13 C 1.53039 * 108.56161 * 179.50716 * 12 11 9 14 14 C 1.50207 * 110.31649 * 49.57153 * 13 12 11 15 15 C 1.50702 * 118.54661 * 159.92153 * 14 13 12 16 16 O 1.42905 * 109.46821 * 70.02347 * 15 14 13 17 17 Si 1.86298 * 109.47106 * 190.01950 * 15 14 13 18 18 C 1.31111 * 122.90337 * 339.94986 * 14 13 12 19 19 N 1.38919 * 121.85260 * 0.40174 * 18 14 13 20 20 C 1.53781 * 87.08215 * 334.56639 * 6 5 3 21 21 H 1.08996 * 109.46923 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47328 * 300.00586 * 1 2 3 23 23 H 1.09006 * 109.46873 * 60.00387 * 1 2 3 24 24 H 1.08999 * 113.61704 * 25.42848 * 5 3 2 25 25 H 1.09006 * 113.61200 * 254.52533 * 5 3 2 26 26 H 0.97001 * 120.00384 * 287.50972 * 8 6 5 27 27 H 1.09005 * 109.80912 * 39.13754 * 11 9 8 28 28 H 1.09000 * 109.62786 * 299.23160 * 12 11 9 29 29 H 1.09001 * 109.62604 * 59.78758 * 12 11 9 30 30 H 1.08998 * 109.33315 * 289.30918 * 13 12 11 31 31 H 1.09005 * 109.32871 * 169.83173 * 13 12 11 32 32 H 1.08997 * 109.47237 * 310.02590 * 15 14 13 33 33 H 0.96707 * 114.00040 * 59.99402 * 16 15 14 34 34 H 1.48503 * 109.99730 * 58.68462 * 17 15 14 35 35 H 1.48502 * 109.99969 * 180.02562 * 17 15 14 36 36 H 1.08005 * 119.07196 * 180.42601 * 18 14 13 37 37 H 0.97001 * 120.55966 * 166.71066 * 19 18 14 38 38 H 1.08995 * 113.61890 * 139.98284 * 20 6 5 39 39 H 1.08997 * 113.61580 * 270.88803 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3240 5 6 2.7534 1.6490 1.3017 6 6 3.8227 2.3182 0.4222 7 1 4.8431 2.1410 0.7621 8 7 3.5532 3.7310 0.1434 9 6 4.2898 4.6882 0.7415 10 8 5.1789 4.3800 1.5065 11 6 4.0086 6.1417 0.4596 12 6 4.6848 6.5574 -0.8547 13 6 4.3711 8.0318 -1.1188 14 6 4.6568 8.8534 0.1058 15 6 4.8608 10.3379 -0.0544 16 8 3.6180 10.9554 -0.3955 17 14 5.4915 11.0542 1.5455 18 6 4.7370 8.3359 1.3078 19 7 4.5694 6.9754 1.5330 20 6 3.3756 1.3719 -0.7045 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 3.1165 0.7742 1.8411 25 1 2.2139 2.3479 1.9410 26 1 2.8421 3.9776 -0.4684 27 1 2.9328 6.3031 0.3900 28 1 5.7631 6.4221 -0.7704 29 1 4.2998 5.9490 -1.6730 30 1 3.3192 8.1348 -1.3851 31 1 4.9863 8.3893 -1.9447 32 1 5.5871 10.5215 -0.8461 33 1 2.9231 10.8324 0.2657 34 1 6.7676 10.3978 1.9277 35 1 5.6962 12.5179 1.4009 36 1 4.9387 8.9858 2.1465 37 1 4.8179 6.5821 2.3841 38 1 3.3385 1.8470 -1.6848 39 1 3.9088 0.4213 -0.7137 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12343576_15413834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:12:11 Heat of formation + Delta-G solvation = -60.143956 kcal Electronic energy + Delta-G solvation = -20881.133758 eV Core-core repulsion = 17598.677468 eV Total energy + Delta-G solvation = -3282.456290 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72582 -40.50789 -39.28505 -37.52102 -37.17380 -34.32475 -33.26559 -32.75797 -28.17326 -27.47717 -26.88495 -25.58144 -25.01624 -23.72412 -22.08273 -20.76981 -19.46067 -19.08896 -18.29039 -17.73791 -17.11725 -16.89862 -16.70483 -16.30287 -16.11745 -15.95780 -15.65565 -15.23179 -15.13339 -14.52702 -14.24590 -14.16845 -14.00511 -13.70182 -13.59336 -13.43642 -13.07506 -12.98964 -12.30762 -12.14646 -12.08798 -11.99534 -11.85043 -11.65439 -11.31567 -10.91252 -10.57058 -10.25958 -10.14520 -8.51810 -4.99067 1.28359 1.40249 1.42143 1.67871 1.74813 2.06903 2.53913 2.73731 3.29513 3.37724 3.42116 3.59717 3.69077 3.73126 3.75884 3.79663 3.91278 4.20783 4.25130 4.31525 4.34416 4.36493 4.54306 4.62067 4.64671 4.66363 4.67850 4.69100 4.77314 4.83122 4.88565 4.93541 5.14888 5.22586 5.34389 5.50398 6.13092 6.14391 6.30367 6.73569 6.78165 6.98572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.060 3.940 4 H 0.086 0.914 5 C -0.166 4.166 6 C 0.120 3.880 7 H 0.112 0.888 8 N -0.710 5.710 9 C 0.515 3.485 10 O -0.526 6.526 11 C 0.138 3.862 12 C -0.128 4.128 13 C -0.051 4.051 14 C -0.280 4.280 15 C -0.042 4.042 16 O -0.548 6.548 17 Si 0.665 3.335 18 C 0.145 3.855 19 N -0.732 5.732 20 C -0.142 4.142 21 H 0.087 0.913 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.403 0.597 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.375 0.625 34 H -0.260 1.260 35 H -0.258 1.258 36 H 0.134 0.866 37 H 0.409 0.591 38 H 0.080 0.920 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.141 -1.240 -0.254 5.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.002 3.998 4 H 0.104 0.896 5 C -0.205 4.205 6 C 0.014 3.986 7 H 0.130 0.870 8 N -0.362 5.362 9 C 0.301 3.699 10 O -0.401 6.401 11 C 0.029 3.971 12 C -0.167 4.167 13 C -0.088 4.088 14 C -0.290 4.290 15 C -0.155 4.155 16 O -0.353 6.353 17 Si 0.568 3.432 18 C 0.025 3.975 19 N -0.365 5.365 20 C -0.180 4.180 21 H 0.106 0.894 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.120 0.880 25 H 0.092 0.908 26 H 0.237 0.763 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.221 0.779 34 H -0.185 1.185 35 H -0.183 1.183 36 H 0.151 0.849 37 H 0.246 0.754 38 H 0.098 0.902 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.435 -1.085 0.083 3.604 hybrid contribution -0.348 -0.087 -0.512 0.625 sum -3.783 -1.172 -0.429 3.984 Atomic orbital electron populations 1.22826 0.80816 1.03142 1.00010 1.87965 1.19939 1.26959 1.94531 1.23825 0.93811 0.85622 0.96549 0.89569 1.23980 0.97659 1.01340 0.97482 1.21665 1.00590 0.79441 0.96880 0.86971 1.45642 1.37246 1.05507 1.47833 1.20645 0.81494 0.87632 0.80157 1.90750 1.30939 1.83099 1.35309 1.20984 0.99033 0.87170 0.89953 1.21887 1.01821 0.98027 0.94946 1.19930 1.01655 0.91497 0.95745 1.20966 1.17469 0.96516 0.94044 1.24720 0.90178 0.91273 1.09280 1.86481 1.21938 1.76758 1.50075 0.95375 0.85356 0.80135 0.82317 1.20308 0.96905 0.84395 0.95914 1.44275 1.70962 1.04915 1.16380 1.23623 0.95806 1.00517 0.98088 0.89418 0.93920 0.93884 0.87975 0.90779 0.76253 0.89040 0.90535 0.90255 0.91190 0.90927 0.87838 0.77853 1.18476 1.18308 0.84932 0.75365 0.90161 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 101.05 1.10 1.05 16 2 O -0.38 -0.30 10.71 -35.23 -0.38 -0.68 16 3 C 0.06 -0.09 4.19 -25.92 -0.11 -0.20 16 4 H 0.09 -0.27 7.87 -51.93 -0.41 -0.68 16 5 C -0.17 0.18 7.71 -25.92 -0.20 -0.02 16 6 C 0.12 -0.15 4.32 -67.12 -0.29 -0.44 16 7 H 0.11 0.06 7.47 -51.93 -0.39 -0.32 16 8 N -0.71 1.61 5.26 -53.02 -0.28 1.33 16 9 C 0.52 0.06 7.08 -10.98 -0.08 -0.02 16 10 O -0.53 -2.21 15.71 5.55 0.09 -2.12 16 11 C 0.14 -0.20 3.36 -68.52 -0.23 -0.43 16 12 C -0.13 0.17 5.47 -26.43 -0.14 0.03 16 13 C -0.05 0.03 5.85 -28.10 -0.16 -0.13 16 14 C -0.28 0.06 5.37 -101.33 -0.54 -0.48 16 15 C -0.04 -0.01 2.81 36.01 0.10 0.09 16 16 O -0.55 -0.34 12.88 -35.23 -0.45 -0.79 16 17 Si 0.67 -0.30 29.72 -169.99 -5.05 -5.36 16 18 C 0.15 -0.11 9.61 -16.08 -0.15 -0.27 16 19 N -0.73 0.34 5.46 -55.34 -0.30 0.04 16 20 C -0.14 0.29 7.66 -25.92 -0.20 0.09 16 21 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 22 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 23 H 0.04 -0.11 8.14 -51.93 -0.42 -0.53 16 24 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 25 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.40 -1.98 8.70 -40.82 -0.36 -2.34 16 27 H 0.09 -0.29 8.14 -51.93 -0.42 -0.72 16 28 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 30 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.10 0.12 7.96 -51.93 -0.41 -0.30 16 33 H 0.37 -1.25 8.70 45.56 0.40 -0.85 16 34 H -0.26 -0.59 7.11 56.52 0.40 -0.19 16 35 H -0.26 -0.81 7.11 56.52 0.40 -0.41 16 36 H 0.13 -0.34 4.50 -52.48 -0.24 -0.58 16 37 H 0.41 -0.09 8.12 -40.82 -0.33 -0.42 16 38 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 39 H 0.11 -0.16 8.14 -51.93 -0.42 -0.58 16 LS Contribution 319.25 15.07 4.81 4.81 Total: 0.00 -7.62 319.25 -8.49 -16.11 By element: Atomic # 1 Polarization: -6.62 SS G_CDS: -6.01 Total: -12.63 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.92 Total: -0.72 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -0.58 Total: 1.37 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: -0.74 Total: -3.59 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: -5.05 Total: -5.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -7.62 -8.49 -16.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_15413834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.031 kcal (2) G-P(sol) polarization free energy of solvation -7.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds