Wall clock time and date at job start Sat Mar 6 2021 18:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99697 * 2 1 4 4 H 1.08998 * 112.85356 * 18.80918 * 3 2 1 5 5 C 1.53784 * 113.61339 * 150.00561 * 3 2 1 6 6 C 1.53777 * 87.08531 * 139.97868 * 5 3 2 7 7 H 1.09001 * 113.61476 * 89.19355 * 6 5 3 8 8 C 1.52994 * 113.61826 * 220.01757 * 6 5 3 9 9 N 1.46503 * 109.47428 * 183.46993 * 8 6 5 10 10 C 1.34770 * 119.99826 * 180.02562 * 9 8 6 11 11 O 1.21696 * 120.00434 * 359.97438 * 10 9 8 12 12 C 1.46436 * 119.99692 * 180.02562 * 10 9 8 13 13 C 1.34814 * 119.99827 * 179.97438 * 12 10 9 14 14 C 1.47206 * 119.99785 * 179.97438 * 13 12 10 15 15 C 1.39836 * 120.16774 * 0.32289 * 14 13 12 16 16 C 1.37893 * 119.82402 * 180.23013 * 15 14 13 17 17 C 1.38403 * 120.16807 * 359.46824 * 16 15 14 18 18 C 1.50700 * 119.82534 * 180.27866 * 17 16 15 19 19 O 1.42902 * 109.47185 * 65.00304 * 18 17 16 20 20 Si 1.86305 * 109.47237 * 185.00044 * 18 17 16 21 21 C 1.38404 * 120.34900 * 0.25594 * 17 16 15 22 22 C 1.37896 * 120.16550 * 0.02562 * 21 17 16 23 23 C 1.53783 * 87.17039 * 334.61005 * 6 5 3 24 24 H 1.09001 * 109.47385 * 59.99811 * 1 2 3 25 25 H 1.08998 * 109.46679 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46890 * 299.99355 * 1 2 3 27 27 H 1.09002 * 113.61553 * 25.42944 * 5 3 2 28 28 H 1.09001 * 113.61057 * 254.53062 * 5 3 2 29 29 H 1.09003 * 109.46910 * 63.46956 * 8 6 5 30 30 H 1.09000 * 109.47229 * 303.46890 * 8 6 5 31 31 H 0.96995 * 119.99933 * 359.97438 * 9 8 6 32 32 H 1.07995 * 120.00077 * 359.97438 * 12 10 9 33 33 H 1.07996 * 120.00090 * 0.02562 * 13 12 10 34 34 H 1.08004 * 120.09359 * 359.97438 * 15 14 13 35 35 H 1.08002 * 119.91884 * 179.75241 * 16 15 14 36 36 H 1.08998 * 109.47440 * 304.99825 * 18 17 16 37 37 H 0.96704 * 113.99978 * 59.99649 * 19 18 17 38 38 H 1.48495 * 110.00271 * 180.02562 * 20 18 17 39 39 H 1.48505 * 109.99857 * 301.32275 * 20 18 17 40 40 H 1.08001 * 119.91754 * 180.02562 * 21 17 16 41 41 H 1.08002 * 120.08152 * 180.02562 * 22 21 17 42 42 H 1.09003 * 113.61238 * 139.94146 * 23 6 5 43 43 H 1.09004 * 113.61170 * 270.83922 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3756 1.3719 0.7044 6 6 3.8227 2.3182 -0.4223 7 1 3.6235 3.3695 -0.2144 8 6 5.2542 2.0681 -0.9008 9 7 5.6131 3.0670 -1.9106 10 6 6.8353 3.0423 -2.4781 11 8 7.6409 2.1907 -2.1515 12 6 7.1942 4.0411 -3.4871 13 6 8.4169 4.0168 -4.0544 14 6 8.7775 5.0205 -5.0691 15 6 7.8570 6.0048 -5.4421 16 6 8.2006 6.9386 -6.3968 17 6 9.4566 6.9100 -6.9773 18 6 9.8262 7.9382 -8.0153 19 8 9.8502 9.2345 -7.4143 20 14 11.5099 7.5437 -8.7083 21 6 10.3753 5.9425 -6.6092 22 6 10.0445 4.9983 -5.6602 23 6 2.7532 1.6512 -1.3033 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.9089 0.4213 0.7136 28 1 3.3384 1.8471 1.6847 29 1 5.3229 1.0709 -1.3356 30 1 5.9383 2.1439 -0.0556 31 1 4.9710 3.7456 -2.1712 32 1 6.4795 4.7972 -3.7766 33 1 9.1315 3.2605 -3.7652 34 1 6.8780 6.0311 -4.9868 35 1 7.4893 7.6970 -6.6890 36 1 9.0901 7.9239 -8.8191 37 1 10.4844 9.3202 -6.6893 38 1 11.8863 8.5507 -9.7327 39 1 12.5174 7.5286 -7.6173 40 1 11.3536 5.9269 -7.0664 41 1 10.7626 4.2441 -5.3737 42 1 2.2145 2.3515 -1.9416 43 1 3.1161 0.7770 -1.8441 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:28:10 Heat of formation + Delta-G solvation = -43.085243 kcal Electronic energy + Delta-G solvation = -23031.097911 eV Core-core repulsion = 19430.128832 eV Total energy + Delta-G solvation = -3600.969079 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.151 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09830 -40.61310 -40.13294 -37.92286 -37.46348 -35.29450 -35.09954 -32.08166 -31.53891 -29.37649 -27.56512 -26.88431 -26.60500 -24.25445 -23.91783 -23.02864 -21.99112 -20.93617 -20.18413 -18.63472 -18.51570 -17.82136 -17.05879 -16.92748 -16.63424 -16.39021 -16.29451 -16.23207 -15.97308 -15.82124 -15.41465 -15.04179 -14.73582 -14.47604 -14.20644 -14.03805 -13.78977 -13.60372 -13.46365 -13.43162 -12.95429 -12.88459 -12.44664 -12.23847 -12.11350 -11.96272 -11.72121 -11.62158 -11.42093 -11.35088 -11.05990 -10.61750 -10.42405 -10.16556 -9.97321 -9.25019 -4.93023 -0.55258 0.40245 0.88744 1.29938 1.58117 1.94398 2.16056 2.23010 2.81208 2.88636 3.39723 3.45838 3.54720 3.61938 3.73252 3.77641 3.82520 3.83658 3.96695 4.10824 4.18342 4.20164 4.30289 4.35853 4.46609 4.48514 4.54475 4.57438 4.66112 4.73193 4.81391 4.83168 4.86358 4.88910 4.96026 5.01319 5.10179 5.13984 5.16021 5.28583 5.39350 5.45972 5.47552 5.60853 5.90771 6.31427 6.45984 6.52886 7.20076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.053 3.947 4 H 0.106 0.894 5 C -0.132 4.132 6 C -0.107 4.107 7 H 0.123 0.877 8 C 0.133 3.867 9 N -0.710 5.710 10 C 0.539 3.461 11 O -0.595 6.595 12 C -0.210 4.210 13 C -0.020 4.020 14 C -0.081 4.081 15 C -0.101 4.101 16 C -0.104 4.104 17 C -0.109 4.109 18 C -0.082 4.082 19 O -0.547 6.547 20 Si 0.762 3.238 21 C -0.126 4.126 22 C -0.096 4.096 23 C -0.149 4.149 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.418 0.582 32 H 0.161 0.839 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.386 0.614 38 H -0.304 1.304 39 H -0.284 1.284 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.087 0.913 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 2.388 -0.966 5.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.004 4.004 4 H 0.124 0.876 5 C -0.170 4.170 6 C -0.126 4.126 7 H 0.141 0.859 8 C 0.009 3.991 9 N -0.361 5.361 10 C 0.329 3.671 11 O -0.478 6.478 12 C -0.230 4.230 13 C -0.040 4.040 14 C -0.081 4.081 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.191 4.191 19 O -0.355 6.355 20 Si 0.668 3.332 21 C -0.143 4.143 22 C -0.114 4.114 23 C -0.186 4.186 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.256 0.744 32 H 0.179 0.821 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.235 0.765 38 H -0.233 1.233 39 H -0.210 1.210 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.105 0.895 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.518 1.990 -1.261 4.234 hybrid contribution -0.318 1.007 0.909 1.393 sum -3.836 2.997 -0.352 4.881 Atomic orbital electron populations 1.22934 0.79931 1.03509 1.00817 1.87926 1.21178 1.28695 1.94734 1.23930 0.94213 0.85198 0.97066 0.87619 1.23228 0.95267 0.99901 0.98588 1.22497 0.91989 1.01047 0.97040 0.85884 1.21273 0.95591 0.91520 0.90728 1.45760 1.15007 1.33706 1.41606 1.18789 0.81839 0.84624 0.81829 1.90817 1.51341 1.40557 1.65099 1.22994 0.99300 1.01145 0.99568 1.22397 0.96065 0.94573 0.90966 1.19125 0.95119 0.96277 0.97621 1.21687 0.99961 0.93530 0.96667 1.21134 0.96192 0.98660 0.96180 1.20523 0.94986 0.96923 0.98524 1.25211 1.13737 0.82791 0.97374 1.86581 1.64520 1.30629 1.53815 0.94046 0.72902 0.87347 0.78860 1.21176 0.99785 0.95244 0.98109 1.21582 0.95773 0.98662 0.95415 1.23599 0.97219 1.00747 0.97070 0.93153 0.89358 0.92986 0.90181 0.89428 0.92827 0.92115 0.74427 0.82137 0.85730 0.83289 0.84632 0.85443 0.76470 1.23285 1.21031 0.83990 0.83803 0.89479 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.41 -1.56 10.72 -148.98 -1.60 -3.16 16 3 C 0.05 -0.09 4.31 31.18 0.13 0.05 16 4 H 0.11 -0.57 7.87 -2.39 -0.02 -0.59 16 5 C -0.13 0.28 7.47 31.12 0.23 0.51 16 6 C -0.11 0.52 3.75 -10.27 -0.04 0.48 16 7 H 0.12 -1.11 8.14 -2.39 -0.02 -1.13 16 8 C 0.13 0.04 5.50 86.38 0.47 0.51 16 9 N -0.71 0.94 5.55 -467.34 -2.59 -1.65 16 10 C 0.54 2.67 7.74 86.38 0.67 3.34 16 11 O -0.60 -8.77 16.23 -4.34 -0.07 -8.84 16 12 C -0.21 0.15 9.41 23.62 0.22 0.37 16 13 C -0.02 -0.02 9.46 23.84 0.23 0.20 16 14 C -0.08 0.04 5.87 -20.15 -0.12 -0.08 16 15 C -0.10 0.25 9.41 22.57 0.21 0.46 16 16 C -0.10 0.17 9.66 22.23 0.21 0.39 16 17 C -0.11 0.17 5.36 -19.79 -0.11 0.06 16 18 C -0.08 0.16 2.80 71.24 0.20 0.36 16 19 O -0.55 -0.72 12.83 -148.98 -1.91 -2.63 16 20 Si 0.76 -1.95 29.87 68.60 2.05 0.10 16 21 C -0.13 0.27 8.65 22.23 0.19 0.46 16 22 C -0.10 0.12 9.80 22.57 0.22 0.34 16 23 C -0.15 0.47 7.48 31.18 0.23 0.71 16 24 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 25 H 0.09 -0.23 8.14 -2.39 -0.02 -0.24 16 26 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.08 0.10 8.10 -2.39 -0.02 0.08 16 28 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.05 0.23 7.87 -2.39 -0.02 0.22 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.42 -3.49 8.45 -92.71 -0.78 -4.27 16 32 H 0.16 -1.25 6.07 -2.91 -0.02 -1.27 16 33 H 0.12 0.44 7.52 -2.91 -0.02 0.41 16 34 H 0.15 -1.10 6.17 -2.91 -0.02 -1.12 16 35 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 36 H 0.13 -0.48 7.96 -2.39 -0.02 -0.50 16 37 H 0.39 -1.54 8.70 -74.05 -0.64 -2.18 16 38 H -0.30 -1.67 7.11 99.48 0.71 -0.97 16 39 H -0.28 -0.36 7.00 99.48 0.70 0.34 16 40 H 0.14 -0.74 4.81 -2.91 -0.01 -0.76 16 41 H 0.14 -0.61 8.06 -2.91 -0.02 -0.63 16 42 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.07 0.06 7.92 -2.39 -0.02 0.04 16 Total: 0.00 -20.76 361.38 -0.30 -21.06 By element: Atomic # 1 Polarization: -13.87 SS G_CDS: -0.37 Total: -14.24 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 4.20 Total: 9.36 kcal Atomic # 7 Polarization: 0.94 SS G_CDS: -2.59 Total: -1.65 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -3.58 Total: -14.63 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.05 Total: 0.10 kcal Total: -20.76 -0.30 -21.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.026 kcal (2) G-P(sol) polarization free energy of solvation -20.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds