Wall clock time and date at job start Sat Mar 6 2021 21:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99761 * 2 1 4 4 H 1.08999 * 112.90509 * 341.25284 * 3 2 1 5 5 C 1.53777 * 113.61535 * 112.50062 * 3 2 1 6 6 C 1.53777 * 87.08168 * 139.97734 * 5 3 2 7 7 H 1.08998 * 113.69642 * 220.00852 * 6 5 3 8 8 N 1.46501 * 113.61004 * 89.11895 * 6 5 3 9 9 C 1.34772 * 120.00239 * 107.50385 * 8 6 5 10 10 O 1.21287 * 119.99876 * 0.02562 * 9 8 6 11 11 C 1.50705 * 120.00345 * 179.97438 * 9 8 6 12 12 C 1.53030 * 109.32988 * 179.97438 * 11 9 8 13 13 C 1.53546 * 108.56134 * 190.16800 * 12 11 9 14 14 N 1.47026 * 107.65374 * 60.95385 * 13 12 11 15 15 C 1.38925 * 118.88519 * 316.33449 * 14 13 12 16 16 C 1.31111 * 121.84663 * 13.29423 * 15 14 13 17 17 C 1.50707 * 118.54806 * 179.59906 * 16 15 14 18 18 O 1.42901 * 109.46732 * 250.00585 * 17 16 15 19 19 Si 1.86304 * 109.46814 * 9.99625 * 17 16 15 20 20 C 1.53772 * 113.61122 * 210.00002 * 3 2 1 21 21 H 1.08999 * 109.47309 * 60.00301 * 1 2 3 22 22 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47225 * 300.00173 * 1 2 3 24 24 H 1.09002 * 113.61520 * 25.43241 * 5 3 2 25 25 H 1.08998 * 113.61529 * 254.53295 * 5 3 2 26 26 H 0.97008 * 119.99679 * 287.49658 * 8 6 5 27 27 H 1.08997 * 109.18496 * 299.57173 * 11 9 8 28 28 H 1.09006 * 109.62445 * 70.45234 * 12 11 9 29 29 H 1.09004 * 109.62710 * 309.89535 * 12 11 9 30 30 H 1.08999 * 109.82352 * 180.48646 * 13 12 11 31 31 H 1.09001 * 109.82300 * 301.41317 * 13 12 11 32 32 H 0.96999 * 120.56091 * 136.35851 * 14 13 12 33 33 H 1.08004 * 119.07972 * 193.32229 * 15 14 13 34 34 H 1.08992 * 109.47443 * 129.99983 * 17 16 15 35 35 H 0.96702 * 113.99281 * 180.02562 * 18 17 16 36 36 H 1.48500 * 110.00048 * 178.68325 * 19 17 16 37 37 H 1.48492 * 110.00411 * 300.00520 * 19 17 16 38 38 H 1.09004 * 113.61593 * 105.47539 * 20 3 2 39 39 H 1.09002 * 113.61937 * 334.56920 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0797 -0.3227 5 6 2.7534 1.6490 1.3017 6 6 3.8227 2.3182 0.4222 7 1 4.8431 2.1410 0.7621 8 7 3.5532 3.7310 0.1436 9 6 4.2933 4.6881 0.7374 10 8 5.1829 4.3797 1.5021 11 6 4.0165 6.1414 0.4504 12 6 4.9920 7.0099 1.2479 13 6 4.5380 8.4733 1.1473 14 7 3.1916 8.5636 1.7309 15 6 2.2566 7.5856 1.4157 16 6 2.5998 6.4627 0.8323 17 6 1.5256 5.4491 0.5324 18 8 1.6878 4.3160 1.3879 19 14 -0.1482 6.2133 0.8248 20 6 3.3755 1.3719 -0.7045 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.1166 0.7741 1.8410 25 1 2.2139 2.3477 1.9411 26 1 2.8420 3.9776 -0.4683 27 1 4.1537 6.3287 -0.6146 28 1 5.9951 6.9087 0.8336 29 1 4.9911 6.6973 2.2921 30 1 5.2249 9.1124 1.7022 31 1 4.5091 8.7803 0.1018 32 1 2.9598 9.2938 2.3258 33 1 1.2177 7.7551 1.6576 34 1 1.6041 5.1334 -0.5078 35 1 1.0293 3.6215 1.2496 36 1 -1.2170 5.2341 0.5022 37 1 -0.2679 6.6481 2.2396 38 1 3.3384 1.8472 -1.6848 39 1 3.9088 0.4213 -0.7138 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_15608500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:12:13 Heat of formation + Delta-G solvation = -37.465380 kcal Electronic energy + Delta-G solvation = -22428.056659 eV Core-core repulsion = 19146.583786 eV Total energy + Delta-G solvation = -3281.472874 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.77287 -40.31564 -38.98584 -37.88669 -37.08568 -34.17922 -33.00248 -32.76877 -27.92228 -27.37157 -26.69362 -26.08277 -24.64182 -23.14561 -21.99840 -20.58731 -19.28765 -18.72986 -18.48979 -18.22336 -17.42528 -16.87510 -16.57076 -16.41511 -16.05839 -15.80527 -15.21245 -15.08921 -14.74920 -14.54888 -14.15998 -13.93874 -13.69621 -13.52779 -13.48046 -13.27740 -13.18997 -12.93339 -12.31602 -12.14884 -11.89784 -11.83655 -11.69074 -11.50632 -11.26742 -10.75793 -10.47545 -10.33736 -9.79368 -8.42315 -4.87599 1.23361 1.38940 1.61176 1.82189 2.00735 2.27020 2.66419 2.86132 3.44317 3.48571 3.57954 3.68663 3.82457 3.88628 3.95296 4.01258 4.22036 4.25239 4.38330 4.40621 4.48685 4.49491 4.52909 4.69917 4.75100 4.79975 4.81800 4.83965 4.87901 5.00015 5.03455 5.10266 5.22506 5.29949 5.46845 5.65238 6.27442 6.33527 6.57011 6.66428 6.94929 7.39018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.067 3.933 4 H 0.107 0.893 5 C -0.168 4.168 6 C 0.123 3.877 7 H 0.078 0.922 8 N -0.677 5.677 9 C 0.533 3.467 10 O -0.599 6.599 11 C -0.038 4.038 12 C -0.120 4.120 13 C 0.123 3.877 14 N -0.747 5.747 15 C 0.156 3.844 16 C -0.253 4.253 17 C -0.067 4.067 18 O -0.546 6.546 19 Si 0.748 3.252 20 C -0.135 4.135 21 H 0.056 0.944 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.409 0.591 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.412 0.588 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.374 0.626 36 H -0.292 1.292 37 H -0.307 1.307 38 H 0.094 0.906 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 5.396 -5.807 9.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.009 3.991 4 H 0.124 0.876 5 C -0.207 4.207 6 C 0.016 3.984 7 H 0.096 0.904 8 N -0.330 5.330 9 C 0.321 3.679 10 O -0.480 6.480 11 C -0.059 4.059 12 C -0.159 4.159 13 C -0.001 4.001 14 N -0.377 5.377 15 C 0.033 3.967 16 C -0.263 4.263 17 C -0.177 4.177 18 O -0.355 6.355 19 Si 0.656 3.344 20 C -0.174 4.174 21 H 0.075 0.925 22 H 0.107 0.893 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.250 0.750 27 H 0.137 0.863 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.248 0.752 33 H 0.159 0.841 34 H 0.109 0.891 35 H 0.224 0.776 36 H -0.220 1.220 37 H -0.236 1.236 38 H 0.113 0.887 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.095 5.315 -4.724 8.206 hybrid contribution -0.501 -1.039 0.773 1.389 sum -4.597 4.276 -3.951 7.418 Atomic orbital electron populations 1.22963 0.79933 1.03672 1.00840 1.87945 1.21103 1.28246 1.94634 1.23873 0.93998 0.85259 0.95964 0.87553 1.24009 0.98297 1.00435 0.97911 1.21412 0.98772 0.81098 0.97093 0.90370 1.45596 1.36361 1.04146 1.46904 1.20839 0.79721 0.88770 0.78532 1.90662 1.34893 1.84277 1.38164 1.19765 0.93847 0.89835 1.02442 1.21672 0.98579 0.95771 0.99882 1.21710 0.83465 0.95030 0.99902 1.44670 1.11218 1.28583 1.53226 1.20617 0.93908 0.88949 0.93223 1.19567 0.93355 0.96044 1.17373 1.24745 1.06825 0.89614 0.96473 1.86937 1.55428 1.29617 1.63543 0.94477 0.72906 0.85524 0.81509 1.23557 0.95513 0.99864 0.98425 0.92529 0.89288 0.93447 0.90170 0.89929 0.75035 0.86331 0.90331 0.93706 0.88611 0.90096 0.75172 0.84076 0.89056 0.77615 1.21959 1.23586 0.88749 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -1.24 10.71 -148.98 -1.60 -2.84 16 3 C 0.07 -0.08 4.04 31.12 0.13 0.04 16 4 H 0.11 -0.72 7.26 -2.39 -0.02 -0.74 16 5 C -0.17 -0.44 7.17 31.12 0.22 -0.22 16 6 C 0.12 0.40 4.33 45.52 0.20 0.59 16 7 H 0.08 0.72 7.46 -2.39 -0.02 0.70 16 8 N -0.68 -0.82 3.06 -440.03 -1.35 -2.16 16 9 C 0.53 4.01 6.39 87.66 0.56 4.57 16 10 O -0.60 -10.62 15.41 -3.05 -0.05 -10.66 16 11 C -0.04 -0.04 2.75 -12.43 -0.03 -0.08 16 12 C -0.12 -0.28 4.91 30.79 0.15 -0.13 16 13 C 0.12 -0.53 7.16 86.46 0.62 0.09 16 14 N -0.75 2.91 5.83 -345.90 -2.02 0.89 16 15 C 0.16 -0.35 9.62 83.42 0.80 0.46 16 16 C -0.25 0.28 5.18 -16.75 -0.09 0.19 16 17 C -0.07 0.30 1.73 71.24 0.12 0.42 16 18 O -0.55 0.11 7.53 -148.98 -1.12 -1.01 16 19 Si 0.75 -3.50 29.91 68.60 2.05 -1.45 16 20 C -0.14 0.13 7.66 31.12 0.24 0.37 16 21 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 22 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 23 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.08 0.27 5.39 -2.39 -0.01 0.26 16 26 H 0.41 -1.97 5.54 -92.70 -0.51 -2.49 16 27 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.08 0.18 8.14 -2.38 -0.02 0.16 16 29 H 0.04 0.43 7.77 -2.39 -0.02 0.41 16 30 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.41 -3.05 8.96 -92.71 -0.83 -3.88 16 33 H 0.14 -0.65 4.34 -2.91 -0.01 -0.67 16 34 H 0.09 -0.95 6.39 -2.39 -0.02 -0.97 16 35 H 0.37 -2.06 6.74 -74.06 -0.50 -2.56 16 36 H -0.29 0.01 7.11 99.48 0.71 0.72 16 37 H -0.31 -1.08 6.89 99.48 0.69 -0.40 16 38 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 Total: 0.00 -21.03 299.49 -0.67 -21.70 By element: Atomic # 1 Polarization: -11.21 SS G_CDS: -0.74 Total: -11.95 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 4.15 Total: 7.48 kcal Atomic # 7 Polarization: 2.09 SS G_CDS: -3.36 Total: -1.27 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -2.76 Total: -14.51 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.05 Total: -1.45 kcal Total: -21.03 -0.67 -21.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_15608500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.764 kcal (2) G-P(sol) polarization free energy of solvation -21.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds