Wall clock time and date at job start Sat Mar 6 2021 21:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99761 * 2 1 4 4 H 1.08999 * 112.90509 * 341.25284 * 3 2 1 5 5 C 1.53777 * 113.61535 * 112.50062 * 3 2 1 6 6 C 1.53777 * 87.08168 * 139.97734 * 5 3 2 7 7 H 1.08998 * 113.69642 * 220.00852 * 6 5 3 8 8 N 1.46501 * 113.61004 * 89.11895 * 6 5 3 9 9 C 1.34772 * 120.00239 * 107.50385 * 8 6 5 10 10 O 1.21287 * 119.99876 * 0.02562 * 9 8 6 11 11 C 1.50705 * 120.00345 * 179.97438 * 9 8 6 12 12 C 1.53030 * 109.32988 * 179.97438 * 11 9 8 13 13 C 1.53546 * 108.56134 * 190.16800 * 12 11 9 14 14 N 1.47026 * 107.65374 * 60.95385 * 13 12 11 15 15 C 1.38925 * 118.88519 * 316.33449 * 14 13 12 16 16 C 1.31111 * 121.84663 * 13.29423 * 15 14 13 17 17 C 1.50707 * 118.54806 * 179.59906 * 16 15 14 18 18 O 1.42901 * 109.46732 * 250.00585 * 17 16 15 19 19 Si 1.86304 * 109.46814 * 9.99625 * 17 16 15 20 20 C 1.53772 * 113.61122 * 210.00002 * 3 2 1 21 21 H 1.08999 * 109.47309 * 60.00301 * 1 2 3 22 22 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47225 * 300.00173 * 1 2 3 24 24 H 1.09002 * 113.61520 * 25.43241 * 5 3 2 25 25 H 1.08998 * 113.61529 * 254.53295 * 5 3 2 26 26 H 0.97008 * 119.99679 * 287.49658 * 8 6 5 27 27 H 1.08997 * 109.18496 * 299.57173 * 11 9 8 28 28 H 1.09006 * 109.62445 * 70.45234 * 12 11 9 29 29 H 1.09004 * 109.62710 * 309.89535 * 12 11 9 30 30 H 1.08999 * 109.82352 * 180.48646 * 13 12 11 31 31 H 1.09001 * 109.82300 * 301.41317 * 13 12 11 32 32 H 0.96999 * 120.56091 * 136.35851 * 14 13 12 33 33 H 1.08004 * 119.07972 * 193.32229 * 15 14 13 34 34 H 1.08992 * 109.47443 * 129.99983 * 17 16 15 35 35 H 0.96702 * 113.99281 * 180.02562 * 18 17 16 36 36 H 1.48500 * 110.00048 * 178.68325 * 19 17 16 37 37 H 1.48492 * 110.00411 * 300.00520 * 19 17 16 38 38 H 1.09004 * 113.61593 * 105.47539 * 20 3 2 39 39 H 1.09002 * 113.61937 * 334.56920 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0797 -0.3227 5 6 2.7534 1.6490 1.3017 6 6 3.8227 2.3182 0.4222 7 1 4.8431 2.1410 0.7621 8 7 3.5532 3.7310 0.1436 9 6 4.2933 4.6881 0.7374 10 8 5.1829 4.3797 1.5021 11 6 4.0165 6.1414 0.4504 12 6 4.9920 7.0099 1.2479 13 6 4.5380 8.4733 1.1473 14 7 3.1916 8.5636 1.7309 15 6 2.2566 7.5856 1.4157 16 6 2.5998 6.4627 0.8323 17 6 1.5256 5.4491 0.5324 18 8 1.6878 4.3160 1.3879 19 14 -0.1482 6.2133 0.8248 20 6 3.3755 1.3719 -0.7045 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.1166 0.7741 1.8410 25 1 2.2139 2.3477 1.9411 26 1 2.8420 3.9776 -0.4683 27 1 4.1537 6.3287 -0.6146 28 1 5.9951 6.9087 0.8336 29 1 4.9911 6.6973 2.2921 30 1 5.2249 9.1124 1.7022 31 1 4.5091 8.7803 0.1018 32 1 2.9598 9.2938 2.3258 33 1 1.2177 7.7551 1.6576 34 1 1.6041 5.1334 -0.5078 35 1 1.0293 3.6215 1.2496 36 1 -1.2170 5.2341 0.5022 37 1 -0.2679 6.6481 2.2396 38 1 3.3384 1.8472 -1.6848 39 1 3.9088 0.4213 -0.7138 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12343576_15608500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:12:13 Heat of formation + Delta-G solvation = -36.346898 kcal Electronic energy + Delta-G solvation = -22428.008158 eV Core-core repulsion = 19146.583786 eV Total energy + Delta-G solvation = -3281.424373 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68080 -40.30812 -38.87833 -37.90899 -37.03924 -34.06251 -33.00059 -32.81183 -27.96431 -27.42020 -26.66625 -26.12658 -24.63264 -23.19534 -21.87700 -20.50326 -19.32329 -18.79698 -18.53210 -18.17485 -17.37493 -16.84602 -16.56546 -16.36251 -16.07354 -15.75475 -15.21315 -15.06623 -14.82409 -14.53130 -14.15449 -13.94895 -13.68526 -13.53768 -13.40729 -13.27351 -13.17556 -12.90797 -12.33330 -12.15277 -11.87616 -11.82201 -11.69197 -11.46387 -11.34777 -10.55973 -10.45702 -10.38401 -9.65788 -8.52605 -5.02711 1.15868 1.26585 1.50225 1.86782 2.03825 2.35178 2.51329 2.82459 3.33402 3.52469 3.59371 3.66501 3.75432 3.85720 3.93019 4.00472 4.09511 4.22783 4.30465 4.35045 4.39003 4.39905 4.51830 4.57143 4.71159 4.72243 4.78160 4.83765 4.85467 5.02233 5.12235 5.16605 5.20256 5.33768 5.39827 5.76289 6.22718 6.23706 6.38408 6.74782 6.74990 7.54594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.167 4.167 6 C 0.127 3.873 7 H 0.106 0.894 8 N -0.695 5.695 9 C 0.541 3.459 10 O -0.545 6.545 11 C -0.040 4.040 12 C -0.120 4.120 13 C 0.119 3.881 14 N -0.746 5.746 15 C 0.159 3.841 16 C -0.238 4.238 17 C -0.058 4.058 18 O -0.524 6.524 19 Si 0.666 3.334 20 C -0.144 4.144 21 H 0.041 0.959 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.396 0.604 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.404 0.596 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.364 0.636 36 H -0.264 1.264 37 H -0.258 1.258 38 H 0.076 0.924 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 4.468 -4.160 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.001 3.999 4 H 0.098 0.902 5 C -0.206 4.206 6 C 0.021 3.979 7 H 0.124 0.876 8 N -0.348 5.348 9 C 0.328 3.672 10 O -0.422 6.422 11 C -0.061 4.061 12 C -0.159 4.159 13 C -0.006 4.006 14 N -0.376 5.376 15 C 0.036 3.964 16 C -0.248 4.248 17 C -0.169 4.169 18 O -0.332 6.332 19 Si 0.569 3.431 20 C -0.182 4.182 21 H 0.060 0.940 22 H 0.105 0.895 23 H 0.059 0.941 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.233 0.767 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.239 0.761 33 H 0.150 0.850 34 H 0.080 0.920 35 H 0.213 0.787 36 H -0.190 1.190 37 H -0.183 1.183 38 H 0.095 0.905 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.912 4.383 -3.032 6.073 hybrid contribution -0.847 -0.721 0.181 1.127 sum -3.759 3.662 -2.851 5.972 Atomic orbital electron populations 1.22812 0.81102 1.03096 0.99822 1.87976 1.19656 1.27187 1.94576 1.23835 0.93667 0.85126 0.97259 0.90216 1.24066 0.98112 1.01120 0.97307 1.21486 1.00087 0.80433 0.95914 0.87557 1.45742 1.36734 1.04776 1.47555 1.20257 0.80391 0.87312 0.79282 1.90688 1.32502 1.83373 1.35666 1.19720 0.93297 0.91959 1.01172 1.21718 0.98242 0.93825 1.02077 1.21676 0.83407 0.96791 0.98681 1.44582 1.11305 1.28508 1.53219 1.20420 0.93277 0.88808 0.93879 1.19483 0.93591 0.95381 1.16363 1.24543 1.07109 0.90091 0.95149 1.86951 1.54666 1.28818 1.62717 0.95321 0.74965 0.87733 0.85128 1.23635 0.95745 1.00655 0.98201 0.94015 0.89485 0.94057 0.88670 0.89608 0.76686 0.88698 0.90060 0.90165 0.89854 0.91751 0.76137 0.84968 0.92034 0.78742 1.18974 1.18287 0.90548 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 2 O -0.38 -0.65 10.71 -35.23 -0.38 -1.03 16 3 C 0.06 -0.02 4.04 -25.93 -0.10 -0.12 16 4 H 0.08 -0.18 7.26 -51.93 -0.38 -0.56 16 5 C -0.17 -0.13 7.17 -25.92 -0.19 -0.32 16 6 C 0.13 0.14 4.33 -67.12 -0.29 -0.15 16 7 H 0.11 0.34 7.46 -51.93 -0.39 -0.05 16 8 N -0.70 -0.39 3.06 -53.02 -0.16 -0.55 16 9 C 0.54 1.75 6.39 -10.98 -0.07 1.68 16 10 O -0.55 -4.10 15.41 5.55 0.09 -4.02 16 11 C -0.04 -0.02 2.75 -93.15 -0.26 -0.28 16 12 C -0.12 -0.09 4.91 -26.43 -0.13 -0.22 16 13 C 0.12 -0.22 7.16 -3.47 -0.02 -0.24 16 14 N -0.75 1.24 5.83 -60.68 -0.35 0.88 16 15 C 0.16 -0.13 9.62 -16.08 -0.15 -0.29 16 16 C -0.24 0.06 5.18 -101.33 -0.52 -0.47 16 17 C -0.06 0.09 1.73 36.01 0.06 0.16 16 18 O -0.52 -0.01 7.53 -35.23 -0.27 -0.28 16 19 Si 0.67 -1.30 29.91 -169.99 -5.08 -6.38 16 20 C -0.14 0.05 7.66 -25.92 -0.20 -0.15 16 21 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16 22 H 0.09 -0.11 8.14 -51.93 -0.42 -0.54 16 23 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 24 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.09 0.10 5.39 -51.93 -0.28 -0.18 16 26 H 0.40 -0.66 5.54 -40.82 -0.23 -0.89 16 27 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 28 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.08 0.28 7.77 -51.93 -0.40 -0.12 16 30 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 31 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 32 H 0.40 -1.37 8.96 -40.82 -0.37 -1.74 16 33 H 0.13 -0.27 4.34 -52.48 -0.23 -0.50 16 34 H 0.06 -0.24 6.39 -51.93 -0.33 -0.57 16 35 H 0.36 -0.86 6.74 45.56 0.31 -0.56 16 36 H -0.26 -0.10 7.11 56.52 0.40 0.30 16 37 H -0.26 -0.35 6.89 56.52 0.39 0.04 16 38 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 39 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 299.49 15.07 4.51 4.51 Total: 0.00 -7.76 299.49 -8.15 -15.92 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: -5.73 Total: -9.73 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.78 Total: 0.68 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -0.52 Total: 0.33 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.56 Total: -5.33 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.08 Total: -6.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -7.76 -8.15 -15.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_15608500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.431 kcal (2) G-P(sol) polarization free energy of solvation -7.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds