Wall clock time and date at job start Sat Mar 6 2021 18:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99905 * 2 1 4 4 H 1.09006 * 112.90937 * 341.24973 * 3 2 1 5 5 C 1.53779 * 113.61593 * 112.50233 * 3 2 1 6 6 C 1.53784 * 87.08045 * 139.98101 * 5 3 2 7 7 H 1.08994 * 113.61477 * 89.11454 * 6 5 3 8 8 C 1.52997 * 113.61270 * 220.02125 * 6 5 3 9 9 N 1.46498 * 109.47070 * 272.49429 * 8 6 5 10 10 C 1.34783 * 120.00214 * 179.97438 * 9 8 6 11 11 O 1.21546 * 119.99742 * 0.02562 * 10 9 8 12 12 C 1.47847 * 120.00123 * 180.02562 * 10 9 8 13 13 C 1.39550 * 120.13939 * 359.97438 * 12 10 9 14 14 C 1.38067 * 119.83910 * 180.02562 * 13 12 10 15 15 Br 1.89101 * 119.93549 * 179.97438 * 14 13 12 16 16 C 1.38423 * 120.12733 * 0.02562 * 14 13 12 17 17 C 1.38367 * 120.28093 * 359.97438 * 16 14 13 18 18 C 1.50699 * 119.91640 * 180.02562 * 17 16 14 19 19 O 1.42896 * 109.46921 * 244.99719 * 18 17 16 20 20 Si 1.86292 * 109.47593 * 4.99923 * 18 17 16 21 21 C 1.37942 * 120.15602 * 359.71903 * 17 16 14 22 22 C 1.53779 * 113.61102 * 210.00216 * 3 2 1 23 23 H 1.08998 * 109.46939 * 300.00108 * 1 2 3 24 24 H 1.08998 * 109.47050 * 59.99797 * 1 2 3 25 25 H 1.09001 * 109.46818 * 180.02562 * 1 2 3 26 26 H 1.09002 * 113.61557 * 25.43213 * 5 3 2 27 27 H 1.09004 * 113.61501 * 254.52634 * 5 3 2 28 28 H 1.08998 * 109.47573 * 32.49481 * 8 6 5 29 29 H 1.09003 * 109.47157 * 152.50001 * 8 6 5 30 30 H 0.96997 * 120.00287 * 0.02562 * 9 8 6 31 31 H 1.07999 * 120.07519 * 0.02562 * 13 12 10 32 32 H 1.08001 * 119.85736 * 179.97438 * 16 14 13 33 33 H 1.09004 * 109.46828 * 125.00325 * 18 17 16 34 34 H 0.96704 * 114.00128 * 180.02562 * 19 18 17 35 35 H 1.48498 * 110.00279 * 178.68085 * 20 18 17 36 36 H 1.48500 * 109.99979 * 300.00026 * 20 18 17 37 37 H 1.07999 * 120.05997 * 180.27909 * 21 17 16 38 38 H 1.08997 * 113.61646 * 105.47095 * 22 3 2 39 39 H 1.08998 * 113.69354 * 334.57403 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3143 2.0798 -0.3228 5 6 2.7535 1.6489 1.3017 6 6 3.8227 2.3182 0.4221 7 1 3.6222 3.3693 0.2148 8 6 5.2543 2.0680 0.9005 9 7 5.6260 3.0887 1.8835 10 6 6.8506 3.0680 2.4463 11 8 7.6465 2.2028 2.1380 12 6 7.2255 4.0978 3.4387 13 6 6.3141 5.0929 3.7944 14 6 6.6710 6.0518 4.7214 15 35 5.4383 7.4019 5.2049 16 6 7.9297 6.0275 5.2968 17 6 8.8375 5.0432 4.9478 18 6 10.2054 5.0241 5.5798 19 8 11.1960 5.2649 4.5785 20 14 10.3056 6.3505 6.8841 21 6 8.4909 4.0757 4.0277 22 6 3.3755 1.3719 -0.7046 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1167 0.7741 1.8410 27 1 2.2141 2.3478 1.9411 28 1 5.3168 1.0815 1.3599 29 1 5.9352 2.1170 0.0507 30 1 4.9907 3.7791 2.1298 31 1 5.3320 5.1128 3.3456 32 1 8.2045 6.7800 6.0212 33 1 10.3806 4.0504 6.0375 34 1 12.1028 5.2663 4.9146 35 1 11.6391 6.3213 7.5369 36 1 10.0685 7.6829 6.2727 37 1 9.1991 3.3055 3.7598 38 1 3.3384 1.8470 -1.6848 39 1 3.9099 0.4219 -0.7147 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_12335870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:28:04 Heat of formation + Delta-G solvation = -50.242356 kcal Electronic energy + Delta-G solvation = -22747.712808 eV Core-core repulsion = 19090.379129 eV Total energy + Delta-G solvation = -3657.333679 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.046 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62277 -40.60619 -39.80455 -37.81898 -37.46731 -35.49859 -33.68608 -33.23046 -30.48725 -29.35062 -27.47492 -27.00021 -26.67571 -25.13737 -23.16645 -22.70113 -21.61824 -20.50484 -19.02061 -18.64678 -17.87271 -17.67764 -17.25858 -16.70801 -16.52739 -16.44389 -16.15922 -15.97050 -15.42291 -15.39021 -14.86778 -14.84283 -14.43479 -14.10404 -14.01503 -13.72511 -13.53532 -13.41766 -12.88218 -12.84742 -12.46678 -12.38991 -12.01942 -11.98448 -11.85532 -11.72812 -11.48604 -11.41702 -11.15483 -10.60727 -10.42377 -10.39090 -10.11903 -9.90846 -4.98281 -0.52505 -0.16438 0.41400 1.19683 1.50183 1.55698 1.88250 1.95705 2.43848 2.89096 3.14925 3.33825 3.50128 3.58192 3.61358 3.77821 3.82900 3.83820 3.87601 3.98481 4.10310 4.14874 4.28876 4.30904 4.47273 4.49182 4.55428 4.65261 4.73033 4.74988 4.82566 4.83935 4.87389 4.92504 5.01790 5.08873 5.12967 5.21891 5.35822 5.41385 6.32394 6.34563 6.52622 7.01599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.054 3.946 4 H 0.106 0.894 5 C -0.149 4.149 6 C -0.109 4.109 7 H 0.124 0.876 8 C 0.133 3.867 9 N -0.707 5.707 10 C 0.558 3.442 11 O -0.575 6.575 12 C -0.136 4.136 13 C -0.044 4.044 14 C -0.099 4.099 15 Br -0.026 7.026 16 C -0.064 4.064 17 C -0.078 4.078 18 C -0.088 4.088 19 O -0.557 6.557 20 Si 0.760 3.240 21 C -0.031 4.031 22 C -0.131 4.131 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.415 0.585 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.398 0.602 35 H -0.279 1.279 36 H -0.289 1.289 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 2.738 2.723 6.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.004 4.004 4 H 0.124 0.876 5 C -0.187 4.187 6 C -0.127 4.127 7 H 0.142 0.858 8 C 0.009 3.991 9 N -0.359 5.359 10 C 0.346 3.654 11 O -0.455 6.455 12 C -0.140 4.140 13 C -0.064 4.064 14 C -0.179 4.179 15 Br 0.060 6.940 16 C -0.083 4.083 17 C -0.079 4.079 18 C -0.197 4.197 19 O -0.368 6.368 20 Si 0.663 3.337 21 C -0.050 4.050 22 C -0.169 4.169 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.254 0.746 31 H 0.183 0.817 32 H 0.171 0.829 33 H 0.119 0.881 34 H 0.249 0.751 35 H -0.206 1.206 36 H -0.216 1.216 37 H 0.150 0.850 38 H 0.105 0.895 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.882 3.191 2.555 6.368 hybrid contribution 1.113 -0.255 -0.725 1.352 sum -3.769 2.936 1.830 5.116 Atomic orbital electron populations 1.22930 0.79970 1.03480 1.00804 1.87928 1.21128 1.28668 1.94738 1.23890 0.94207 0.85216 0.97088 0.87642 1.23591 0.97183 1.00820 0.97108 1.22518 0.91894 1.01142 0.97195 0.85849 1.21364 0.95663 0.90937 0.91095 1.45788 1.14581 1.32316 1.43245 1.18333 0.82143 0.84116 0.80820 1.90796 1.51723 1.39187 1.63840 1.19865 0.95976 0.97663 1.00492 1.21466 0.99839 0.90947 0.94135 1.21701 0.95547 0.98140 1.02470 1.96844 1.56718 1.48495 1.91968 1.21366 0.91849 0.97031 0.98083 1.19346 0.95078 0.95160 0.98355 1.25047 0.86389 1.10696 0.97528 1.86545 1.19678 1.94567 1.35971 0.94218 0.84761 0.75132 0.79556 1.21277 0.94668 0.97015 0.92069 1.23224 0.95248 0.99897 0.98509 0.93158 0.93018 0.89391 0.90447 0.89457 0.92185 0.91697 0.74642 0.81740 0.82943 0.88080 0.75054 1.20582 1.21612 0.85008 0.89470 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.41 -1.38 10.71 -148.98 -1.60 -2.98 16 3 C 0.05 -0.11 4.31 31.12 0.13 0.02 16 4 H 0.11 -0.61 7.87 -2.38 -0.02 -0.63 16 5 C -0.15 0.56 7.46 31.12 0.23 0.80 16 6 C -0.11 0.59 3.76 -10.27 -0.04 0.55 16 7 H 0.12 -1.18 8.14 -2.39 -0.02 -1.20 16 8 C 0.13 -0.06 5.51 86.38 0.48 0.42 16 9 N -0.71 0.81 5.51 -465.98 -2.57 -1.76 16 10 C 0.56 3.31 7.77 86.79 0.67 3.99 16 11 O -0.57 -8.51 16.35 -3.86 -0.06 -8.58 16 12 C -0.14 -0.40 5.87 -20.09 -0.12 -0.52 16 13 C -0.04 0.08 9.28 22.55 0.21 0.29 16 14 C -0.10 0.08 6.22 22.27 0.14 0.22 16 15 Br -0.03 0.05 33.69 -20.37 -0.69 -0.64 16 16 C -0.06 0.01 8.40 22.34 0.19 0.20 16 17 C -0.08 -0.14 5.38 -19.90 -0.11 -0.25 16 18 C -0.09 0.10 2.79 71.24 0.20 0.29 16 19 O -0.56 -1.20 12.81 -148.98 -1.91 -3.10 16 20 Si 0.76 -2.42 29.84 68.60 2.05 -0.37 16 21 C -0.03 -0.15 9.23 22.53 0.21 0.06 16 22 C -0.13 0.35 7.47 31.12 0.23 0.58 16 23 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.08 0.00 7.90 -2.39 -0.02 -0.02 16 27 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.06 0.18 7.84 -2.39 -0.02 0.16 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.42 -3.18 6.51 -92.71 -0.60 -3.79 16 31 H 0.17 -1.35 6.40 -2.91 -0.02 -1.37 16 32 H 0.15 -0.46 4.85 -2.91 -0.01 -0.47 16 33 H 0.10 -0.49 7.96 -2.38 -0.02 -0.51 16 34 H 0.40 -2.41 8.74 -74.05 -0.65 -3.06 16 35 H -0.28 -0.23 7.11 99.48 0.71 0.48 16 36 H -0.29 -0.93 7.04 99.48 0.70 -0.23 16 37 H 0.13 0.95 7.65 -2.91 -0.02 0.93 16 38 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.08 0.04 8.10 -2.39 -0.02 0.02 16 Total: 0.00 -19.63 348.18 -1.24 -20.88 By element: Atomic # 1 Polarization: -11.17 SS G_CDS: -0.13 Total: -11.29 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 3.66 Total: 7.84 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -2.57 Total: -1.76 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -3.57 Total: -14.66 kcal Atomic # 14 Polarization: -2.42 SS G_CDS: 2.05 Total: -0.37 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.64 kcal Total: -19.63 -1.24 -20.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_12335870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.366 kcal (2) G-P(sol) polarization free energy of solvation -19.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds