Wall clock time and date at job start Sat Mar 6 2021 21:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00386 * 2 1 4 4 H 1.09004 * 112.84222 * 341.19811 * 3 2 1 5 5 C 1.53783 * 113.69136 * 112.45800 * 3 2 1 6 6 C 1.53783 * 87.07593 * 139.99543 * 5 3 2 7 7 H 1.09003 * 113.68746 * 220.00863 * 6 5 3 8 8 N 1.46499 * 113.61254 * 89.12213 * 6 5 3 9 9 C 1.34777 * 120.00199 * 107.50239 * 8 6 5 10 10 O 1.21553 * 119.99924 * 359.97438 * 9 8 6 11 11 C 1.47850 * 119.99831 * 180.27510 * 9 8 6 12 12 C 1.39556 * 120.14147 * 179.45029 * 11 9 8 13 13 C 1.50704 * 120.07473 * 359.97438 * 12 11 9 14 14 O 1.42902 * 109.46834 * 179.97438 * 13 12 11 15 15 C 1.35900 * 116.99665 * 180.02562 * 14 13 12 16 16 C 1.38713 * 120.05674 * 179.73319 * 15 14 13 17 17 C 1.38160 * 119.94474 * 179.76699 * 16 15 14 18 18 C 1.50702 * 119.97585 * 180.22778 * 17 16 15 19 19 O 1.42900 * 109.46939 * 65.24919 * 18 17 16 20 20 Si 1.86296 * 109.47487 * 185.25367 * 18 17 16 21 21 C 1.38247 * 120.05732 * 0.47821 * 17 16 15 22 22 C 1.38291 * 120.10885 * 359.77112 * 21 17 16 23 23 C 1.38120 * 120.05765 * 0.02562 * 22 21 17 24 24 C 1.37982 * 119.84866 * 179.71670 * 12 11 9 25 25 C 1.38330 * 120.14450 * 0.57809 * 24 12 11 26 26 C 1.38384 * 120.29572 * 359.67504 * 25 24 12 27 27 C 1.37939 * 120.14119 * 0.04338 * 26 25 24 28 28 C 1.53770 * 113.61616 * 210.00044 * 3 2 1 29 29 H 1.08997 * 109.47015 * 299.99979 * 1 2 3 30 30 H 1.09002 * 109.46797 * 60.00316 * 1 2 3 31 31 H 1.08997 * 109.46812 * 179.97438 * 1 2 3 32 32 H 1.08995 * 113.61226 * 25.45080 * 5 3 2 33 33 H 1.08996 * 113.61645 * 254.54421 * 5 3 2 34 34 H 0.97001 * 120.00074 * 287.49342 * 8 6 5 35 35 H 1.08994 * 109.46827 * 300.00486 * 13 12 11 36 36 H 1.08996 * 109.46780 * 60.00262 * 13 12 11 37 37 H 1.08004 * 120.02466 * 359.97438 * 16 15 14 38 38 H 1.09006 * 109.46531 * 305.25414 * 18 17 16 39 39 H 0.96703 * 114.00132 * 180.02562 * 19 18 17 40 40 H 1.48499 * 109.99839 * 299.99822 * 20 18 17 41 41 H 1.48504 * 110.00201 * 61.31668 * 20 18 17 42 42 H 1.08002 * 119.94914 * 179.74697 * 21 17 16 43 43 H 1.07998 * 119.97149 * 179.97438 * 22 21 17 44 44 H 1.07998 * 120.03130 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.92665 * 180.29366 * 24 12 11 46 46 H 1.08009 * 119.85376 * 179.69545 * 25 24 12 47 47 H 1.07998 * 119.92777 * 180.02562 * 26 25 24 48 48 H 1.07994 * 120.06830 * 179.97438 * 27 26 25 49 49 H 1.08997 * 113.61786 * 105.38433 * 28 3 2 50 50 H 1.08995 * 113.61505 * 334.47896 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3138 2.0788 -0.3238 5 6 2.7531 1.6510 1.3014 6 6 3.8221 2.3198 0.4210 7 1 4.8425 2.1436 0.7612 8 7 3.5517 3.7320 0.1406 9 6 4.2913 4.6904 0.7332 10 8 5.1823 4.3829 1.5006 11 6 4.0144 6.1158 0.4548 12 6 4.7709 7.1108 1.0756 13 6 5.8727 6.7353 2.0327 14 8 6.4948 7.9211 2.5317 15 6 7.5164 7.7577 3.4130 16 6 8.1690 8.8657 3.9331 17 6 9.2041 8.6971 4.8326 18 6 9.9103 9.9004 5.4021 19 8 8.9987 10.6510 6.2069 20 14 11.3464 9.3404 6.4483 21 6 9.5961 7.4252 5.2067 22 6 8.9504 6.3189 4.6855 23 6 7.9123 6.4822 3.7893 24 6 4.5112 8.4391 0.8069 25 6 3.4958 8.7855 -0.0663 26 6 2.7385 7.8039 -0.6812 27 6 2.9916 6.4722 -0.4257 28 6 3.3756 1.3718 -0.7045 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1169 0.7771 1.8418 33 1 2.2133 2.3503 1.9398 34 1 2.8405 3.9775 -0.4717 35 1 5.4543 6.1668 2.8632 36 1 6.6137 6.1277 1.5133 37 1 7.8660 9.8594 3.6378 38 1 10.2761 10.5260 4.5878 39 1 9.3859 11.4419 6.6063 40 1 10.8608 8.4865 7.5620 41 1 12.3175 8.5857 5.6159 42 1 10.4082 7.2953 5.9068 43 1 9.2587 5.3263 4.9790 44 1 7.4081 5.6179 3.3829 45 1 5.0989 9.2100 1.2829 46 1 3.2933 9.8269 -0.2695 47 1 1.9475 8.0811 -1.3622 48 1 2.3996 5.7072 -0.9059 49 1 3.3383 1.8456 -1.6853 50 1 3.9095 0.4216 -0.7124 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_4557126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:12:54 Heat of formation + Delta-G solvation = -52.299621 kcal Electronic energy + Delta-G solvation = -32585.006312 eV Core-core repulsion = 28124.739435 eV Total energy + Delta-G solvation = -4460.266877 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.95620 -41.35858 -40.48115 -39.34963 -38.91067 -37.39078 -37.32569 -34.48446 -33.37498 -32.73753 -32.00215 -31.16709 -28.12168 -27.74743 -26.83282 -26.69047 -25.60869 -24.57461 -23.82514 -23.18781 -21.88787 -21.81416 -20.63832 -19.12977 -18.96758 -18.42034 -18.03661 -17.61211 -17.47880 -17.25184 -17.07844 -16.74703 -16.48141 -16.26554 -16.03407 -15.95016 -15.86484 -15.53934 -15.36978 -14.72440 -14.70621 -14.56984 -14.34273 -14.23349 -14.08043 -13.69458 -13.67704 -13.53567 -13.46498 -13.36587 -13.25687 -12.79227 -12.47896 -12.29757 -12.26030 -12.23598 -12.19159 -11.99801 -11.88465 -11.57364 -11.02184 -10.51337 -10.40622 -10.35426 -10.05607 -10.02579 -9.87081 -9.44187 -4.95404 -0.31294 0.02413 0.18392 0.23221 1.26636 1.64493 1.68447 1.87596 1.89009 1.98138 2.46152 2.68771 2.83816 3.34207 3.37620 3.45857 3.47614 3.51831 3.66815 3.74860 3.78225 3.79743 3.83226 3.89929 4.00984 4.07248 4.11857 4.17731 4.25041 4.33658 4.34341 4.37047 4.39902 4.45760 4.52419 4.56445 4.65968 4.69679 4.74819 4.79767 4.81448 4.85916 4.89411 4.89986 4.94947 5.05177 5.13356 5.19337 5.24096 5.30203 5.37984 5.41660 5.53526 5.79248 6.19032 6.24047 6.32639 6.89590 6.99403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.062 3.938 4 H 0.107 0.893 5 C -0.167 4.167 6 C 0.120 3.880 7 H 0.094 0.906 8 N -0.693 5.693 9 C 0.558 3.442 10 O -0.569 6.569 11 C -0.148 4.148 12 C -0.052 4.052 13 C 0.115 3.885 14 O -0.321 6.321 15 C 0.123 3.877 16 C -0.134 4.134 17 C -0.051 4.051 18 C -0.083 4.083 19 O -0.563 6.563 20 Si 0.785 3.215 21 C -0.179 4.179 22 C -0.076 4.076 23 C -0.210 4.210 24 C -0.122 4.122 25 C -0.087 4.087 26 C -0.122 4.122 27 C -0.076 4.076 28 C -0.134 4.134 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.415 0.585 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.405 0.595 40 H -0.296 1.296 41 H -0.288 1.288 42 H 0.123 0.877 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.164 0.836 48 H 0.161 0.839 49 H 0.096 0.904 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 3.623 -4.363 6.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.004 3.996 4 H 0.125 0.875 5 C -0.206 4.206 6 C 0.014 3.986 7 H 0.112 0.888 8 N -0.345 5.345 9 C 0.348 3.652 10 O -0.450 6.450 11 C -0.151 4.151 12 C -0.053 4.053 13 C 0.041 3.959 14 O -0.235 6.235 15 C 0.078 3.922 16 C -0.153 4.153 17 C -0.051 4.051 18 C -0.192 4.192 19 O -0.373 6.373 20 Si 0.691 3.309 21 C -0.196 4.196 22 C -0.094 4.094 23 C -0.229 4.229 24 C -0.140 4.140 25 C -0.105 4.105 26 C -0.139 4.139 27 C -0.094 4.094 28 C -0.172 4.172 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.254 0.746 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.159 0.841 38 H 0.115 0.885 39 H 0.256 0.744 40 H -0.224 1.224 41 H -0.216 1.216 42 H 0.141 0.859 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.152 0.848 46 H 0.171 0.829 47 H 0.181 0.819 48 H 0.178 0.822 49 H 0.115 0.885 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.975 2.251 -3.804 5.328 hybrid contribution -0.782 -0.439 -0.358 0.965 sum -3.757 1.812 -4.163 5.893 Atomic orbital electron populations 1.22960 0.79813 1.03689 1.00841 1.87928 1.21226 1.28140 1.94625 1.23930 0.94264 0.85524 0.95891 0.87492 1.23958 0.97895 1.00892 0.97899 1.21591 0.99689 0.79687 0.97613 0.88753 1.45430 1.36807 1.04882 1.47411 1.18507 0.81071 0.85997 0.79665 1.90747 1.33202 1.83751 1.37271 1.19613 1.00958 0.91309 1.03227 1.19677 0.95244 0.94247 0.96131 1.21548 0.93621 0.84489 0.96278 1.85936 1.45690 1.34654 1.57252 1.19145 0.88443 0.94149 0.90446 1.20374 0.97234 0.97965 0.99715 1.19527 0.95742 0.94208 0.95643 1.24929 1.00002 0.93957 1.00316 1.86453 1.39949 1.43337 1.67609 0.94434 0.75062 0.84163 0.77219 1.21005 1.02512 0.92948 1.03166 1.21140 0.93960 0.99641 0.94645 1.21523 1.01648 0.96523 1.03172 1.21134 0.98873 0.95023 0.98997 1.21787 0.93189 1.01735 0.93814 1.21590 1.00354 0.91969 1.00025 1.21583 0.94688 0.98275 0.94904 1.23558 0.95282 0.99929 0.98386 0.93527 0.92563 0.89146 0.88953 0.91149 0.74605 0.90676 0.90416 0.84122 0.88498 0.74382 1.22437 1.21561 0.85946 0.83422 0.84438 0.84834 0.82872 0.81886 0.82182 0.88529 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.40 -0.88 10.72 -148.98 -1.60 -2.48 16 3 C 0.06 -0.15 4.18 31.12 0.13 -0.02 16 4 H 0.11 -0.75 7.87 -2.38 -0.02 -0.77 16 5 C -0.17 0.00 7.71 31.12 0.24 0.24 16 6 C 0.12 -0.04 4.32 45.52 0.20 0.16 16 7 H 0.09 0.37 7.46 -2.39 -0.02 0.35 16 8 N -0.69 1.32 5.21 -442.90 -2.31 -0.99 16 9 C 0.56 2.62 7.75 86.79 0.67 3.29 16 10 O -0.57 -6.65 13.01 -3.88 -0.05 -6.70 16 11 C -0.15 -0.40 5.87 -20.09 -0.12 -0.51 16 12 C -0.05 -0.32 5.91 -19.61 -0.12 -0.43 16 13 C 0.11 1.08 3.38 71.24 0.24 1.32 16 14 O -0.32 -3.46 8.62 -92.42 -0.80 -4.26 16 15 C 0.12 1.43 6.69 22.51 0.15 1.58 16 16 C -0.13 -1.38 9.63 22.36 0.22 -1.17 16 17 C -0.05 -0.46 5.38 -19.88 -0.11 -0.57 16 18 C -0.08 -0.19 2.79 71.24 0.20 0.01 16 19 O -0.56 -1.27 12.81 -148.98 -1.91 -3.18 16 20 Si 0.79 -0.09 29.85 68.60 2.05 1.96 16 21 C -0.18 -1.72 8.67 22.28 0.19 -1.52 16 22 C -0.08 -0.68 10.04 22.25 0.22 -0.45 16 23 C -0.21 -2.21 9.04 22.37 0.20 -2.01 16 24 C -0.12 -0.41 9.37 22.23 0.21 -0.20 16 25 C -0.09 0.19 10.04 22.33 0.22 0.41 16 26 C -0.12 0.63 10.03 22.23 0.22 0.85 16 27 C -0.08 0.32 9.54 22.53 0.21 0.53 16 28 C -0.13 0.44 7.66 31.12 0.24 0.68 16 29 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.42 -3.53 6.74 -92.71 -0.62 -4.15 16 35 H 0.08 0.86 6.87 -2.39 -0.02 0.84 16 36 H 0.08 0.85 6.85 -2.39 -0.02 0.83 16 37 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 38 H 0.10 -0.21 7.96 -2.38 -0.02 -0.23 16 39 H 0.40 -3.66 8.74 -74.06 -0.65 -4.31 16 40 H -0.30 -2.19 7.05 99.48 0.70 -1.49 16 41 H -0.29 -1.53 7.11 99.48 0.71 -0.82 16 42 H 0.12 0.97 4.86 -2.91 -0.01 0.96 16 43 H 0.15 0.61 8.06 -2.91 -0.02 0.58 16 44 H 0.14 1.33 6.30 -2.91 -0.02 1.32 16 45 H 0.13 0.54 7.00 -2.91 -0.02 0.52 16 46 H 0.15 -1.05 8.06 -2.91 -0.02 -1.08 16 47 H 0.16 -1.82 8.06 -2.91 -0.02 -1.85 16 48 H 0.16 -1.85 6.41 -2.91 -0.02 -1.87 16 49 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 50 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: 0.00 -23.72 409.52 -0.21 -23.93 By element: Atomic # 1 Polarization: -11.37 SS G_CDS: -0.25 Total: -11.62 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 4.66 Total: 3.35 kcal Atomic # 7 Polarization: 1.32 SS G_CDS: -2.31 Total: -0.99 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -4.35 Total: -16.62 kcal Atomic # 14 Polarization: -0.09 SS G_CDS: 2.05 Total: 1.96 kcal Total: -23.72 -0.21 -23.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_4557126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.374 kcal (2) G-P(sol) polarization free energy of solvation -23.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds