Wall clock time and date at job start Sat Mar 6 2021 18:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 3 2 7 7 H 1.09003 * 113.61186 * 89.11185 * 6 5 3 8 8 C 1.52999 * 113.61451 * 220.01770 * 6 5 3 9 9 N 1.46504 * 109.47047 * 272.49902 * 8 6 5 10 10 C 1.34776 * 120.00093 * 179.97438 * 9 8 6 11 11 O 1.21578 * 119.99603 * 0.02562 * 10 9 8 12 12 C 1.47684 * 120.00270 * 179.97438 * 10 9 8 13 13 C 1.39817 * 120.16962 * 180.02562 * 12 10 9 14 14 F 1.35098 * 120.10846 * 0.02562 * 13 12 10 15 15 C 1.38321 * 119.78180 * 180.02562 * 13 12 10 16 16 C 1.38201 * 120.11975 * 359.97438 * 15 13 12 17 17 C 1.38464 * 120.33459 * 0.02562 * 16 15 13 18 18 C 1.50707 * 119.88803 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47055 * 245.00143 * 18 17 16 20 20 Si 1.86303 * 109.46934 * 5.00016 * 18 17 16 21 21 C 1.37856 * 120.21961 * 359.72205 * 17 16 15 22 22 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 23 23 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 24 24 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 25 25 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 26 26 H 1.09003 * 113.60734 * 254.54335 * 5 3 2 27 27 H 1.08996 * 113.61146 * 25.43833 * 5 3 2 28 28 H 1.09003 * 109.47100 * 32.49589 * 8 6 5 29 29 H 1.08995 * 109.47213 * 152.50009 * 8 6 5 30 30 H 0.97002 * 119.99937 * 359.97438 * 9 8 6 31 31 H 1.08008 * 119.94323 * 179.97438 * 15 13 12 32 32 H 1.07999 * 119.83515 * 180.02562 * 16 15 13 33 33 H 1.08997 * 109.47193 * 124.99948 * 18 17 16 34 34 H 0.96702 * 113.99984 * 59.99492 * 19 18 17 35 35 H 1.48497 * 110.00120 * 58.68241 * 20 18 17 36 36 H 1.48506 * 109.99498 * 180.02562 * 20 18 17 37 37 H 1.08004 * 120.06116 * 180.28046 * 21 17 16 38 38 H 1.09005 * 113.61302 * 334.47944 * 22 3 2 39 39 H 1.08996 * 113.61527 * 105.30108 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3220 2.0752 -0.3490 5 6 2.7213 1.6652 1.3153 6 6 3.8114 2.3246 0.4540 7 1 3.6155 3.3730 0.2291 8 6 5.2310 2.0813 0.9703 9 7 5.5781 3.1142 1.9496 10 6 6.7885 3.1013 2.5424 11 8 7.5924 2.2327 2.2640 12 6 7.1386 4.1427 3.5292 13 6 8.3934 4.1330 4.1458 14 9 9.2910 3.1705 3.8407 15 6 8.7127 5.1120 5.0693 16 6 7.7949 6.0970 5.3812 17 6 6.5508 6.1114 4.7735 18 6 5.5578 7.1905 5.1207 19 8 4.4235 6.6053 5.7633 20 14 6.3552 8.4221 6.2688 21 6 6.2199 5.1454 3.8473 22 6 3.3923 1.3643 -0.6718 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 2.1660 2.3713 1.9327 27 1 3.0715 0.7972 1.8738 28 1 5.2826 1.1005 1.4430 29 1 5.9324 2.1205 0.1369 30 1 4.9368 3.8074 2.1714 31 1 9.6812 5.1068 5.5475 32 1 8.0492 6.8594 6.1026 33 1 5.2383 7.6969 4.2099 34 1 4.6340 6.1367 6.5826 35 1 7.5547 9.0146 5.6244 36 1 5.3859 9.4912 6.6192 37 1 5.2504 5.1616 3.3715 38 1 3.9262 0.4141 -0.6564 39 1 3.3787 1.8262 -1.6589 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_12335834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:27:39 Heat of formation + Delta-G solvation = -100.193115 kcal Electronic energy + Delta-G solvation = -23472.659899 eV Core-core repulsion = 19683.524220 eV Total energy + Delta-G solvation = -3789.135679 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.02703 -41.44583 -40.56006 -39.80500 -37.53646 -37.38796 -35.47890 -32.85052 -32.29029 -29.24822 -27.45888 -26.69981 -26.61047 -25.32657 -23.63519 -22.70021 -21.74253 -20.58459 -19.32126 -18.34182 -18.27997 -17.84318 -17.23285 -17.03228 -16.78650 -16.59375 -16.35627 -16.18897 -15.95425 -15.77136 -15.65395 -15.26304 -14.69483 -14.43966 -14.37500 -14.25201 -13.71870 -13.58360 -13.44969 -13.20830 -12.89343 -12.85015 -12.46588 -12.16626 -12.00513 -11.87546 -11.75350 -11.45006 -11.19258 -10.47455 -10.45015 -10.42556 -10.16003 -9.83710 -4.95700 -0.51122 -0.04025 1.32279 1.58242 1.68432 1.91702 2.03176 2.46475 2.86663 3.04057 3.33287 3.41946 3.49092 3.55431 3.62818 3.67082 3.78749 3.81753 4.00956 4.09052 4.10162 4.26668 4.43224 4.45246 4.53808 4.56855 4.61962 4.69392 4.76078 4.79319 4.80720 4.84491 4.85571 4.94154 4.99129 5.10362 5.13189 5.19771 5.37892 5.58873 6.30183 6.32284 6.79718 7.01102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.055 3.945 4 H 0.106 0.894 5 C -0.150 4.150 6 C -0.108 4.108 7 H 0.124 0.876 8 C 0.133 3.867 9 N -0.706 5.706 10 C 0.550 3.450 11 O -0.575 6.575 12 C -0.189 4.189 13 C 0.132 3.868 14 F -0.137 7.137 15 C -0.152 4.152 16 C -0.049 4.049 17 C -0.134 4.134 18 C -0.066 4.066 19 O -0.551 6.551 20 Si 0.769 3.231 21 C -0.025 4.025 22 C -0.130 4.130 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.415 0.585 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.119 0.881 34 H 0.397 0.603 35 H -0.282 1.282 36 H -0.302 1.302 37 H 0.158 0.842 38 H 0.080 0.920 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 5.710 3.410 8.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.003 4.003 4 H 0.124 0.876 5 C -0.188 4.188 6 C -0.127 4.127 7 H 0.142 0.858 8 C 0.010 3.990 9 N -0.359 5.359 10 C 0.338 3.662 11 O -0.455 6.455 12 C -0.193 4.193 13 C 0.112 3.888 14 F -0.116 7.116 15 C -0.170 4.170 16 C -0.067 4.067 17 C -0.135 4.135 18 C -0.176 4.176 19 O -0.359 6.359 20 Si 0.675 3.325 21 C -0.044 4.044 22 C -0.168 4.168 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.254 0.746 31 H 0.186 0.814 32 H 0.187 0.813 33 H 0.137 0.863 34 H 0.248 0.752 35 H -0.209 1.209 36 H -0.230 1.230 37 H 0.176 0.824 38 H 0.099 0.901 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.993 5.942 2.789 7.683 hybrid contribution -0.229 -0.247 -0.751 0.823 sum -4.222 5.695 2.039 7.376 Atomic orbital electron populations 1.22931 0.79922 1.03510 1.00825 1.87926 1.21180 1.28640 1.94738 1.23878 0.94212 0.85225 0.96983 0.87594 1.23592 0.97233 1.00791 0.97153 1.22510 0.91854 1.01127 0.97166 0.85829 1.21343 0.96007 0.90642 0.91018 1.45749 1.15447 1.31657 1.43013 1.18388 0.82286 0.84475 0.81017 1.90846 1.50632 1.39351 1.64702 1.20044 0.95934 1.00288 1.02995 1.18238 0.86449 0.87714 0.96432 1.91558 1.66389 1.61902 1.91732 1.21404 1.03219 0.94102 0.98281 1.21389 0.91502 0.96660 0.97118 1.20491 0.96218 0.98431 0.98367 1.25111 0.89891 0.99034 1.03563 1.86495 1.31404 1.74611 1.43440 0.93832 0.76356 0.77539 0.84766 1.21200 0.98120 0.90465 0.94584 1.23215 0.95168 0.99779 0.98629 0.93166 0.92968 0.89352 0.89491 0.90568 0.92496 0.91842 0.74612 0.81421 0.81304 0.86332 0.75244 1.20871 1.22992 0.82441 0.90117 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.41 -1.67 10.72 -148.98 -1.60 -3.27 16 3 C 0.05 -0.07 4.30 31.12 0.13 0.06 16 4 H 0.11 -0.54 7.88 -2.39 -0.02 -0.56 16 5 C -0.15 0.40 7.47 31.12 0.23 0.63 16 6 C -0.11 0.46 3.75 -10.27 -0.04 0.42 16 7 H 0.12 -1.05 8.14 -2.39 -0.02 -1.07 16 8 C 0.13 0.17 5.51 86.38 0.48 0.65 16 9 N -0.71 -0.39 5.51 -466.12 -2.57 -2.96 16 10 C 0.55 4.55 7.77 86.74 0.67 5.23 16 11 O -0.57 -10.49 15.34 -3.96 -0.06 -10.55 16 12 C -0.19 -0.68 5.88 -20.06 -0.12 -0.80 16 13 C 0.13 0.71 7.29 22.67 0.17 0.88 16 14 F -0.14 -1.75 15.55 44.97 0.70 -1.05 16 15 C -0.15 0.37 10.01 22.28 0.22 0.60 16 16 C -0.05 0.34 8.66 22.31 0.19 0.53 16 17 C -0.13 0.80 5.34 -19.90 -0.11 0.70 16 18 C -0.07 0.49 2.80 71.24 0.20 0.69 16 19 O -0.55 3.65 12.83 -148.98 -1.91 1.74 16 20 Si 0.77 -5.91 29.79 68.60 2.04 -3.86 16 21 C -0.03 0.09 9.17 22.52 0.21 0.30 16 22 C -0.13 0.23 7.47 31.12 0.23 0.46 16 23 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.05 -0.19 8.14 -2.39 -0.02 -0.20 16 25 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.09 -0.49 8.14 -2.39 -0.02 -0.50 16 27 H 0.08 0.10 7.90 -2.39 -0.02 0.08 16 28 H 0.06 0.29 7.84 -2.39 -0.02 0.27 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.42 -2.60 6.51 -92.71 -0.60 -3.20 16 31 H 0.17 -1.12 8.06 -2.91 -0.02 -1.14 16 32 H 0.17 -2.16 4.88 -2.91 -0.01 -2.18 16 33 H 0.12 -0.87 7.96 -2.39 -0.02 -0.89 16 34 H 0.40 -5.58 8.70 -74.06 -0.64 -6.22 16 35 H -0.28 0.82 7.11 99.48 0.71 1.53 16 36 H -0.30 -0.30 7.11 99.48 0.71 0.40 16 37 H 0.16 -1.31 6.41 -2.91 -0.02 -1.33 16 38 H 0.08 0.12 8.10 -2.38 -0.02 0.10 16 39 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: 0.00 -24.09 331.46 0.19 -23.90 By element: Atomic # 1 Polarization: -15.36 SS G_CDS: -0.12 Total: -15.48 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 3.70 Total: 11.53 kcal Atomic # 7 Polarization: -0.39 SS G_CDS: -2.57 Total: -2.96 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -3.57 Total: -12.08 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.70 Total: -1.05 kcal Atomic # 14 Polarization: -5.91 SS G_CDS: 2.04 Total: -3.86 kcal Total: -24.09 0.19 -23.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_12335834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.288 kcal (2) G-P(sol) polarization free energy of solvation -24.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds