Wall clock time and date at job start Sat Mar 6 2021 21:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99991 * 2 1 4 4 H 1.08999 * 112.84995 * 18.80524 * 3 2 1 5 5 C 1.53779 * 113.61486 * 149.99680 * 3 2 1 6 6 C 1.53787 * 87.07963 * 89.11554 * 5 3 2 7 7 H 1.08994 * 113.61447 * 270.88515 * 6 5 3 8 8 N 1.46496 * 113.61210 * 139.97940 * 6 5 3 9 9 C 1.34774 * 120.00099 * 155.00440 * 8 6 5 10 10 O 1.21632 * 119.99959 * 359.97438 * 9 8 6 11 11 C 1.47264 * 120.00374 * 180.02562 * 9 8 6 12 12 C 1.36338 * 126.96865 * 180.02562 * 11 9 8 13 13 C 1.51001 * 126.79439 * 359.97438 * 12 11 9 14 14 C 1.53387 * 108.25631 * 164.33435 * 13 12 11 15 15 C 1.53163 * 109.04892 * 48.45515 * 14 13 12 16 16 C 1.53132 * 109.52450 * 290.43182 * 15 14 13 17 17 N 1.35210 * 108.65969 * 179.97438 * 12 11 9 18 18 C 1.36427 * 109.90132 * 359.96657 * 17 12 11 19 19 C 1.50699 * 125.49637 * 180.02562 * 18 17 12 20 20 O 1.42900 * 109.46897 * 330.00291 * 19 18 17 21 21 Si 1.86297 * 109.47196 * 210.00110 * 19 18 17 22 22 C 1.34496 * 109.00811 * 359.77478 * 18 17 12 23 23 C 1.53779 * 113.61419 * 247.49767 * 3 2 1 24 24 H 1.09002 * 109.47167 * 60.00295 * 1 2 3 25 25 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47346 * 300.00006 * 1 2 3 27 27 H 1.08997 * 113.61646 * 334.57186 * 5 3 2 28 28 H 1.08998 * 113.69354 * 203.67494 * 5 3 2 29 29 H 0.97002 * 120.00490 * 335.00104 * 8 6 5 30 30 H 1.09000 * 109.70553 * 284.02412 * 13 12 11 31 31 H 1.09003 * 109.70435 * 44.59848 * 13 12 11 32 32 H 1.08993 * 109.54308 * 168.32563 * 14 13 12 33 33 H 1.09003 * 109.54161 * 288.50024 * 14 13 12 34 34 H 1.09002 * 109.46255 * 50.44414 * 15 14 13 35 35 H 1.08993 * 109.46748 * 170.41425 * 15 14 13 36 36 H 1.08998 * 109.56737 * 170.83358 * 16 15 14 37 37 H 1.09001 * 109.56089 * 291.06333 * 16 15 14 38 38 H 1.08997 * 109.46875 * 90.00026 * 19 18 17 39 39 H 0.96710 * 113.99821 * 299.99581 * 20 19 18 40 40 H 1.48496 * 110.00128 * 179.97438 * 21 19 18 41 41 H 1.48500 * 110.00315 * 301.32343 * 21 19 18 42 42 H 1.08000 * 126.81569 * 180.22258 * 22 18 17 43 43 H 1.09002 * 113.61557 * 156.33529 * 23 3 2 44 44 H 1.09004 * 113.61501 * 25.42949 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0789 0.3238 5 6 3.3755 1.3719 0.7046 6 6 4.0061 1.0330 -0.6565 7 1 4.1084 -0.0372 -0.8359 8 7 5.2363 1.7781 -0.9350 9 6 6.1522 1.2732 -1.7851 10 8 5.9575 0.1986 -2.3207 11 6 7.3891 2.0219 -2.0648 12 6 8.4040 1.6480 -2.8948 13 6 8.4838 0.3805 -3.7117 14 6 9.5794 0.5593 -4.7702 15 6 10.8421 1.1039 -4.0956 16 6 10.6022 2.5496 -3.6517 17 7 9.3546 2.6092 -2.8760 18 6 8.9775 3.6191 -2.0398 19 6 9.7756 4.8659 -1.7580 20 8 11.1698 4.5764 -1.8782 21 14 9.4113 5.4592 -0.0301 22 6 7.7760 3.3250 -1.5118 23 6 2.7534 1.6489 -1.3017 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.5170 0.5958 1.4567 28 1 3.6322 2.3665 1.0692 29 1 5.3917 2.6350 -0.5077 30 1 8.7327 -0.4596 -3.0633 31 1 7.5266 0.1970 -4.1998 32 1 9.7994 -0.4025 -5.2333 33 1 9.2396 1.2614 -5.5316 34 1 11.0819 0.4920 -3.2260 35 1 11.6725 1.0736 -4.8009 36 1 11.4339 2.8838 -3.0315 37 1 10.5197 3.1918 -4.5286 38 1 9.5026 5.6415 -2.4736 39 1 11.4835 3.8932 -1.2698 40 1 10.1927 6.6881 0.2604 41 1 7.9592 5.7334 0.1173 42 1 7.2097 3.9270 -0.8167 43 1 2.8389 2.7197 -1.4863 44 1 2.3927 1.0963 -2.1693 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_16915396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:12:15 Heat of formation + Delta-G solvation = -39.078261 kcal Electronic energy + Delta-G solvation = -25899.296735 eV Core-core repulsion = 22205.764021 eV Total energy + Delta-G solvation = -3693.532713 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.80474 -41.05031 -39.59938 -37.96192 -37.09267 -36.87752 -34.07881 -33.39427 -31.17269 -29.55277 -27.66206 -26.76804 -26.63691 -25.49027 -24.66418 -23.45557 -21.78351 -21.21001 -20.83614 -19.53617 -18.82299 -17.98842 -17.42011 -16.91533 -16.72421 -16.59123 -16.23079 -16.04147 -15.88760 -15.64361 -15.40057 -15.18990 -15.08820 -14.76045 -14.67979 -14.48622 -14.25655 -13.89060 -13.48126 -13.33433 -13.23991 -13.10494 -12.75553 -12.43273 -12.31457 -12.05724 -12.00001 -11.95802 -11.79253 -11.78151 -11.40487 -10.88794 -10.65657 -10.52562 -10.05984 -9.57193 -9.06586 -4.90690 0.69999 1.06474 1.38577 1.68330 1.81964 2.04327 2.42891 2.50597 2.70058 3.32019 3.46542 3.49797 3.58594 3.61062 3.69743 3.80081 3.82289 3.85359 4.08034 4.13502 4.32278 4.34151 4.36565 4.40325 4.43518 4.51378 4.54390 4.62286 4.68926 4.75134 4.79528 4.80954 4.82064 4.84572 4.95424 4.97421 5.01947 5.02701 5.06690 5.18449 5.21773 5.57642 5.70026 6.02429 6.21447 6.26433 6.59822 6.66709 7.34881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.063 3.937 4 H 0.103 0.897 5 C -0.134 4.134 6 C 0.124 3.876 7 H 0.085 0.915 8 N -0.705 5.705 9 C 0.587 3.413 10 O -0.592 6.592 11 C -0.257 4.257 12 C 0.106 3.894 13 C -0.054 4.054 14 C -0.126 4.126 15 C -0.133 4.133 16 C 0.095 3.905 17 N -0.424 5.424 18 C -0.009 4.009 19 C -0.047 4.047 20 O -0.551 6.551 21 Si 0.798 3.202 22 C -0.171 4.171 23 C -0.169 4.169 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.413 0.587 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.395 0.605 40 H -0.293 1.293 41 H -0.272 1.272 42 H 0.165 0.835 43 H 0.109 0.891 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 3.447 3.207 5.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.005 3.995 4 H 0.121 0.879 5 C -0.172 4.172 6 C 0.019 3.981 7 H 0.103 0.897 8 N -0.356 5.356 9 C 0.377 3.623 10 O -0.474 6.474 11 C -0.266 4.266 12 C -0.013 4.013 13 C -0.092 4.092 14 C -0.163 4.163 15 C -0.170 4.170 16 C -0.025 4.025 17 N -0.100 5.100 18 C -0.118 4.118 19 C -0.156 4.156 20 O -0.359 6.359 21 Si 0.700 3.300 22 C -0.195 4.195 23 C -0.208 4.208 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.144 0.856 29 H 0.250 0.750 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.141 0.859 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.245 0.755 40 H -0.221 1.221 41 H -0.198 1.198 42 H 0.183 0.817 43 H 0.127 0.873 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.280 3.659 2.692 5.083 hybrid contribution -0.568 0.369 -0.813 1.058 sum 1.712 4.027 1.879 4.762 Atomic orbital electron populations 1.22978 0.79379 1.03702 1.00995 1.87872 1.21500 1.27602 1.94657 1.22985 0.94913 0.85512 0.96107 0.87913 1.23613 0.93253 1.04496 0.95802 1.22395 0.82245 0.96554 0.96945 0.89656 1.45653 1.19340 1.24301 1.46275 1.17685 0.82623 0.83982 0.77981 1.90738 1.79663 1.23941 1.53057 1.19953 0.97418 0.99584 1.09674 1.20539 0.89036 0.92852 0.98862 1.20431 1.00524 0.91952 0.96253 1.21705 0.94452 1.02935 0.97225 1.21930 0.98896 0.93937 1.02262 1.22497 0.84468 0.99033 0.96486 1.44051 1.16674 1.15101 1.34144 1.20952 0.98072 0.93833 0.98964 1.25025 0.82253 0.94193 1.14142 1.86459 1.21353 1.63010 1.65082 0.93101 0.78402 0.81516 0.76949 1.21928 0.96479 0.95928 1.05124 1.23998 0.96240 1.02357 0.98194 0.93383 0.89058 0.92424 0.90245 0.85596 0.75003 0.89883 0.90597 0.89261 0.91900 0.90457 0.87409 0.85913 0.90236 0.87139 0.75457 1.22079 1.19793 0.81733 0.87297 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -2.22 10.63 -148.98 -1.58 -3.81 16 3 C 0.06 0.04 4.37 31.12 0.14 0.17 16 4 H 0.10 -0.41 7.87 -2.39 -0.02 -0.43 16 5 C -0.13 0.14 7.66 31.12 0.24 0.38 16 6 C 0.12 0.61 4.17 45.52 0.19 0.80 16 7 H 0.09 1.04 7.46 -2.39 -0.02 1.02 16 8 N -0.71 -2.88 5.35 -443.45 -2.37 -5.25 16 9 C 0.59 6.38 7.81 86.62 0.68 7.06 16 10 O -0.59 -11.02 14.94 -4.13 -0.06 -11.08 16 11 C -0.26 -1.92 6.28 -19.12 -0.12 -2.04 16 12 C 0.11 0.67 6.57 41.69 0.27 0.95 16 13 C -0.05 -0.29 5.32 30.07 0.16 -0.13 16 14 C -0.13 0.09 5.98 30.78 0.18 0.28 16 15 C -0.13 0.60 5.92 30.69 0.18 0.79 16 16 C 0.09 -0.30 6.22 86.32 0.54 0.24 16 17 N -0.42 -0.73 3.11 -493.60 -1.54 -2.26 16 18 C -0.01 0.00 6.14 40.99 0.25 0.25 16 19 C -0.05 0.15 3.00 71.24 0.21 0.37 16 20 O -0.55 2.50 10.28 -148.98 -1.53 0.97 16 21 Si 0.80 -4.23 31.30 68.60 2.15 -2.09 16 22 C -0.17 -0.28 9.09 23.64 0.21 -0.06 16 23 C -0.17 -0.44 7.71 31.12 0.24 -0.20 16 24 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.13 -0.87 8.12 -2.39 -0.02 -0.89 16 29 H 0.41 -0.90 7.85 -92.71 -0.73 -1.62 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.75 7.40 -2.39 -0.02 0.73 16 32 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.06 0.02 8.12 -2.39 -0.02 0.00 16 34 H 0.08 -0.33 8.11 -2.39 -0.02 -0.35 16 35 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 36 H 0.12 -0.80 5.68 -2.39 -0.01 -0.81 16 37 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.11 -0.23 7.96 -2.39 -0.02 -0.25 16 39 H 0.39 -4.56 8.27 -74.05 -0.61 -5.18 16 40 H -0.29 -0.48 7.11 99.48 0.71 0.23 16 41 H -0.27 0.56 6.77 99.48 0.67 1.23 16 42 H 0.17 -0.52 6.31 -2.91 -0.02 -0.54 16 43 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 Total: 0.00 -20.75 351.15 -0.65 -21.40 By element: Atomic # 1 Polarization: -7.62 SS G_CDS: -0.32 Total: -7.94 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 4.61 Total: 10.07 kcal Atomic # 7 Polarization: -3.61 SS G_CDS: -3.91 Total: -7.52 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -3.18 Total: -13.92 kcal Atomic # 14 Polarization: -4.23 SS G_CDS: 2.15 Total: -2.09 kcal Total: -20.75 -0.65 -21.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_16915396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.683 kcal (2) G-P(sol) polarization free energy of solvation -20.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds