Wall clock time and date at job start Sat Mar 6 2021 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99903 * 2 1 4 4 H 1.08993 * 112.90736 * 341.24804 * 3 2 1 5 5 C 1.53962 * 113.66723 * 112.55150 * 3 2 1 6 6 C 1.53782 * 87.11063 * 139.88843 * 5 3 2 7 7 H 1.08997 * 113.61225 * 89.18406 * 6 5 3 8 8 C 1.52998 * 113.68747 * 220.07804 * 6 5 3 9 9 N 1.46499 * 109.46882 * 272.53320 * 8 6 5 10 10 C 1.34783 * 119.99918 * 180.02562 * 9 8 6 11 11 O 1.21597 * 119.99943 * 0.02562 * 10 9 8 12 12 C 1.47576 * 120.00088 * 180.02562 * 10 9 8 13 13 C 1.40202 * 119.83262 * 0.02562 * 12 10 9 14 14 C 1.36227 * 120.37891 * 179.97438 * 13 12 10 15 15 C 1.39874 * 119.95941 * 0.02562 * 14 13 12 16 16 C 1.46262 * 133.84038 * 179.97438 * 15 14 13 17 17 C 1.50698 * 126.48159 * 359.97438 * 16 15 14 18 18 O 1.42895 * 109.47570 * 74.99651 * 17 16 15 19 19 Si 1.86304 * 109.46970 * 194.99885 * 17 16 15 20 20 C 1.34462 * 107.03366 * 180.02562 * 16 15 14 21 21 N 1.36557 * 109.98409 * 0.02562 * 20 16 15 22 22 C 1.37834 * 109.86615 * 359.97438 * 21 20 16 23 23 C 1.38641 * 133.38468 * 180.28391 * 22 21 20 24 24 C 1.53781 * 87.08260 * 334.63747 * 6 5 3 25 25 H 1.08998 * 109.46809 * 299.99633 * 1 2 3 26 26 H 1.08997 * 109.47166 * 60.00208 * 1 2 3 27 27 H 1.09001 * 109.46682 * 179.97438 * 1 2 3 28 28 H 1.08997 * 113.53543 * 25.33518 * 5 3 2 29 29 H 1.08994 * 113.66446 * 254.45720 * 5 3 2 30 30 H 1.08995 * 109.47742 * 32.53801 * 8 6 5 31 31 H 1.09003 * 109.47049 * 152.53819 * 8 6 5 32 32 H 0.96999 * 120.00576 * 0.02562 * 9 8 6 33 33 H 1.08002 * 119.80683 * 0.02562 * 13 12 10 34 34 H 1.07997 * 120.01896 * 180.02562 * 14 13 12 35 35 H 1.09000 * 109.46950 * 314.99253 * 17 16 15 36 36 H 0.96692 * 114.00512 * 180.02562 * 18 17 16 37 37 H 1.48508 * 109.99631 * 299.99676 * 19 17 16 38 38 H 1.48496 * 110.00149 * 61.31300 * 19 17 16 39 39 H 1.07994 * 125.00184 * 179.97438 * 20 16 15 40 40 H 0.97001 * 125.06629 * 180.02562 * 21 20 16 41 41 H 1.08006 * 120.16689 * 359.93916 * 23 22 21 42 42 H 1.09002 * 113.61445 * 139.98212 * 24 6 5 43 43 H 1.09002 * 113.61408 * 270.79943 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7556 1.6501 1.3023 6 6 3.8253 2.3175 0.4218 7 1 3.6264 3.3689 0.2145 8 6 5.2575 2.0662 0.8977 9 7 5.6316 3.0863 1.8803 10 6 6.8574 3.0652 2.4403 11 8 7.6530 2.1997 2.1295 12 6 7.2341 4.0925 3.4306 13 6 6.3139 5.0885 3.7867 14 6 6.6497 6.0419 4.7000 15 6 7.9191 6.0303 5.2873 16 6 8.5870 6.8794 6.2733 17 6 8.0030 8.0893 6.9560 18 8 7.0701 7.6695 7.9537 19 14 9.3694 9.0703 7.7571 20 6 9.8209 6.3769 6.4545 21 7 9.9973 5.2767 5.6651 22 6 8.8527 5.0347 4.9364 23 6 8.5009 4.0653 4.0097 24 6 3.3756 1.3719 -0.7045 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1177 0.7747 1.8413 29 1 2.2180 2.3499 1.9420 30 1 5.3202 1.0795 1.3565 31 1 5.9370 2.1150 0.0467 32 1 4.9972 3.7770 2.1280 33 1 5.3329 5.0994 3.3350 34 1 5.9362 6.8062 4.9704 35 1 7.4929 8.7109 6.2201 36 1 6.6538 8.3979 8.4344 37 1 10.0728 8.2339 8.7626 38 1 10.3294 9.5397 6.7260 39 1 10.5633 6.7841 7.1249 40 1 10.8072 4.7444 5.6239 41 1 9.2065 3.2949 3.7356 42 1 3.3385 1.8471 -1.6848 43 1 3.9083 0.4209 -0.7150 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_12335838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:27:44 Heat of formation + Delta-G solvation = -23.488940 kcal Electronic energy + Delta-G solvation = -25330.450681 eV Core-core repulsion = 21536.679309 eV Total energy + Delta-G solvation = -3793.771371 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.56696 -41.12381 -40.27016 -37.91851 -37.51110 -37.40973 -35.38766 -33.43606 -31.17690 -30.84062 -28.98673 -27.41444 -26.67359 -26.42982 -24.75890 -23.72553 -23.11951 -21.66343 -20.73402 -20.48301 -19.30936 -18.53203 -18.24212 -17.75313 -17.28718 -17.10429 -16.67384 -16.44157 -16.02264 -15.83120 -15.70701 -15.45233 -15.19402 -15.07779 -14.85481 -14.76355 -14.55928 -14.21987 -13.85022 -13.58434 -13.42220 -13.26122 -12.90485 -12.70855 -12.57928 -12.43370 -12.16684 -11.97917 -11.91926 -11.71347 -11.42123 -11.13278 -10.88259 -10.41498 -10.22282 -10.14654 -9.46967 -8.91363 -4.91320 -0.41927 0.30418 1.22308 1.37931 1.71396 1.79914 1.84839 2.01847 2.16188 2.80093 2.89071 3.43383 3.50198 3.56129 3.61455 3.67416 3.74823 3.82446 3.84181 4.02852 4.06163 4.12453 4.21146 4.29911 4.30837 4.42510 4.47011 4.50225 4.55254 4.65467 4.71362 4.76273 4.82227 4.83868 4.87114 4.90641 5.02027 5.13953 5.15069 5.24359 5.33490 5.39054 5.44119 5.51165 5.88279 6.32350 6.35241 6.43384 7.03980 7.09689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.054 3.946 4 H 0.107 0.893 5 C -0.150 4.150 6 C -0.108 4.108 7 H 0.125 0.875 8 C 0.133 3.867 9 N -0.706 5.706 10 C 0.559 3.441 11 O -0.586 6.586 12 C -0.130 4.130 13 C -0.105 4.105 14 C -0.075 4.075 15 C -0.083 4.083 16 C -0.187 4.187 17 C -0.044 4.044 18 O -0.567 6.567 19 Si 0.780 3.220 20 C 0.065 3.935 21 N -0.580 5.580 22 C 0.066 3.934 23 C -0.071 4.071 24 C -0.131 4.131 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.417 0.583 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.400 0.600 37 H -0.291 1.291 38 H -0.292 1.292 39 H 0.185 0.815 40 H 0.433 0.567 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 8.270 1.603 9.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.003 4.003 4 H 0.125 0.875 5 C -0.188 4.188 6 C -0.126 4.126 7 H 0.143 0.857 8 C 0.009 3.991 9 N -0.359 5.359 10 C 0.348 3.652 11 O -0.467 6.467 12 C -0.135 4.135 13 C -0.124 4.124 14 C -0.093 4.093 15 C -0.088 4.088 16 C -0.195 4.195 17 C -0.154 4.154 18 O -0.377 6.377 19 Si 0.685 3.315 20 C -0.064 4.064 21 N -0.183 5.183 22 C -0.040 4.040 23 C -0.092 4.092 24 C -0.169 4.169 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.255 0.745 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.104 0.896 36 H 0.251 0.749 37 H -0.218 1.218 38 H -0.219 1.219 39 H 0.202 0.798 40 H 0.273 0.727 41 H 0.145 0.855 42 H 0.107 0.893 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.143 6.886 1.295 7.679 hybrid contribution 0.228 -0.655 -0.287 0.750 sum -2.915 6.232 1.008 6.953 Atomic orbital electron populations 1.22932 0.79934 1.03485 1.00838 1.87926 1.21179 1.28711 1.94728 1.23919 0.94214 0.85210 0.96992 0.87485 1.23618 0.97250 1.00763 0.97156 1.22509 0.91767 1.01215 0.97122 0.85671 1.21338 0.95700 0.90910 0.91131 1.45749 1.14560 1.32280 1.43277 1.18376 0.82055 0.84074 0.80739 1.90773 1.52066 1.39636 1.64250 1.19502 0.95295 0.98261 1.00423 1.20972 0.99692 0.93550 0.98213 1.20470 0.94282 0.99279 0.95309 1.19564 0.94982 0.95652 0.98598 1.20104 0.94536 1.01323 1.03495 1.24167 1.01264 0.96084 0.93855 1.86482 1.60128 1.38711 1.52376 0.94044 0.76145 0.82718 0.78582 1.22001 0.98700 0.89120 0.96551 1.41729 1.14292 1.26098 1.36198 1.18198 0.88532 0.98842 0.98456 1.20121 0.96723 0.97179 0.95217 1.23224 0.95224 0.99865 0.98566 0.93163 0.92929 0.89405 0.90721 0.89434 0.92625 0.91772 0.74478 0.82193 0.83095 0.89609 0.74895 1.21796 1.21901 0.79803 0.72749 0.85465 0.89329 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.41 -1.72 10.72 -148.98 -1.60 -3.31 16 3 C 0.05 -0.07 4.32 31.18 0.13 0.06 16 4 H 0.11 -0.56 7.87 -2.39 -0.02 -0.58 16 5 C -0.15 0.38 7.47 31.18 0.23 0.61 16 6 C -0.11 0.46 3.75 -10.27 -0.04 0.42 16 7 H 0.13 -1.10 8.14 -2.39 -0.02 -1.12 16 8 C 0.13 0.17 5.51 86.38 0.48 0.64 16 9 N -0.71 -0.62 5.50 -466.21 -2.57 -3.19 16 10 C 0.56 4.80 7.76 86.71 0.67 5.47 16 11 O -0.59 -10.14 16.31 -4.02 -0.07 -10.20 16 12 C -0.13 -0.83 5.87 -20.08 -0.12 -0.95 16 13 C -0.10 -0.08 9.46 22.28 0.21 0.14 16 14 C -0.08 -0.18 10.03 22.20 0.22 0.04 16 15 C -0.08 -0.55 6.35 -20.14 -0.13 -0.68 16 16 C -0.19 -0.91 5.61 -18.64 -0.10 -1.01 16 17 C -0.04 0.05 3.05 71.24 0.22 0.27 16 18 O -0.57 0.37 12.86 -148.98 -1.92 -1.55 16 19 Si 0.78 -3.23 30.79 68.60 2.11 -1.12 16 20 C 0.07 0.21 10.43 83.09 0.87 1.08 16 21 N -0.58 -1.79 6.07 -187.71 -1.14 -2.93 16 22 C 0.07 0.48 7.26 38.96 0.28 0.76 16 23 C -0.07 -0.59 9.61 22.63 0.22 -0.37 16 24 C -0.13 0.24 7.47 31.12 0.23 0.47 16 25 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.07 0.12 7.90 -2.39 -0.02 0.10 16 29 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.06 0.29 7.85 -2.39 -0.02 0.27 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.42 -2.46 6.46 -92.71 -0.60 -3.06 16 33 H 0.16 -1.14 6.36 -2.91 -0.02 -1.16 16 34 H 0.15 -0.34 8.06 -2.91 -0.02 -0.36 16 35 H 0.09 -0.40 7.96 -2.39 -0.02 -0.41 16 36 H 0.40 -4.58 8.74 -74.06 -0.65 -5.23 16 37 H -0.29 -0.55 7.04 99.48 0.70 0.16 16 38 H -0.29 -0.50 7.11 99.48 0.71 0.21 16 39 H 0.19 -0.19 6.30 -2.91 -0.02 -0.21 16 40 H 0.43 -1.12 8.96 -92.71 -0.83 -1.95 16 41 H 0.13 1.15 7.62 -2.91 -0.02 1.13 16 42 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.08 0.12 8.10 -2.39 -0.02 0.10 16 Total: 0.00 -26.01 360.38 -1.55 -27.55 By element: Atomic # 1 Polarization: -12.42 SS G_CDS: -0.98 Total: -13.40 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 4.61 Total: 8.15 kcal Atomic # 7 Polarization: -2.42 SS G_CDS: -3.70 Total: -6.12 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -3.58 Total: -15.06 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.11 Total: -1.12 kcal Total: -26.01 -1.55 -27.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_12335838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.066 kcal (2) G-P(sol) polarization free energy of solvation -26.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds