Wall clock time and date at job start Sat Mar 6 2021 18:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00101 * 2 1 4 4 H 1.08999 * 112.85222 * 18.80143 * 3 2 1 5 5 C 1.53789 * 113.61660 * 149.99948 * 3 2 1 6 6 C 1.53777 * 87.08091 * 139.97959 * 5 3 2 7 7 H 1.08996 * 113.61910 * 89.19990 * 6 5 3 8 8 C 1.53004 * 113.61108 * 220.01646 * 6 5 3 9 9 N 1.46502 * 109.47210 * 184.99666 * 8 6 5 10 10 C 1.34774 * 120.00116 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99996 * 180.02562 * 10 9 8 13 13 C 1.50697 * 109.47013 * 180.02562 * 12 10 9 14 14 C 1.38234 * 120.00157 * 89.99644 * 13 12 10 15 15 C 1.38240 * 120.00060 * 180.02562 * 14 13 12 16 16 C 1.38234 * 119.99847 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99669 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.47341 * 300.00231 * 17 16 15 19 19 Si 1.86300 * 109.46849 * 180.02562 * 17 16 15 20 20 C 1.38236 * 120.00145 * 0.25623 * 16 15 14 21 21 C 1.38230 * 119.99582 * 359.47130 * 20 16 15 22 22 C 1.53783 * 87.08236 * 334.56439 * 6 5 3 23 23 H 1.09007 * 109.46778 * 60.00632 * 1 2 3 24 24 H 1.09000 * 109.47720 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47694 * 300.00464 * 1 2 3 26 26 H 1.08997 * 113.61323 * 25.42697 * 5 3 2 27 27 H 1.09000 * 113.68596 * 254.53882 * 5 3 2 28 28 H 1.09007 * 109.46875 * 65.00511 * 8 6 5 29 29 H 1.08997 * 109.47034 * 305.00470 * 8 6 5 30 30 H 0.97001 * 119.99643 * 0.02562 * 9 8 6 31 31 H 1.09000 * 109.47163 * 59.99785 * 12 10 9 32 32 H 1.09002 * 109.46625 * 299.99880 * 12 10 9 33 33 H 1.07998 * 120.00251 * 359.97438 * 14 13 12 34 34 H 1.07997 * 119.99775 * 179.97438 * 15 14 13 35 35 H 1.09000 * 109.46989 * 60.00562 * 17 16 15 36 36 H 0.96693 * 114.00306 * 299.99773 * 18 17 16 37 37 H 1.48506 * 110.00048 * 58.68772 * 19 17 16 38 38 H 1.48502 * 109.99996 * 180.02562 * 19 17 16 39 39 H 1.07994 * 119.99924 * 179.71715 * 20 16 15 40 40 H 1.08004 * 119.99802 * 180.27507 * 21 20 16 41 41 H 1.09005 * 113.61055 * 139.98129 * 22 6 5 42 42 H 1.08991 * 113.61719 * 270.88651 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 0.3237 5 6 3.3756 1.3719 0.7046 6 6 3.8227 2.3180 -0.4222 7 1 3.6236 3.3693 -0.2144 8 6 5.2544 2.0678 -0.9005 9 7 5.6262 3.0884 -1.8837 10 6 6.8507 3.0676 -2.4464 11 8 7.6446 2.2037 -2.1392 12 6 7.2333 4.1177 -3.4572 13 6 8.6429 3.8705 -3.9294 14 6 8.8724 3.0613 -5.0264 15 6 10.1655 2.8341 -5.4592 16 6 11.2290 3.4164 -4.7952 17 6 12.6386 3.1682 -5.2667 18 8 12.9206 1.7685 -5.2095 19 14 13.8312 4.0867 -4.1691 20 6 10.9997 4.2217 -3.6953 21 6 9.7063 4.4535 -3.2660 22 6 2.7535 1.6487 -1.3018 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.9088 0.4213 0.7139 27 1 3.3397 1.8467 1.6850 28 1 5.3168 1.0812 -1.3598 29 1 5.9351 2.1167 -0.0507 30 1 4.9910 3.7790 -2.1296 31 1 7.1714 5.1041 -2.9976 32 1 6.5521 4.0694 -4.3068 33 1 8.0416 2.6060 -5.5449 34 1 10.3448 2.2016 -6.3160 35 1 12.7454 3.5187 -6.2933 36 1 12.8448 1.3879 -4.3238 37 1 13.6733 3.6401 -2.7616 38 1 15.2251 3.8506 -4.6239 39 1 11.8308 4.6730 -3.1738 40 1 9.5269 5.0862 -2.4093 41 1 2.2141 2.3475 -1.9412 42 1 3.1167 0.7738 -1.8409 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_12335836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:27:41 Heat of formation + Delta-G solvation = -64.216321 kcal Electronic energy + Delta-G solvation = -22422.773209 eV Core-core repulsion = 18949.113958 eV Total energy + Delta-G solvation = -3473.659251 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.151 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25159 -40.59552 -39.92475 -37.83852 -37.42172 -35.23786 -34.05200 -31.93289 -30.41601 -28.67499 -27.37701 -26.67866 -25.61341 -23.81239 -23.33104 -22.20152 -21.43709 -20.46961 -18.60492 -18.25902 -17.66831 -17.25706 -16.95069 -16.65470 -16.49309 -16.30027 -16.13531 -16.05686 -15.74353 -15.28653 -14.84673 -14.67219 -14.50246 -14.22609 -13.98895 -13.58227 -13.44055 -13.31491 -13.09971 -12.86891 -12.78506 -12.44472 -12.27952 -12.03698 -11.95046 -11.71095 -11.62912 -11.41439 -10.97877 -10.63398 -10.42997 -10.10009 -9.87157 -9.61522 -4.96120 0.24028 0.45819 1.29012 1.58685 1.64737 1.92463 2.17103 2.77855 2.89172 3.37502 3.48068 3.58962 3.61691 3.80147 3.81516 3.83905 3.91284 4.05849 4.07403 4.15239 4.30744 4.37165 4.46162 4.47624 4.53689 4.54414 4.64018 4.66630 4.72940 4.74285 4.80865 4.83124 4.85929 5.00553 5.03936 5.09199 5.14382 5.30017 5.38316 5.48728 5.53187 5.59801 6.02318 6.31018 6.41569 6.56911 7.28151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.053 3.947 4 H 0.107 0.893 5 C -0.134 4.134 6 C -0.105 4.105 7 H 0.126 0.874 8 C 0.134 3.866 9 N -0.716 5.716 10 C 0.509 3.491 11 O -0.585 6.585 12 C -0.097 4.097 13 C -0.072 4.072 14 C -0.117 4.117 15 C -0.108 4.108 16 C -0.126 4.126 17 C -0.086 4.086 18 O -0.550 6.550 19 Si 0.773 3.227 20 C -0.123 4.123 21 C -0.110 4.110 22 C -0.148 4.148 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.419 0.581 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.384 0.616 37 H -0.290 1.290 38 H -0.301 1.301 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.088 0.912 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 7.985 0.580 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.004 4.004 4 H 0.125 0.875 5 C -0.172 4.172 6 C -0.124 4.124 7 H 0.143 0.857 8 C 0.010 3.990 9 N -0.369 5.369 10 C 0.297 3.703 11 O -0.465 6.465 12 C -0.136 4.136 13 C -0.072 4.072 14 C -0.135 4.135 15 C -0.126 4.126 16 C -0.126 4.126 17 C -0.194 4.194 18 O -0.358 6.358 19 Si 0.679 3.321 20 C -0.141 4.141 21 C -0.128 4.128 22 C -0.186 4.186 23 H 0.069 0.931 24 H 0.106 0.894 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.256 0.744 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.233 0.767 37 H -0.217 1.217 38 H -0.230 1.230 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.106 0.894 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.659 7.225 0.717 9.206 hybrid contribution -0.553 -1.273 0.236 1.408 sum -6.212 5.952 0.953 8.656 Atomic orbital electron populations 1.22932 0.79924 1.03483 1.00842 1.87926 1.21190 1.28781 1.94748 1.23910 0.94195 0.85187 0.97147 0.87546 1.23240 0.95334 0.99893 0.98701 1.22495 0.92027 1.01039 0.96816 0.85655 1.21210 0.95337 0.91136 0.91310 1.45888 1.15350 1.32192 1.43477 1.21111 0.81410 0.85951 0.81845 1.90747 1.51870 1.39969 1.63928 1.20761 0.94142 0.99478 0.99207 1.19602 0.95133 0.97213 0.95253 1.21245 0.97213 0.97930 0.97148 1.21088 0.92342 0.99152 1.00055 1.20340 0.95945 0.99400 0.96951 1.25298 0.97595 0.86472 1.10072 1.86546 1.91600 1.22106 1.35589 0.94101 0.74460 0.88828 0.74714 1.21169 0.97794 0.98766 0.96346 1.21241 0.91918 1.00042 0.99615 1.23563 0.97264 1.00706 0.97054 0.93116 0.89426 0.92962 0.90448 0.89472 0.93326 0.92432 0.74357 0.84604 0.85238 0.85134 0.85928 0.85665 0.76704 1.21659 1.22982 0.84172 0.83964 0.89387 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.41 -1.51 10.71 -148.98 -1.60 -3.11 16 3 C 0.05 -0.11 4.31 31.12 0.13 0.03 16 4 H 0.11 -0.63 7.87 -2.39 -0.02 -0.65 16 5 C -0.13 0.33 7.47 31.12 0.23 0.56 16 6 C -0.11 0.61 3.75 -10.27 -0.04 0.57 16 7 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 8 C 0.13 -0.11 5.51 86.38 0.48 0.36 16 9 N -0.72 2.78 5.56 -463.04 -2.57 0.21 16 10 C 0.51 0.96 7.82 87.66 0.69 1.64 16 11 O -0.59 -7.72 16.03 -3.05 -0.05 -7.77 16 12 C -0.10 0.48 5.83 29.10 0.17 0.65 16 13 C -0.07 -0.12 4.37 -19.87 -0.09 -0.20 16 14 C -0.12 -0.42 9.70 22.27 0.22 -0.21 16 15 C -0.11 -0.55 9.61 22.27 0.21 -0.34 16 16 C -0.13 -0.49 5.39 -19.87 -0.11 -0.60 16 17 C -0.09 -0.23 2.82 71.24 0.20 -0.03 16 18 O -0.55 -3.65 12.77 -148.98 -1.90 -5.55 16 19 Si 0.77 0.48 29.79 68.60 2.04 2.53 16 20 C -0.12 -0.27 8.67 22.27 0.19 -0.07 16 21 C -0.11 -0.17 9.70 22.27 0.22 0.05 16 22 C -0.15 0.57 7.46 31.12 0.23 0.80 16 23 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 24 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.08 0.10 8.10 -2.39 -0.02 0.08 16 27 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.05 0.19 7.84 -2.38 -0.02 0.17 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.42 -4.70 8.47 -92.71 -0.79 -5.48 16 31 H 0.14 -1.49 8.09 -2.39 -0.02 -1.51 16 32 H 0.13 -1.27 8.08 -2.39 -0.02 -1.29 16 33 H 0.13 0.09 8.06 -2.91 -0.02 0.06 16 34 H 0.12 0.56 8.06 -2.91 -0.02 0.54 16 35 H 0.13 0.08 7.96 -2.39 -0.02 0.06 16 36 H 0.38 0.81 8.70 -74.06 -0.64 0.16 16 37 H -0.29 -1.55 7.11 99.48 0.71 -0.84 16 38 H -0.30 -2.37 7.11 99.48 0.71 -1.66 16 39 H 0.14 -0.25 4.88 -2.91 -0.01 -0.26 16 40 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 41 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 42 H 0.07 0.03 7.89 -2.39 -0.02 0.02 16 Total: 0.00 -22.84 351.42 -0.48 -23.31 By element: Atomic # 1 Polarization: -13.63 SS G_CDS: -0.37 Total: -14.00 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 3.97 Total: 4.38 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -2.57 Total: 0.21 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -3.55 Total: -16.43 kcal Atomic # 14 Polarization: 0.48 SS G_CDS: 2.04 Total: 2.53 kcal Total: -22.84 -0.48 -23.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_12335836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.903 kcal (2) G-P(sol) polarization free energy of solvation -22.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds