Wall clock time and date at job start Sat Mar 6 2021 21:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99969 * 2 1 4 4 H 1.08996 * 112.84992 * 18.80488 * 3 2 1 5 5 C 1.53788 * 113.61453 * 149.99717 * 3 2 1 6 6 C 1.53787 * 87.07866 * 89.20249 * 5 3 2 7 7 H 1.09007 * 113.60991 * 270.79844 * 6 5 3 8 8 N 1.46497 * 113.61173 * 139.98114 * 6 5 3 9 9 C 1.34777 * 119.99525 * 154.99569 * 8 6 5 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 6 12 12 O 1.42899 * 109.47143 * 180.27800 * 11 9 8 13 13 C 1.35920 * 117.00320 * 179.97438 * 12 11 9 14 14 C 1.38785 * 120.06161 * 180.02562 * 13 12 11 15 15 Br 1.89107 * 120.03613 * 0.02562 * 14 13 12 16 16 C 1.38235 * 119.92798 * 180.02562 * 14 13 12 17 17 C 1.38236 * 120.04713 * 359.97438 * 16 14 13 18 18 C 1.50703 * 119.94453 * 180.02562 * 17 16 14 19 19 O 1.42893 * 109.47252 * 64.99598 * 18 17 16 20 20 Si 1.86300 * 109.47551 * 185.00140 * 18 17 16 21 21 C 1.38280 * 120.11873 * 359.97438 * 17 16 14 22 22 C 1.38149 * 120.06990 * 359.76362 * 21 17 16 23 23 C 1.53777 * 87.08211 * 25.43018 * 6 5 3 24 24 H 1.08995 * 109.47334 * 299.99867 * 1 2 3 25 25 H 1.09006 * 109.46944 * 60.00156 * 1 2 3 26 26 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.08997 * 113.61101 * 334.65211 * 5 3 2 28 28 H 1.08998 * 113.68985 * 203.76362 * 5 3 2 29 29 H 0.97000 * 120.00580 * 335.00315 * 8 6 5 30 30 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 31 31 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 32 32 H 1.08011 * 119.97664 * 179.97438 * 16 14 13 33 33 H 1.09007 * 109.46955 * 304.99606 * 18 17 16 34 34 H 0.96702 * 114.00022 * 60.00187 * 19 18 17 35 35 H 1.48496 * 110.00076 * 58.67525 * 20 18 17 36 36 H 1.48493 * 110.00117 * 179.97438 * 20 18 17 37 37 H 1.08004 * 119.96892 * 180.02562 * 21 17 16 38 38 H 1.07998 * 120.02397 * 180.25156 * 22 21 17 39 39 H 1.09004 * 113.61536 * 89.11640 * 23 6 5 40 40 H 1.08994 * 113.61762 * 220.01581 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 0.3238 5 6 3.3756 1.3719 0.7046 6 6 4.0063 1.0353 -0.6570 7 1 4.1107 -0.0347 -0.8372 8 7 5.2360 1.7816 -0.9346 9 6 6.1521 1.2782 -1.7853 10 8 5.9584 0.2077 -2.3214 11 6 7.4142 2.0488 -2.0757 12 8 8.2163 1.3168 -3.0046 13 6 9.3978 1.8770 -3.3753 14 6 10.2265 1.2209 -4.2747 15 35 9.7128 -0.4540 -4.9868 16 6 11.4278 1.7929 -4.6495 17 6 11.8033 3.0175 -4.1295 18 6 13.1133 3.6393 -4.5401 19 8 13.0751 3.9540 -5.9334 20 14 13.3957 5.1976 -3.5589 21 6 10.9787 3.6735 -3.2341 22 6 9.7746 3.1087 -2.8603 23 6 2.7532 1.6510 -1.3013 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.5175 0.5949 1.4557 28 1 3.6316 2.3662 1.0706 29 1 5.3909 2.6379 -0.5061 30 1 7.1579 3.0186 -2.5025 31 1 7.9718 2.1950 -1.1506 32 1 12.0735 1.2828 -5.3491 33 1 13.9247 2.9372 -4.3482 34 1 12.3755 4.5754 -6.1773 35 1 13.4056 4.8885 -2.1065 36 1 14.6846 5.8201 -3.9541 37 1 11.2743 4.6303 -2.8296 38 1 9.1292 3.6236 -2.1641 39 1 2.8379 2.7222 -1.4845 40 1 2.3928 1.0994 -2.1695 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_6201210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:13:12 Heat of formation + Delta-G solvation = -79.362767 kcal Electronic energy + Delta-G solvation = -24704.296447 eV Core-core repulsion = 20727.017821 eV Total energy + Delta-G solvation = -3977.278626 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.045 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72980 -41.10415 -39.98180 -39.01689 -37.28176 -37.07771 -34.31090 -33.58888 -31.92744 -30.55421 -29.68326 -27.62739 -26.74403 -26.40467 -25.24312 -23.85638 -22.41279 -21.73903 -20.89253 -19.59405 -18.55858 -18.11475 -17.96728 -17.50286 -17.10151 -16.92151 -16.49580 -16.24990 -16.06830 -15.83563 -15.64816 -15.55961 -15.02572 -14.71170 -14.67290 -14.42906 -13.95405 -13.82188 -13.67708 -13.47292 -13.34136 -13.13650 -12.44217 -12.34121 -12.19119 -12.12695 -12.01889 -11.90933 -11.84181 -11.43992 -11.24090 -10.97640 -10.53435 -10.42083 -10.12693 -9.97934 -9.32655 -4.97515 -0.05672 0.11682 0.63644 1.34319 1.43439 1.44439 1.67728 2.02910 2.39580 2.53123 2.69952 3.44371 3.48987 3.51629 3.58401 3.66840 3.76070 3.80140 3.84316 4.03150 4.08026 4.10984 4.11950 4.30628 4.33255 4.49873 4.51147 4.53619 4.64266 4.69361 4.81128 4.83273 4.84767 4.94905 5.00060 5.00342 5.03387 5.23516 5.43851 5.49597 6.07025 6.26101 6.47921 6.80056 7.16471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.058 3.942 4 H 0.105 0.895 5 C -0.132 4.132 6 C 0.122 3.878 7 H 0.079 0.921 8 N -0.697 5.697 9 C 0.509 3.491 10 O -0.574 6.574 11 C 0.034 3.966 12 O -0.308 6.308 13 C 0.148 3.852 14 C -0.146 4.146 15 Br -0.057 7.057 16 C -0.036 4.036 17 C -0.153 4.153 18 C -0.077 4.077 19 O -0.558 6.558 20 Si 0.790 3.210 21 C -0.052 4.052 22 C -0.188 4.188 23 C -0.167 4.167 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.424 0.576 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.396 0.604 35 H -0.276 1.276 36 H -0.305 1.305 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.119 0.881 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 11.997 6.078 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.000 4.000 4 H 0.123 0.877 5 C -0.170 4.170 6 C 0.017 3.983 7 H 0.097 0.903 8 N -0.351 5.351 9 C 0.295 3.705 10 O -0.452 6.452 11 C -0.044 4.044 12 O -0.220 6.220 13 C 0.100 3.900 14 C -0.226 4.226 15 Br 0.028 6.972 16 C -0.056 4.056 17 C -0.155 4.155 18 C -0.186 4.186 19 O -0.366 6.366 20 Si 0.695 3.305 21 C -0.070 4.070 22 C -0.207 4.207 23 C -0.206 4.206 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.152 0.848 29 H 0.263 0.737 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.121 0.879 34 H 0.246 0.754 35 H -0.203 1.203 36 H -0.234 1.234 37 H 0.186 0.814 38 H 0.200 0.800 39 H 0.138 0.862 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.241 10.236 5.921 12.261 hybrid contribution 0.139 -0.483 -0.102 0.513 sum -3.102 9.753 5.819 11.773 Atomic orbital electron populations 1.22971 0.79359 1.03622 1.01068 1.87873 1.21537 1.27911 1.94688 1.23046 0.95106 0.85469 0.96417 0.87715 1.23636 0.93054 1.04802 0.95494 1.22413 0.82270 0.96401 0.97234 0.90272 1.45651 1.18926 1.24760 1.45798 1.20676 0.85164 0.85702 0.78946 1.90796 1.78731 1.24313 1.51363 1.22885 0.89879 0.95956 0.95655 1.86256 1.28730 1.46908 1.60119 1.18825 0.85241 0.92540 0.93376 1.21289 0.99392 0.96074 1.05850 1.96762 1.92294 1.23703 1.84433 1.20874 0.92807 0.94764 0.97189 1.20379 0.98766 0.95677 1.00648 1.25299 0.95525 1.08713 0.89039 1.86490 1.58810 1.68818 1.22517 0.93798 0.83307 0.77906 0.75448 1.21267 0.92264 0.99531 0.93895 1.21594 0.99976 0.94254 1.04863 1.24009 0.95730 1.02850 0.97976 0.92342 0.93273 0.89308 0.90641 0.84764 0.73680 0.84578 0.85005 0.84799 0.87938 0.75395 1.20287 1.23352 0.81412 0.80004 0.86232 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -1.47 10.64 -148.98 -1.58 -3.06 16 3 C 0.06 -0.16 4.37 31.12 0.14 -0.03 16 4 H 0.11 -0.78 7.87 -2.39 -0.02 -0.80 16 5 C -0.13 0.73 7.66 31.12 0.24 0.97 16 6 C 0.12 -0.01 4.18 45.52 0.19 0.18 16 7 H 0.08 0.71 7.47 -2.38 -0.02 0.69 16 8 N -0.70 3.36 5.35 -440.03 -2.36 1.01 16 9 C 0.51 1.32 7.91 87.66 0.69 2.02 16 10 O -0.57 -9.24 16.10 16.00 0.26 -8.98 16 11 C 0.03 -0.17 5.22 71.24 0.37 0.20 16 12 O -0.31 -1.59 9.00 -73.61 -0.66 -2.25 16 13 C 0.15 0.36 6.68 22.52 0.15 0.51 16 14 C -0.15 -0.91 6.24 22.40 0.14 -0.77 16 15 Br -0.06 -0.61 33.16 -20.37 -0.68 -1.28 16 16 C -0.04 -0.12 9.42 22.27 0.21 0.09 16 17 C -0.15 0.26 5.35 -19.85 -0.11 0.16 16 18 C -0.08 0.18 2.80 71.24 0.20 0.38 16 19 O -0.56 0.41 12.83 -148.98 -1.91 -1.50 16 20 Si 0.79 -4.61 29.80 68.60 2.04 -2.57 16 21 C -0.05 0.34 8.66 22.26 0.19 0.53 16 22 C -0.19 1.14 9.04 22.36 0.20 1.34 16 23 C -0.17 0.35 7.71 31.12 0.24 0.59 16 24 H 0.06 -0.29 8.14 -2.39 -0.02 -0.30 16 25 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 26 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.13 -1.71 8.12 -2.39 -0.02 -1.73 16 29 H 0.42 -6.06 8.73 -92.71 -0.81 -6.87 16 30 H 0.14 -1.79 7.65 -2.38 -0.02 -1.81 16 31 H 0.13 -1.64 7.68 -2.39 -0.02 -1.66 16 32 H 0.13 0.55 8.06 -2.90 -0.02 0.52 16 33 H 0.10 -0.03 7.96 -2.38 -0.02 -0.05 16 34 H 0.40 -3.66 8.70 -74.06 -0.64 -4.31 16 35 H -0.28 0.65 7.11 99.48 0.71 1.35 16 36 H -0.31 -0.91 7.11 99.48 0.71 -0.20 16 37 H 0.17 -2.22 4.90 -2.91 -0.01 -2.23 16 38 H 0.18 -2.71 6.30 -2.91 -0.02 -2.73 16 39 H 0.12 -0.90 8.14 -2.38 -0.02 -0.92 16 40 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 Total: 0.00 -31.68 359.45 -1.13 -32.81 By element: Atomic # 1 Polarization: -21.19 SS G_CDS: -0.32 Total: -21.51 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 4.09 Total: 7.33 kcal Atomic # 7 Polarization: 3.36 SS G_CDS: -2.36 Total: 1.01 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -3.90 Total: -15.79 kcal Atomic # 14 Polarization: -4.61 SS G_CDS: 2.04 Total: -2.57 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -0.68 Total: -1.28 kcal Total: -31.68 -1.13 -32.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_6201210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.554 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds