Wall clock time and date at job start Sat Mar 6 2021 21:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99784 * 2 1 4 4 H 1.08999 * 112.90578 * 18.75455 * 3 2 1 5 5 C 1.53782 * 113.61259 * 150.00069 * 3 2 1 6 6 C 1.53785 * 87.08111 * 89.11727 * 5 3 2 7 7 H 1.09003 * 113.61303 * 270.80203 * 6 5 3 8 8 N 1.46497 * 113.61126 * 139.98069 * 6 5 3 9 9 C 1.34780 * 119.99566 * 155.00450 * 8 6 5 10 10 O 1.21280 * 120.00423 * 359.97438 * 9 8 6 11 11 C 1.50701 * 119.99795 * 180.02562 * 9 8 6 12 12 O 1.42903 * 109.46878 * 179.97438 * 11 9 8 13 13 C 1.35904 * 116.99628 * 179.97438 * 12 11 9 14 14 C 1.38710 * 120.05175 * 179.72355 * 13 12 11 15 15 N 1.48002 * 120.03373 * 0.02638 * 14 13 12 16 16 O 1.21793 * 120.00618 * 180.02562 * 15 14 13 17 17 O 1.21803 * 119.99564 * 359.97438 * 15 14 13 18 18 C 1.38171 * 119.94209 * 179.79075 * 14 13 12 19 19 C 1.38245 * 120.05423 * 0.48906 * 18 14 13 20 20 C 1.50700 * 119.94584 * 179.72089 * 19 18 14 21 21 O 1.42906 * 109.47140 * 300.02247 * 20 19 18 22 22 Si 1.86305 * 109.47283 * 180.02562 * 20 19 18 23 23 C 1.38285 * 120.11229 * 359.74310 * 19 18 14 24 24 C 1.38130 * 120.05636 * 0.02562 * 23 19 18 25 25 C 1.53783 * 113.61472 * 247.49952 * 3 2 1 26 26 H 1.09003 * 109.47020 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47210 * 299.99490 * 1 2 3 28 28 H 1.09004 * 109.47230 * 59.99862 * 1 2 3 29 29 H 1.09004 * 113.61426 * 334.57192 * 5 3 2 30 30 H 1.08991 * 113.61599 * 203.66822 * 5 3 2 31 31 H 0.96995 * 120.00423 * 334.99756 * 8 6 5 32 32 H 1.09002 * 109.47060 * 299.99722 * 11 9 8 33 33 H 1.09001 * 109.47380 * 59.99809 * 11 9 8 34 34 H 1.07999 * 119.97360 * 180.22844 * 18 14 13 35 35 H 1.09000 * 109.47313 * 60.02089 * 20 19 18 36 36 H 0.96694 * 113.99511 * 179.97438 * 21 20 19 37 37 H 1.48505 * 109.99705 * 60.00208 * 22 20 19 38 38 H 1.48498 * 109.99820 * 181.31715 * 22 20 19 39 39 H 1.08007 * 119.97136 * 179.97438 * 23 19 18 40 40 H 1.07998 * 120.02612 * 179.97438 * 24 23 19 41 41 H 1.08994 * 113.61317 * 156.34131 * 25 3 2 42 42 H 1.08991 * 113.61491 * 25.43318 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0797 0.3228 5 6 3.3755 1.3719 0.7045 6 6 4.0061 1.0331 -0.6566 7 1 4.1098 -0.0371 -0.8355 8 7 5.2363 1.7783 -0.9351 9 6 6.1521 1.2733 -1.7853 10 8 5.9580 0.2019 -2.3194 11 6 7.4179 2.0396 -2.0714 12 8 8.2220 1.3031 -2.9951 13 6 9.4067 1.8591 -3.3613 14 6 10.2399 1.1960 -4.2502 15 7 9.8394 -0.1179 -4.8015 16 8 10.5716 -0.6999 -5.5816 17 8 8.7779 -0.6175 -4.4742 18 6 11.4420 1.7653 -4.6245 19 6 11.8191 2.9901 -4.1059 20 6 13.1336 3.6059 -4.5109 21 8 14.2025 2.7308 -4.1448 22 14 13.3461 5.2417 -3.6450 23 6 10.9925 3.6509 -3.2159 24 6 9.7876 3.0882 -2.8423 25 6 2.7534 1.6490 -1.3018 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 3.5170 0.5957 1.4566 30 1 3.6311 2.3670 1.0686 31 1 5.3917 2.6351 -0.5077 32 1 7.1663 3.0093 -2.5009 33 1 7.9717 2.1856 -1.1440 34 1 12.0894 1.2512 -5.3194 35 1 13.1449 3.7616 -5.5897 36 1 15.0802 3.0639 -4.3762 37 1 13.3326 5.0428 -2.1734 38 1 14.6240 5.8740 -4.0603 39 1 11.2896 4.6075 -2.8119 40 1 9.1425 3.6046 -2.1468 41 1 2.8389 2.7198 -1.4862 42 1 2.3926 1.0965 -2.1693 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_4549638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:12:48 Heat of formation + Delta-G solvation = -80.164356 kcal Electronic energy + Delta-G solvation = -28943.378325 eV Core-core repulsion = 24474.866507 eV Total energy + Delta-G solvation = -4468.511819 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.30099 -41.80596 -41.14554 -40.06115 -39.21720 -37.63591 -37.52560 -37.12801 -34.32216 -33.49449 -32.34345 -29.98529 -27.82719 -27.62984 -26.74483 -26.58723 -25.27364 -23.94799 -22.72969 -21.78034 -20.90771 -20.45750 -19.78811 -19.12663 -18.72888 -18.60006 -18.38568 -17.98180 -17.57148 -17.33099 -16.89429 -16.47527 -16.23125 -16.09082 -15.92958 -15.66568 -15.48573 -15.14384 -14.67489 -14.36628 -14.16037 -13.91064 -13.74883 -13.48312 -13.34047 -13.17699 -13.09393 -12.72268 -12.70256 -12.41994 -12.35206 -12.28291 -12.13033 -12.01447 -11.90253 -11.43553 -10.99528 -10.82952 -10.61366 -10.52663 -10.12375 -9.76866 -4.92670 -1.31448 -0.23781 0.15473 0.34830 1.22166 1.26747 1.44377 1.63811 1.98415 2.02978 2.35122 2.70990 3.06361 3.22725 3.30682 3.46955 3.54008 3.59047 3.62748 3.70561 3.81287 3.86887 3.95362 4.03422 4.09876 4.23893 4.31488 4.33368 4.50501 4.51896 4.54170 4.62481 4.70018 4.81971 4.83952 4.85866 4.95606 5.00721 5.04368 5.07571 5.18841 5.45430 5.76316 6.27100 6.41755 6.47467 6.53236 7.18022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.058 3.942 4 H 0.106 0.894 5 C -0.131 4.131 6 C 0.121 3.879 7 H 0.077 0.923 8 N -0.695 5.695 9 C 0.505 3.495 10 O -0.570 6.570 11 C 0.025 3.975 12 O -0.293 6.293 13 C 0.193 3.807 14 C -0.106 4.106 15 N 0.035 4.965 16 O -0.200 6.200 17 O -0.177 6.177 18 C -0.005 4.005 19 C -0.112 4.112 20 C -0.095 4.095 21 O -0.562 6.562 22 Si 0.788 3.212 23 C -0.006 4.006 24 C -0.187 4.187 25 C -0.167 4.167 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.425 0.575 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.099 0.901 36 H 0.399 0.601 37 H -0.280 1.280 38 H -0.292 1.292 39 H 0.188 0.812 40 H 0.210 0.790 41 H 0.121 0.879 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 17.267 6.217 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.001 4.001 4 H 0.124 0.876 5 C -0.169 4.169 6 C 0.016 3.984 7 H 0.096 0.904 8 N -0.350 5.350 9 C 0.291 3.709 10 O -0.448 6.448 11 C -0.052 4.052 12 O -0.203 6.203 13 C 0.143 3.857 14 C -0.191 4.191 15 N 0.545 4.455 16 O -0.408 6.408 17 O -0.389 6.389 18 C -0.024 4.024 19 C -0.114 4.114 20 C -0.202 4.202 21 O -0.373 6.373 22 Si 0.690 3.310 23 C -0.023 4.023 24 C -0.205 4.205 25 C -0.206 4.206 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.154 0.846 31 H 0.265 0.735 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.117 0.883 36 H 0.250 0.750 37 H -0.206 1.206 38 H -0.219 1.219 39 H 0.205 0.795 40 H 0.226 0.774 41 H 0.139 0.861 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.383 16.821 6.769 18.184 hybrid contribution 0.899 -1.446 -0.684 1.835 sum -0.484 15.375 6.085 16.542 Atomic orbital electron populations 1.22969 0.79367 1.03605 1.01070 1.87879 1.21542 1.27965 1.94690 1.23058 0.95133 0.85463 0.96430 0.87630 1.23635 0.92993 1.04827 0.95427 1.22415 0.82292 0.96406 0.97285 0.90433 1.45614 1.18860 1.24751 1.45783 1.20650 0.85268 0.85788 0.79174 1.90853 1.78618 1.24164 1.51140 1.23153 0.89915 0.96211 0.95878 1.86478 1.27431 1.46578 1.59799 1.18962 0.84534 0.92054 0.90144 1.20859 1.01278 0.87426 1.09543 1.43882 0.99839 1.03005 0.98791 1.94488 1.51042 1.63968 1.31327 1.94686 1.11062 1.69632 1.63567 1.20834 0.90742 0.94578 0.96218 1.19475 0.97321 0.94433 1.00127 1.25257 0.84825 1.03799 1.06321 1.86546 1.18549 1.47230 1.84999 0.94231 0.85774 0.74048 0.76901 1.21676 0.91239 0.99474 0.89945 1.21803 1.00425 0.93126 1.05189 1.24016 0.95722 1.02887 0.97957 0.89363 0.92301 0.93276 0.90690 0.84606 0.73547 0.83280 0.83878 0.83143 0.88297 0.74967 1.20636 1.21887 0.79533 0.77354 0.86091 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.66 10.63 -148.98 -1.58 -3.25 16 3 C 0.06 -0.15 4.37 31.12 0.14 -0.02 16 4 H 0.11 -0.79 7.87 -2.39 -0.02 -0.81 16 5 C -0.13 0.73 7.66 31.12 0.24 0.96 16 6 C 0.12 0.02 4.17 45.52 0.19 0.21 16 7 H 0.08 0.76 7.46 -2.39 -0.02 0.74 16 8 N -0.70 3.59 5.35 -440.02 -2.36 1.23 16 9 C 0.51 1.39 7.91 87.66 0.69 2.09 16 10 O -0.57 -10.12 16.10 16.01 0.26 -9.86 16 11 C 0.03 -0.16 5.22 71.24 0.37 0.21 16 12 O -0.29 -1.77 7.68 -63.44 -0.49 -2.26 16 13 C 0.19 0.44 6.67 22.51 0.15 0.59 16 14 C -0.11 -0.95 6.87 36.48 0.25 -0.70 16 15 N 0.03 0.65 4.45 -46.24 -0.21 0.44 16 16 O -0.20 -4.02 18.45 18.89 0.35 -3.67 16 17 O -0.18 -4.17 17.24 25.60 0.44 -3.73 16 18 C 0.00 -0.02 9.11 22.26 0.20 0.18 16 19 C -0.11 0.35 5.42 -19.85 -0.11 0.25 16 20 C -0.10 0.58 2.81 71.24 0.20 0.78 16 21 O -0.56 0.81 12.74 -148.98 -1.90 -1.09 16 22 Si 0.79 -7.89 29.78 68.60 2.04 -5.85 16 23 C -0.01 0.06 8.66 22.26 0.19 0.25 16 24 C -0.19 1.73 9.04 22.37 0.20 1.93 16 25 C -0.17 0.32 7.71 31.12 0.24 0.56 16 26 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.14 -1.79 8.12 -2.39 -0.02 -1.81 16 31 H 0.43 -6.53 8.73 -92.71 -0.81 -7.34 16 32 H 0.15 -2.41 7.66 -2.39 -0.02 -2.42 16 33 H 0.14 -2.15 7.66 -2.39 -0.02 -2.17 16 34 H 0.15 0.81 7.61 -2.91 -0.02 0.79 16 35 H 0.10 -0.91 7.96 -2.39 -0.02 -0.93 16 36 H 0.40 -3.66 8.74 -74.06 -0.65 -4.31 16 37 H -0.28 1.39 7.11 99.48 0.71 2.10 16 38 H -0.29 1.11 7.11 99.48 0.71 1.82 16 39 H 0.19 -3.20 4.87 -2.91 -0.01 -3.21 16 40 H 0.21 -4.19 6.30 -2.91 -0.02 -4.21 16 41 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 Total: 0.00 -43.34 364.98 0.42 -42.91 By element: Atomic # 1 Polarization: -23.03 SS G_CDS: -0.33 Total: -23.36 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 4.19 Total: 8.47 kcal Atomic # 7 Polarization: 4.23 SS G_CDS: -2.56 Total: 1.67 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -2.92 Total: -23.85 kcal Atomic # 14 Polarization: -7.89 SS G_CDS: 2.04 Total: -5.85 kcal Total: -43.34 0.42 -42.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_4549638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.250 kcal (2) G-P(sol) polarization free energy of solvation -43.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds