Wall clock time and date at job start Sat Mar 6 2021 18:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 114.00164 * 2 1 4 4 H 1.08995 * 112.84671 * 18.81099 * 3 2 1 5 5 C 1.53781 * 113.61285 * 150.00049 * 3 2 1 6 6 C 1.53777 * 87.07800 * 140.06661 * 5 3 2 7 7 H 1.09007 * 113.61559 * 89.11956 * 6 5 3 8 8 C 1.53005 * 113.61350 * 219.93251 * 6 5 3 9 9 N 1.46503 * 109.46784 * 183.47221 * 8 6 5 10 10 C 1.34781 * 119.99751 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99602 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00024 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.46938 * 65.00220 * 12 10 9 14 14 O 1.42897 * 109.46993 * 185.00440 * 12 10 9 15 15 C 1.35906 * 116.99917 * 155.32349 * 14 12 10 16 16 C 1.38728 * 120.05532 * 5.08486 * 15 14 12 17 17 C 1.38147 * 119.94416 * 179.74415 * 16 15 14 18 18 C 1.38270 * 120.05006 * 0.50538 * 17 16 15 19 19 C 1.50702 * 119.93818 * 179.74304 * 18 17 16 20 20 O 1.42893 * 109.47484 * 245.02010 * 19 18 17 21 21 Si 1.86295 * 109.47262 * 5.02773 * 19 18 17 22 22 C 1.38263 * 120.11569 * 359.76982 * 18 17 16 23 23 C 1.38143 * 120.05436 * 359.97438 * 22 18 17 24 24 C 1.53773 * 87.08572 * 334.56696 * 6 5 3 25 25 H 1.09001 * 109.47436 * 59.99108 * 1 2 3 26 26 H 1.08999 * 109.47445 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47151 * 299.99910 * 1 2 3 28 28 H 1.09003 * 113.61455 * 25.51988 * 5 3 2 29 29 H 1.08999 * 113.69045 * 254.63029 * 5 3 2 30 30 H 1.09000 * 109.47084 * 303.47173 * 8 6 5 31 31 H 1.08998 * 109.47053 * 63.47762 * 8 6 5 32 32 H 0.96996 * 120.00390 * 0.02562 * 9 8 6 33 33 H 1.09005 * 109.47061 * 305.00195 * 12 10 9 34 34 H 1.08999 * 109.46974 * 299.99667 * 13 12 10 35 35 H 1.08991 * 109.46878 * 60.00467 * 13 12 10 36 36 H 1.09002 * 109.46981 * 180.02562 * 13 12 10 37 37 H 1.08001 * 120.02899 * 359.97438 * 16 15 14 38 38 H 1.07999 * 119.97423 * 180.23271 * 17 16 15 39 39 H 1.09006 * 109.46581 * 125.02391 * 19 18 17 40 40 H 0.96695 * 114.00295 * 180.02562 * 20 19 18 41 41 H 1.48505 * 109.99914 * 178.67801 * 21 19 18 42 42 H 1.48498 * 109.99916 * 299.99357 * 21 19 18 43 43 H 1.07997 * 119.97155 * 180.02562 * 22 18 17 44 44 H 1.08002 * 120.02858 * 179.97438 * 23 22 18 45 45 H 1.08999 * 113.61693 * 139.97816 * 24 6 5 46 46 H 1.09000 * 113.61473 * 270.88440 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0788 0.3239 5 6 3.3755 1.3719 0.7045 6 6 3.8219 2.3199 -0.4210 7 1 3.6208 3.3707 -0.2123 8 6 5.2544 2.0726 -0.8985 9 7 5.6124 3.0730 -1.9071 10 6 6.8355 3.0517 -2.4729 11 8 7.6395 2.2040 -2.1474 12 6 7.2040 4.0811 -3.5100 13 6 7.2254 5.4688 -2.8660 14 8 8.4969 3.7818 -4.0398 15 6 8.7755 4.2460 -5.2864 16 6 7.8664 5.0627 -5.9429 17 6 8.1542 5.5375 -7.2079 18 6 9.3427 5.1909 -7.8237 19 6 9.6515 5.7057 -9.2060 20 8 9.7079 4.6096 -10.1210 21 14 8.3177 6.8919 -9.7393 22 6 10.2479 4.3725 -7.1738 23 6 9.9670 3.8993 -5.9067 24 6 2.7531 1.6511 -1.3013 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9094 0.4216 0.7124 29 1 3.3395 1.8453 1.6857 30 1 5.9376 2.1488 -0.0526 31 1 5.3252 1.0760 -1.3342 32 1 4.9695 3.7512 -2.1671 33 1 6.4690 4.0653 -4.3148 34 1 6.2391 5.6971 -2.4620 35 1 7.9604 5.4845 -2.0613 36 1 7.4915 6.2134 -3.6162 37 1 6.9360 5.3300 -5.4640 38 1 7.4485 6.1764 -7.7179 39 1 10.6125 6.2202 -9.1958 40 1 9.9035 4.8674 -11.0322 41 1 8.6272 7.4311 -11.0880 42 1 7.0026 6.2026 -9.7574 43 1 11.1756 4.1036 -7.6568 44 1 10.6743 3.2597 -5.3995 45 1 2.2132 2.3504 -1.9397 46 1 3.1168 0.7772 -1.8418 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_10157680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:27:21 Heat of formation + Delta-G solvation = -90.583313 kcal Electronic energy + Delta-G solvation = -26520.440473 eV Core-core repulsion = 22571.418052 eV Total energy + Delta-G solvation = -3949.022421 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.80881 -40.88329 -40.22463 -38.99975 -37.50174 -37.31301 -35.46698 -33.38650 -31.92983 -31.67816 -29.19049 -27.45058 -26.71457 -26.61319 -25.27947 -24.15151 -23.22100 -22.29625 -21.52525 -20.50489 -19.51125 -18.73088 -18.51472 -17.60439 -17.35861 -16.95797 -16.80633 -16.58707 -16.54919 -16.20863 -15.92649 -15.66663 -15.51385 -15.25234 -14.98921 -14.59649 -14.28284 -14.20757 -13.99998 -13.67807 -13.59997 -13.57489 -13.43092 -13.28389 -12.90201 -12.87791 -12.44244 -12.36301 -12.21176 -11.96979 -11.88230 -11.72879 -11.66343 -11.42086 -10.92653 -10.46063 -10.42356 -10.22999 -10.04633 -9.22736 -4.91282 0.25392 0.29507 1.32560 1.39825 1.49139 1.62127 1.96305 2.48053 2.60490 2.88662 3.38077 3.43739 3.51837 3.61335 3.69754 3.79350 3.81947 3.82681 3.84005 3.87063 3.97783 4.11455 4.27635 4.29730 4.35853 4.42825 4.46008 4.54308 4.61295 4.63711 4.67418 4.72271 4.73558 4.81598 4.83218 4.86535 4.95626 5.01415 5.11772 5.13471 5.18694 5.23341 5.24059 5.41153 5.49516 5.68239 6.24911 6.31945 6.44423 6.60667 7.08328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.053 3.947 4 H 0.108 0.892 5 C -0.133 4.133 6 C -0.105 4.105 7 H 0.129 0.871 8 C 0.133 3.867 9 N -0.704 5.704 10 C 0.513 3.487 11 O -0.574 6.574 12 C 0.063 3.937 13 C -0.172 4.172 14 O -0.314 6.314 15 C 0.121 3.879 16 C -0.202 4.202 17 C -0.077 4.077 18 C -0.123 4.123 19 C -0.086 4.086 20 O -0.561 6.561 21 Si 0.770 3.230 22 C -0.060 4.060 23 C -0.167 4.167 24 C -0.150 4.150 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.421 0.579 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.164 0.836 38 H 0.150 0.850 39 H 0.092 0.908 40 H 0.394 0.606 41 H -0.290 1.290 42 H -0.294 1.294 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.089 0.911 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 8.954 0.438 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C -0.004 4.004 4 H 0.125 0.875 5 C -0.171 4.171 6 C -0.123 4.123 7 H 0.147 0.853 8 C 0.010 3.990 9 N -0.358 5.358 10 C 0.298 3.702 11 O -0.453 6.453 12 C 0.004 3.996 13 C -0.229 4.229 14 O -0.227 6.227 15 C 0.076 3.924 16 C -0.220 4.220 17 C -0.095 4.095 18 C -0.124 4.124 19 C -0.194 4.194 20 O -0.371 6.371 21 Si 0.675 3.325 22 C -0.078 4.078 23 C -0.185 4.185 24 C -0.188 4.188 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.259 0.741 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.181 0.819 38 H 0.168 0.832 39 H 0.110 0.890 40 H 0.244 0.756 41 H -0.217 1.217 42 H -0.221 1.221 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.108 0.892 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.443 7.906 0.778 10.229 hybrid contribution 0.264 -0.785 -1.060 1.346 sum -6.179 7.121 -0.283 9.432 Atomic orbital electron populations 1.22927 0.79943 1.03454 1.00846 1.87929 1.21170 1.28811 1.94744 1.23908 0.94229 0.85194 0.97110 0.87463 1.23235 0.95277 0.99870 0.98704 1.22505 0.91614 1.01301 0.96907 0.85311 1.21314 0.95848 0.91245 0.90605 1.45678 1.14173 1.34031 1.41914 1.20614 0.82267 0.84910 0.82377 1.90756 1.51180 1.39782 1.63565 1.22458 0.85501 0.95297 0.96383 1.22379 1.05450 0.92621 1.02433 1.86195 1.33999 1.73756 1.28764 1.19227 0.95052 0.94185 0.83973 1.21464 1.01356 1.02086 0.97073 1.21046 0.95443 0.98308 0.94657 1.19437 0.95926 1.01599 0.95397 1.25044 1.10407 0.95157 0.88816 1.86555 1.94013 1.33821 1.22710 0.94172 0.74461 0.81412 0.82434 1.20941 0.99614 0.94592 0.92680 1.20631 0.97153 1.04545 0.96217 1.23579 0.97285 1.00770 0.97123 0.93127 0.89488 0.92932 0.90396 0.89318 0.91858 0.92961 0.74070 0.85596 0.86964 0.92242 0.89059 0.81875 0.83244 0.89001 0.75609 1.21688 1.22139 0.84619 0.85421 0.89241 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.41 -1.40 10.72 -148.98 -1.60 -3.00 16 3 C 0.05 -0.13 4.31 31.12 0.13 0.00 16 4 H 0.11 -0.70 7.87 -2.39 -0.02 -0.72 16 5 C -0.13 0.40 7.47 31.12 0.23 0.64 16 6 C -0.10 0.67 3.75 -10.27 -0.04 0.64 16 7 H 0.13 -1.48 8.14 -2.38 -0.02 -1.50 16 8 C 0.13 -0.13 5.50 86.38 0.48 0.34 16 9 N -0.70 2.31 5.52 -463.04 -2.55 -0.24 16 10 C 0.51 2.50 7.18 87.66 0.63 3.13 16 11 O -0.57 -9.73 16.51 15.95 0.26 -9.46 16 12 C 0.06 -0.02 2.64 29.85 0.08 0.06 16 13 C -0.17 1.10 9.12 71.98 0.66 1.76 16 14 O -0.31 -2.57 9.34 -73.50 -0.69 -3.26 16 15 C 0.12 0.69 6.60 22.51 0.15 0.84 16 16 C -0.20 0.01 8.24 22.37 0.18 0.19 16 17 C -0.08 -0.01 8.66 22.26 0.19 0.18 16 18 C -0.12 -0.36 5.39 -19.85 -0.11 -0.47 16 19 C -0.09 0.03 2.79 71.24 0.20 0.22 16 20 O -0.56 -1.70 12.81 -148.98 -1.91 -3.61 16 21 Si 0.77 -2.30 29.85 68.60 2.05 -0.25 16 22 C -0.06 -0.30 9.68 22.25 0.22 -0.09 16 23 C -0.17 -1.17 9.99 22.37 0.22 -0.95 16 24 C -0.15 0.65 7.47 31.12 0.23 0.89 16 25 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.08 0.06 8.10 -2.39 -0.02 0.04 16 29 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.05 0.20 7.88 -2.39 -0.02 0.18 16 32 H 0.42 -4.83 8.25 -92.71 -0.77 -5.60 16 33 H 0.13 -0.79 6.31 -2.38 -0.02 -0.81 16 34 H 0.11 -1.48 7.92 -2.39 -0.02 -1.50 16 35 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.09 -0.74 6.91 -2.39 -0.02 -0.75 16 37 H 0.16 -1.17 5.43 -2.91 -0.02 -1.18 16 38 H 0.15 -0.69 4.86 -2.91 -0.01 -0.71 16 39 H 0.09 -0.36 7.96 -2.38 -0.02 -0.38 16 40 H 0.39 -2.00 8.74 -74.06 -0.65 -2.65 16 41 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 42 H -0.29 -0.99 7.05 99.48 0.70 -0.29 16 43 H 0.14 0.41 8.06 -2.91 -0.02 0.39 16 44 H 0.13 0.92 8.06 -2.91 -0.02 0.89 16 45 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 46 H 0.07 0.01 7.92 -2.39 -0.02 -0.01 16 Total: 0.00 -27.44 377.92 -0.13 -27.58 By element: Atomic # 1 Polarization: -15.94 SS G_CDS: -0.38 Total: -16.32 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 4.69 Total: 8.56 kcal Atomic # 7 Polarization: 2.31 SS G_CDS: -2.55 Total: -0.24 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -3.93 Total: -19.33 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: 2.05 Total: -0.25 kcal Total: -27.44 -0.13 -27.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_10157680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.007 kcal (2) G-P(sol) polarization free energy of solvation -27.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds