Wall clock time and date at job start Sat Mar 6 2021 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99879 * 2 1 4 4 H 1.08999 * 112.85092 * 341.19476 * 3 2 1 5 5 C 1.53778 * 113.61197 * 112.50550 * 3 2 1 6 6 C 1.53781 * 87.08481 * 139.97881 * 5 3 2 7 7 H 1.09002 * 113.68902 * 89.11768 * 6 5 3 8 8 C 1.52992 * 113.61802 * 220.01739 * 6 5 3 9 9 N 1.46498 * 109.47162 * 272.49626 * 8 6 5 10 10 C 1.34777 * 120.00408 * 179.97438 * 9 8 6 11 11 O 1.21723 * 119.99556 * 359.97438 * 10 9 8 12 12 C 1.46559 * 120.00230 * 179.97438 * 10 9 8 13 13 C 1.40853 * 126.58007 * 179.97438 * 12 10 9 14 14 C 1.40096 * 132.86422 * 0.33005 * 13 12 10 15 15 C 1.36456 * 119.25172 * 180.17161 * 14 13 12 16 16 C 1.50696 * 120.29197 * 179.78360 * 15 14 13 17 17 O 1.42903 * 109.47131 * 239.71860 * 16 15 14 18 18 Si 1.86305 * 109.47185 * 119.72401 * 16 15 14 19 19 C 1.40162 * 119.40903 * 359.51015 * 15 14 13 20 20 C 1.35188 * 120.31758 * 0.25001 * 19 15 14 21 21 N 1.36238 * 120.70777 * 0.02562 * 20 19 15 22 22 N 1.40017 * 132.01448 * 179.97438 * 21 20 19 23 23 C 1.30732 * 109.60933 * 179.97438 * 22 21 20 24 24 C 1.53782 * 87.07946 * 334.56674 * 6 5 3 25 25 H 1.08992 * 109.47163 * 300.00174 * 1 2 3 26 26 H 1.09002 * 109.46701 * 60.00056 * 1 2 3 27 27 H 1.09005 * 109.46985 * 179.97438 * 1 2 3 28 28 H 1.08995 * 113.61735 * 25.43059 * 5 3 2 29 29 H 1.09002 * 113.61072 * 254.52265 * 5 3 2 30 30 H 1.08996 * 109.47348 * 152.49260 * 8 6 5 31 31 H 1.09000 * 109.47082 * 32.49314 * 8 6 5 32 32 H 0.97000 * 120.00073 * 359.97438 * 9 8 6 33 33 H 1.07996 * 120.37411 * 359.95414 * 14 13 12 34 34 H 1.08999 * 109.47358 * 359.72220 * 16 15 14 35 35 H 0.96700 * 114.00311 * 300.00591 * 17 16 15 36 36 H 1.48499 * 109.99670 * 58.67633 * 18 16 15 37 37 H 1.48497 * 110.00233 * 179.97438 * 18 16 15 38 38 H 1.08000 * 119.83824 * 180.27076 * 19 15 14 39 39 H 1.07996 * 119.64199 * 179.97438 * 20 19 15 40 40 H 1.07998 * 125.63084 * 179.97438 * 23 22 21 41 41 H 1.09000 * 113.61915 * 139.97758 * 24 6 5 42 42 H 1.09004 * 113.61593 * 270.80040 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0789 -0.3238 5 6 2.7535 1.6488 1.3017 6 6 3.8228 2.3181 0.4223 7 1 3.6236 3.3694 0.2143 8 6 5.2543 2.0680 0.9007 9 7 5.6261 3.0886 1.8837 10 6 6.8505 3.0679 2.4465 11 8 7.6473 2.2009 2.1383 12 6 7.2226 4.0893 3.4295 13 6 8.4563 4.1988 4.1002 14 6 9.6359 3.4445 4.0550 15 6 10.6884 3.8046 4.8452 16 6 11.9667 3.0070 4.8188 17 8 12.2342 2.4924 6.1249 18 14 13.3733 4.1055 4.2842 19 6 10.5720 4.9264 5.6775 20 6 9.4257 5.6425 5.7011 21 7 8.3674 5.2876 4.9200 22 7 7.0932 5.8451 4.7585 23 6 6.4161 5.1466 3.8851 24 6 3.3756 1.3719 -0.7045 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1167 0.7740 1.8409 29 1 2.2141 2.3477 1.9411 30 1 5.9352 2.1168 0.0509 31 1 5.3167 1.0814 1.3600 32 1 4.9909 3.7793 2.1295 33 1 9.7102 2.5855 3.4046 34 1 11.8644 2.1798 4.1163 35 1 12.3372 3.1742 6.8028 36 1 13.5027 5.2544 5.2161 37 1 14.6398 3.3308 4.2547 38 1 11.4023 5.2202 6.3025 39 1 9.3477 6.5047 6.3468 40 1 5.4041 5.3483 3.5665 41 1 3.3384 1.8471 -1.6848 42 1 3.9099 0.4218 -0.7147 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_11618758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:27:30 Heat of formation + Delta-G solvation = 20.367571 kcal Electronic energy + Delta-G solvation = -25692.999092 eV Core-core repulsion = 21835.703571 eV Total energy + Delta-G solvation = -3857.295521 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.31748 -40.85687 -40.02060 -39.33428 -37.40687 -37.31781 -35.18845 -34.22406 -32.12190 -30.78876 -28.96434 -27.52778 -27.02074 -26.60656 -25.00469 -23.91052 -23.20870 -22.76350 -21.42865 -20.46845 -19.09637 -18.64609 -18.00290 -17.83926 -17.28764 -17.02417 -16.82797 -16.57669 -16.39883 -16.23232 -15.89389 -15.82865 -15.47101 -15.31057 -14.77767 -14.58885 -14.26085 -14.10372 -13.82302 -13.53336 -13.47761 -13.39393 -13.24130 -12.84067 -12.47989 -12.40536 -12.15208 -11.92490 -11.88629 -11.66483 -11.60176 -11.37072 -10.94965 -10.89029 -10.39603 -10.32641 -10.08450 -8.79727 -4.88945 -0.56819 -0.14403 1.01967 1.03131 1.21251 1.59899 1.89057 2.08140 2.24107 2.50187 2.91568 3.08220 3.23072 3.36598 3.52451 3.54994 3.64106 3.70774 3.85902 3.86498 3.87531 3.99058 4.16177 4.19969 4.35330 4.35735 4.42486 4.49252 4.56006 4.57492 4.71632 4.74509 4.81298 4.85589 4.86552 4.90685 5.05658 5.10244 5.14867 5.18862 5.27859 5.34677 5.53441 5.64792 6.28247 6.34096 6.46198 6.62668 7.31396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.054 3.946 4 H 0.106 0.894 5 C -0.150 4.150 6 C -0.106 4.106 7 H 0.125 0.875 8 C 0.138 3.862 9 N -0.712 5.712 10 C 0.596 3.404 11 O -0.593 6.593 12 C -0.340 4.340 13 C 0.152 3.848 14 C -0.116 4.116 15 C -0.051 4.051 16 C -0.086 4.086 17 O -0.542 6.542 18 Si 0.770 3.230 19 C -0.157 4.157 20 C 0.118 3.882 21 N -0.274 5.274 22 N -0.340 5.340 23 C 0.132 3.868 24 C -0.131 4.131 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.414 0.586 33 H 0.150 0.850 34 H 0.122 0.878 35 H 0.390 0.610 36 H -0.253 1.253 37 H -0.294 1.294 38 H 0.191 0.809 39 H 0.206 0.794 40 H 0.235 0.765 41 H 0.088 0.912 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 6.402 -0.253 6.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.004 4.004 4 H 0.124 0.876 5 C -0.187 4.187 6 C -0.125 4.125 7 H 0.143 0.857 8 C 0.014 3.986 9 N -0.364 5.364 10 C 0.385 3.615 11 O -0.476 6.476 12 C -0.355 4.355 13 C 0.030 3.970 14 C -0.136 4.136 15 C -0.057 4.057 16 C -0.193 4.193 17 O -0.351 6.351 18 Si 0.670 3.330 19 C -0.178 4.178 20 C -0.008 4.008 21 N -0.038 5.038 22 N -0.160 5.160 23 C -0.049 4.049 24 C -0.169 4.169 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.251 0.749 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.241 0.759 36 H -0.177 1.177 37 H -0.221 1.221 38 H 0.208 0.792 39 H 0.223 0.777 40 H 0.251 0.749 41 H 0.106 0.894 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.924 6.485 0.207 6.554 hybrid contribution -0.744 -0.710 0.695 1.242 sum -1.669 5.775 0.902 6.078 Atomic orbital electron populations 1.22927 0.79997 1.03454 1.00798 1.87928 1.21119 1.28776 1.94744 1.23907 0.94247 0.85154 0.97093 0.87582 1.23576 0.97325 1.00732 0.97111 1.22502 0.91981 1.01088 0.96932 0.85739 1.21240 0.95400 0.90839 0.91087 1.45537 1.14641 1.32408 1.43797 1.17050 0.81817 0.82991 0.79607 1.90760 1.52033 1.39815 1.64967 1.19698 0.95950 1.06621 1.13224 1.19552 0.95986 0.89167 0.92262 1.20656 0.89751 1.00931 1.02281 1.20570 0.95965 0.95040 0.94078 1.25314 1.00124 1.05109 0.88741 1.86682 1.93020 1.37606 1.17747 0.93418 0.73153 0.76833 0.89631 1.21097 0.98631 0.95549 1.02507 1.22191 0.83492 1.01326 0.93787 1.46301 1.11519 1.18779 1.27176 1.77562 0.88982 1.23621 1.25831 1.24610 1.00452 0.89428 0.90381 1.23225 0.95152 0.99913 0.98588 0.93223 0.92950 0.89425 0.90773 0.89566 0.91936 0.92975 0.74931 0.83198 0.86000 0.75937 1.17704 1.22078 0.79229 0.77738 0.74865 0.89374 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.41 -1.75 10.71 -148.98 -1.60 -3.35 16 3 C 0.05 -0.07 4.31 31.12 0.13 0.07 16 4 H 0.11 -0.55 7.87 -2.39 -0.02 -0.56 16 5 C -0.15 0.38 7.46 31.12 0.23 0.61 16 6 C -0.11 0.47 3.75 -10.27 -0.04 0.43 16 7 H 0.12 -1.11 8.14 -2.39 -0.02 -1.13 16 8 C 0.14 0.13 5.51 86.38 0.48 0.60 16 9 N -0.71 -0.28 5.55 -467.20 -2.59 -2.87 16 10 C 0.60 4.83 7.78 86.41 0.67 5.50 16 11 O -0.59 -9.48 15.71 -4.42 -0.07 -9.55 16 12 C -0.34 -2.09 6.17 -19.90 -0.12 -2.21 16 13 C 0.15 1.05 6.76 39.50 0.27 1.31 16 14 C -0.12 -0.57 9.35 22.30 0.21 -0.36 16 15 C -0.05 0.05 4.53 -19.81 -0.09 -0.04 16 16 C -0.09 0.18 2.84 71.23 0.20 0.38 16 17 O -0.54 -0.06 12.88 -148.98 -1.92 -1.98 16 18 Si 0.77 -3.65 31.97 68.60 2.19 -1.46 16 19 C -0.16 0.84 8.38 22.03 0.18 1.03 16 20 C 0.12 -0.35 11.17 83.31 0.93 0.58 16 21 N -0.27 -1.11 3.86 -187.28 -0.72 -1.84 16 22 N -0.34 -1.64 12.57 -56.62 -0.71 -2.35 16 23 C 0.13 0.13 11.44 85.42 0.98 1.11 16 24 C -0.13 0.25 7.47 31.12 0.23 0.48 16 25 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.09 -0.18 8.14 -2.38 -0.02 -0.20 16 28 H 0.07 0.13 7.90 -2.39 -0.02 0.11 16 29 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.05 0.27 7.84 -2.39 -0.02 0.25 16 32 H 0.41 -2.75 7.39 -92.71 -0.69 -3.44 16 33 H 0.15 1.09 7.01 -2.91 -0.02 1.06 16 34 H 0.12 -0.18 7.71 -2.39 -0.02 -0.20 16 35 H 0.39 -3.18 8.08 -74.06 -0.60 -3.78 16 36 H -0.25 1.14 7.05 99.48 0.70 1.84 16 37 H -0.29 -0.94 7.11 99.48 0.71 -0.23 16 38 H 0.19 -2.39 7.26 -2.91 -0.02 -2.41 16 39 H 0.21 -1.95 8.06 -2.91 -0.02 -1.98 16 40 H 0.24 -2.09 7.46 -2.91 -0.02 -2.11 16 41 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.08 0.12 8.10 -2.39 -0.02 0.10 16 Total: 0.00 -26.32 356.85 -0.11 -26.43 By element: Atomic # 1 Polarization: -13.54 SS G_CDS: -0.19 Total: -13.74 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 5.50 Total: 10.69 kcal Atomic # 7 Polarization: -3.03 SS G_CDS: -4.03 Total: -7.06 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -3.58 Total: -14.87 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.19 Total: -1.46 kcal Total: -26.32 -0.11 -26.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_11618758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.799 kcal (2) G-P(sol) polarization free energy of solvation -26.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds