Wall clock time and date at job start Sat Mar 6 2021 21:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99543 * 2 1 4 4 H 1.09000 * 112.85162 * 18.80705 * 3 2 1 5 5 C 1.53782 * 113.61145 * 150.00074 * 3 2 1 6 6 C 1.53780 * 87.07905 * 89.11580 * 5 3 2 7 7 H 1.08997 * 113.61321 * 270.79463 * 6 5 3 8 8 N 1.46499 * 113.60973 * 139.97900 * 6 5 3 9 9 C 1.34786 * 119.99740 * 154.99837 * 8 6 5 10 10 O 1.21610 * 119.99973 * 359.97438 * 9 8 6 11 11 C 1.47376 * 119.99708 * 180.02562 * 9 8 6 12 12 C 1.36414 * 127.18734 * 180.02562 * 11 9 8 13 13 C 1.50703 * 125.80503 * 359.97438 * 12 11 9 14 14 O 1.42897 * 109.47158 * 89.71879 * 13 12 11 15 15 C 1.35900 * 117.00207 * 180.02562 * 14 13 12 16 16 C 1.38728 * 120.05417 * 180.02562 * 15 14 13 17 17 C 1.38154 * 119.93919 * 179.97438 * 16 15 14 18 18 C 1.38260 * 120.05718 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.94431 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47278 * 300.00307 * 19 18 17 21 21 Si 1.86300 * 109.47355 * 180.02562 * 19 18 17 22 22 C 1.38268 * 120.11273 * 0.27901 * 18 17 16 23 23 C 1.38148 * 120.05255 * 359.44588 * 22 18 17 24 24 O 1.33651 * 108.39877 * 179.73348 * 12 11 9 25 25 C 1.34223 * 110.90451 * 0.26264 * 24 12 11 26 26 C 1.34170 * 109.12643 * 0.02562 * 25 24 12 27 27 C 1.53772 * 87.08317 * 25.43280 * 6 5 3 28 28 H 1.09006 * 109.47049 * 299.99737 * 1 2 3 29 29 H 1.09001 * 109.47612 * 59.99958 * 1 2 3 30 30 H 1.09000 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.08998 * 113.61457 * 334.56547 * 5 3 2 32 32 H 1.09004 * 113.68838 * 203.67976 * 5 3 2 33 33 H 0.96995 * 120.00622 * 335.00341 * 8 6 5 34 34 H 1.08998 * 109.46945 * 329.71843 * 13 12 11 35 35 H 1.09003 * 109.47249 * 209.71960 * 13 12 11 36 36 H 1.07991 * 120.03247 * 359.97438 * 16 15 14 37 37 H 1.08003 * 119.97033 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.47214 * 60.00282 * 19 18 17 39 39 H 0.96700 * 114.00022 * 180.02562 * 20 19 18 40 40 H 1.48506 * 110.00048 * 298.68478 * 21 19 18 41 41 H 1.48502 * 109.99996 * 59.99803 * 21 19 18 42 42 H 1.07999 * 119.97015 * 179.72707 * 22 18 17 43 43 H 1.08003 * 120.02568 * 180.27470 * 23 22 18 44 44 H 1.08001 * 125.43677 * 180.02562 * 25 24 12 45 45 H 1.08003 * 127.02576 * 180.02562 * 26 25 24 46 46 H 1.09001 * 113.61771 * 89.11305 * 27 6 5 47 47 H 1.08995 * 113.61730 * 220.01892 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3137 2.0790 0.3238 5 6 3.3755 1.3720 0.7045 6 6 4.0060 1.0332 -0.6565 7 1 4.1098 -0.0370 -0.8354 8 7 5.2362 1.7785 -0.9351 9 6 6.1521 1.2735 -1.7852 10 8 5.9576 0.1991 -2.3207 11 6 7.3899 2.0229 -2.0650 12 6 8.4080 1.6533 -2.8943 13 6 8.4698 0.3827 -3.7023 14 8 7.8734 0.6026 -4.9821 15 6 7.8467 -0.4513 -5.8398 16 6 7.2831 -0.3080 -7.0993 17 6 7.2578 -1.3808 -7.9694 18 6 7.7939 -2.5962 -7.5861 19 6 7.7655 -3.7645 -8.5374 20 8 6.4109 -4.0739 -8.8715 21 14 8.5582 -5.2437 -7.7285 22 6 8.3516 -2.7430 -6.3294 23 6 8.3845 -1.6717 -5.4577 24 8 9.3390 2.6119 -2.8725 25 6 8.9796 3.6100 -2.0502 26 6 7.7872 3.3234 -1.5059 27 6 2.7534 1.6490 -1.3017 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.5170 0.5959 1.4566 32 1 3.6321 2.3667 1.0693 33 1 5.3916 2.6352 -0.5077 34 1 7.9290 -0.4066 -3.1802 35 1 9.5103 0.0852 -3.8327 36 1 6.8645 0.6412 -7.3993 37 1 6.8195 -1.2697 -8.9502 38 1 8.3138 -3.5084 -9.4439 39 1 6.3164 -4.8181 -9.4817 40 1 9.9766 -4.9460 -7.4045 41 1 7.8194 -5.6029 -6.4914 42 1 8.7658 -3.6946 -6.0307 43 1 8.8241 -1.7856 -4.4778 44 1 9.5579 4.5015 -1.8574 45 1 7.2304 3.9271 -0.8046 46 1 2.8388 2.7199 -1.4862 47 1 2.3926 1.0965 -2.1692 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_4549634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:12:40 Heat of formation + Delta-G solvation = -64.494110 kcal Electronic energy + Delta-G solvation = -31498.115975 eV Core-core repulsion = 27002.401872 eV Total energy + Delta-G solvation = -4495.714103 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.150 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.78617 -41.44169 -41.25599 -39.86118 -39.24494 -37.29848 -37.20001 -34.68862 -33.69988 -32.95903 -32.15847 -31.57798 -28.24222 -27.64266 -26.81216 -26.30374 -25.86994 -24.19606 -23.88116 -22.42537 -22.13764 -21.44804 -20.59235 -19.67114 -19.18479 -18.38046 -18.13113 -17.74980 -17.31461 -17.13231 -16.97216 -16.83772 -16.79700 -16.33526 -16.20791 -15.88924 -15.76823 -15.65158 -15.43312 -14.90230 -14.69536 -14.61981 -14.30915 -14.10797 -13.94164 -13.88209 -13.59253 -13.48908 -13.40573 -13.30308 -13.12539 -12.57335 -12.45820 -12.25320 -12.13041 -12.06881 -11.90516 -11.50061 -11.21052 -11.03427 -10.58180 -10.32328 -10.23185 -10.19943 -9.88911 -9.37333 -4.97431 -0.12700 0.06680 0.12536 0.98323 1.29417 1.42762 1.61577 1.96156 1.96349 2.07799 2.35721 2.45925 2.65001 3.24696 3.37985 3.40091 3.51804 3.53098 3.53712 3.64171 3.67596 3.76252 3.80501 3.89535 3.98655 4.02459 4.10183 4.25068 4.27855 4.38098 4.39089 4.45416 4.50947 4.54134 4.55902 4.62618 4.74104 4.75268 4.76275 4.80143 4.89120 4.95287 4.97769 4.98519 5.04796 5.22259 5.30583 5.39438 5.51750 5.82321 6.08868 6.21647 6.39517 6.92548 7.05271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.063 3.937 4 H 0.106 0.894 5 C -0.132 4.132 6 C 0.121 3.879 7 H 0.084 0.916 8 N -0.694 5.694 9 C 0.581 3.419 10 O -0.578 6.578 11 C -0.222 4.222 12 C 0.038 3.962 13 C 0.134 3.866 14 O -0.318 6.318 15 C 0.125 3.875 16 C -0.157 4.157 17 C -0.052 4.052 18 C -0.128 4.128 19 C -0.072 4.072 20 O -0.565 6.565 21 Si 0.774 3.226 22 C -0.099 4.099 23 C -0.207 4.207 24 O -0.177 6.177 25 C -0.010 4.010 26 C -0.194 4.194 27 C -0.168 4.168 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.418 0.582 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.099 0.901 39 H 0.404 0.596 40 H -0.286 1.286 41 H -0.303 1.303 42 H 0.122 0.878 43 H 0.142 0.858 44 H 0.256 0.744 45 H 0.196 0.804 46 H 0.114 0.886 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 4.384 1.618 4.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.004 3.996 4 H 0.124 0.876 5 C -0.170 4.170 6 C 0.016 3.984 7 H 0.102 0.898 8 N -0.345 5.345 9 C 0.369 3.631 10 O -0.459 6.459 11 C -0.227 4.227 12 C -0.015 4.015 13 C 0.060 3.940 14 O -0.232 6.232 15 C 0.080 3.920 16 C -0.175 4.175 17 C -0.070 4.070 18 C -0.128 4.128 19 C -0.182 4.182 20 O -0.375 6.375 21 Si 0.681 3.319 22 C -0.117 4.117 23 C -0.226 4.226 24 O -0.072 6.072 25 C -0.075 4.075 26 C -0.213 4.213 27 C -0.207 4.207 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.149 0.851 33 H 0.256 0.744 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.116 0.884 39 H 0.255 0.745 40 H -0.214 1.214 41 H -0.231 1.231 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.271 0.729 45 H 0.214 0.786 46 H 0.132 0.868 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.523 3.837 2.169 4.439 hybrid contribution -0.230 0.824 0.518 1.000 sum 0.293 4.662 2.687 5.389 Atomic orbital electron populations 1.22984 0.79288 1.03701 1.01086 1.87875 1.21604 1.27692 1.94654 1.22998 0.94985 0.85592 0.95976 0.87578 1.23625 0.93149 1.04731 0.95471 1.22485 0.82011 0.96512 0.97410 0.89760 1.45639 1.19082 1.24384 1.45422 1.17573 0.82702 0.84196 0.78612 1.90788 1.79000 1.23711 1.52414 1.21397 0.96423 0.99325 1.05540 1.21930 0.88894 0.91515 0.99166 1.21105 1.00174 0.91194 0.81541 1.86046 1.76791 1.35383 1.24995 1.19137 0.96087 0.86424 0.90392 1.20751 1.03683 1.01377 0.91691 1.21049 0.95449 0.90506 1.00001 1.19683 1.02226 0.96050 0.94881 1.24739 0.89329 1.02219 1.01941 1.86449 1.23881 1.57090 1.70066 0.94560 0.75083 0.81470 0.80816 1.20827 0.99415 0.97917 0.93528 1.21311 1.06425 0.92889 1.01977 1.83793 1.42844 1.26101 1.54484 1.24979 0.97763 0.92481 0.92287 1.23271 0.98036 0.94857 1.05095 1.24006 0.95908 1.02589 0.98238 0.92265 0.93331 0.89159 0.90272 0.85129 0.74372 0.88088 0.88313 0.83809 0.82869 0.88352 0.74511 1.21384 1.23099 0.86030 0.83983 0.72865 0.78644 0.86811 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -2.14 10.63 -148.98 -1.58 -3.72 16 3 C 0.06 -0.02 4.38 31.12 0.14 0.12 16 4 H 0.11 -0.55 7.87 -2.39 -0.02 -0.57 16 5 C -0.13 0.32 7.66 31.12 0.24 0.56 16 6 C 0.12 0.46 4.17 45.51 0.19 0.65 16 7 H 0.08 0.98 7.46 -2.39 -0.02 0.96 16 8 N -0.69 -1.37 5.35 -443.35 -2.37 -3.75 16 9 C 0.58 5.58 7.81 86.65 0.68 6.26 16 10 O -0.58 -10.58 14.45 -4.06 -0.06 -10.64 16 11 C -0.22 -1.35 6.31 -18.99 -0.12 -1.47 16 12 C 0.04 0.30 7.00 25.26 0.18 0.48 16 13 C 0.13 1.22 4.73 71.24 0.34 1.56 16 14 O -0.32 -4.22 10.12 -92.43 -0.94 -5.16 16 15 C 0.12 1.56 6.69 22.50 0.15 1.71 16 16 C -0.16 -1.60 9.99 22.37 0.22 -1.38 16 17 C -0.05 -0.43 9.60 22.26 0.21 -0.22 16 18 C -0.13 -1.13 5.42 -19.85 -0.11 -1.24 16 19 C -0.07 -0.16 2.81 71.23 0.20 0.04 16 20 O -0.56 -1.28 12.74 -148.98 -1.90 -3.17 16 21 Si 0.77 0.54 29.78 68.60 2.04 2.59 16 22 C -0.10 -1.05 8.66 22.26 0.19 -0.86 16 23 C -0.21 -2.27 9.04 22.37 0.20 -2.07 16 24 O -0.18 -0.76 10.52 4.41 0.05 -0.72 16 25 C -0.01 0.03 12.03 66.89 0.80 0.84 16 26 C -0.19 0.54 10.60 23.65 0.25 0.79 16 27 C -0.17 -0.28 7.71 31.12 0.24 -0.04 16 28 H 0.06 -0.21 8.14 -2.38 -0.02 -0.23 16 29 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.13 -1.18 8.12 -2.39 -0.02 -1.20 16 33 H 0.42 -2.39 7.90 -92.71 -0.73 -3.12 16 34 H 0.10 1.15 6.02 -2.39 -0.01 1.13 16 35 H 0.10 0.43 7.66 -2.39 -0.02 0.41 16 36 H 0.14 1.05 8.06 -2.92 -0.02 1.03 16 37 H 0.15 0.59 8.06 -2.91 -0.02 0.56 16 38 H 0.10 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.40 -3.55 8.74 -74.06 -0.65 -4.20 16 40 H -0.29 -1.61 7.11 99.48 0.71 -0.90 16 41 H -0.30 -2.80 7.11 99.48 0.71 -2.09 16 42 H 0.12 1.09 4.87 -2.91 -0.01 1.08 16 43 H 0.14 1.03 6.30 -2.91 -0.02 1.01 16 44 H 0.26 -3.34 8.06 -2.91 -0.02 -3.36 16 45 H 0.20 -2.11 7.74 -2.91 -0.02 -2.13 16 46 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 Total: 0.00 -29.95 396.96 0.16 -29.78 By element: Atomic # 1 Polarization: -11.84 SS G_CDS: -0.32 Total: -12.16 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.24 Total: 6.94 kcal Atomic # 7 Polarization: -1.37 SS G_CDS: -2.37 Total: -3.75 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -4.43 Total: -23.41 kcal Atomic # 14 Polarization: 0.54 SS G_CDS: 2.04 Total: 2.59 kcal Total: -29.95 0.16 -29.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_4549634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.710 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds