Wall clock time and date at job start Sat Mar 6 2021 18:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99672 * 2 1 4 4 H 1.08993 * 112.84923 * 341.19287 * 3 2 1 5 5 C 1.53958 * 113.66776 * 112.43885 * 3 2 1 6 6 C 1.53779 * 87.01917 * 139.92795 * 5 3 2 7 7 H 1.09001 * 113.61340 * 89.22944 * 6 5 3 8 8 C 1.52998 * 113.61695 * 220.04462 * 6 5 3 9 9 N 1.46496 * 109.47451 * 274.14124 * 8 6 5 10 10 C 1.34778 * 119.99999 * 179.97438 * 9 8 6 11 11 O 1.21567 * 119.99911 * 0.02562 * 10 9 8 12 12 C 1.47667 * 119.99765 * 179.97438 * 10 9 8 13 13 C 1.40003 * 120.45444 * 353.97661 * 12 10 9 14 14 N 1.31310 * 121.37569 * 180.02562 * 13 12 10 15 15 C 1.32820 * 121.88952 * 0.02562 * 14 13 12 16 16 N 1.37155 * 132.96137 * 179.97438 * 15 14 13 17 17 C 1.36941 * 110.11428 * 180.02562 * 16 15 14 18 18 C 1.34179 * 109.95044 * 0.02562 * 17 16 15 19 19 C 1.50705 * 126.59765 * 179.97438 * 18 17 16 20 20 O 1.42906 * 109.46837 * 105.02359 * 19 18 17 21 21 Si 1.86298 * 109.47205 * 345.02599 * 19 18 17 22 22 C 1.41020 * 120.08608 * 0.25776 * 15 14 13 23 23 C 1.39288 * 119.61442 * 359.48113 * 22 15 14 24 24 C 1.50697 * 121.02858 * 180.25497 * 23 22 15 25 25 C 1.53778 * 113.61069 * 209.99598 * 3 2 1 26 26 H 1.08994 * 109.47173 * 300.00152 * 1 2 3 27 27 H 1.08999 * 109.46652 * 60.00408 * 1 2 3 28 28 H 1.08996 * 109.46618 * 180.02562 * 1 2 3 29 29 H 1.08997 * 113.61212 * 25.40981 * 5 3 2 30 30 H 1.08998 * 113.66247 * 254.46217 * 5 3 2 31 31 H 1.08996 * 109.47070 * 154.13576 * 8 6 5 32 32 H 1.09007 * 109.46749 * 34.14244 * 8 6 5 33 33 H 0.97004 * 119.99697 * 359.97438 * 9 8 6 34 34 H 1.08002 * 119.31496 * 0.04678 * 13 12 10 35 35 H 0.97004 * 124.94066 * 0.02562 * 16 15 14 36 36 H 1.07995 * 125.02659 * 180.02562 * 17 16 15 37 37 H 1.08999 * 109.47166 * 225.02325 * 19 18 17 38 38 H 0.96695 * 113.99967 * 299.99559 * 20 19 18 39 39 H 1.48503 * 109.99968 * 179.97438 * 21 19 18 40 40 H 1.48500 * 109.99981 * 301.31952 * 21 19 18 41 41 H 1.08997 * 109.47044 * 263.96585 * 24 23 22 42 42 H 1.08995 * 109.47214 * 23.96326 * 24 23 22 43 43 H 1.09003 * 109.46882 * 143.96975 * 24 23 22 44 44 H 1.09002 * 113.61246 * 105.47079 * 25 3 2 45 45 H 1.08996 * 113.61863 * 334.57240 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0788 -0.3238 5 6 2.7532 1.6513 1.3033 6 6 3.8227 2.3182 0.4222 7 1 3.6235 3.3695 0.2143 8 6 5.2542 2.0682 0.9007 9 7 5.6131 3.0670 1.9105 10 6 6.8353 3.0425 2.4781 11 8 7.6400 2.1917 2.1517 12 6 7.1973 4.0497 3.4955 13 6 6.3281 5.1078 3.7871 14 7 6.6319 6.0136 4.6878 15 6 7.7736 5.9741 5.3655 16 7 8.3139 6.7806 6.3344 17 6 9.5382 6.3013 6.7172 18 6 9.8316 5.1899 6.0251 19 6 11.0831 4.3592 6.1476 20 8 10.7884 3.1562 6.8603 21 14 12.3818 5.3253 7.0700 22 6 8.7037 4.9420 5.1238 23 6 8.4128 3.9605 4.1793 24 6 9.3811 2.8401 3.8998 25 6 3.3755 1.3719 -0.7044 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1161 0.7772 1.8441 30 1 2.2144 2.3515 1.9416 31 1 5.9382 2.1439 0.0555 32 1 5.3230 1.0710 1.3356 33 1 4.9711 3.7461 2.1706 34 1 5.3880 5.1804 3.2604 35 1 7.8903 7.5749 6.6958 36 1 10.1737 6.7513 7.4655 37 1 11.4532 4.1108 5.1529 38 1 10.4537 3.3015 7.7558 39 1 13.6209 4.5167 7.1981 40 1 12.6741 6.5939 6.3557 41 1 9.9917 3.0953 3.0338 42 1 10.0245 2.6912 4.7668 43 1 8.8272 1.9235 3.6964 44 1 3.3384 1.8471 -1.6847 45 1 3.9088 0.4214 -0.7137 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_12890568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:28:31 Heat of formation + Delta-G solvation = -12.040131 kcal Electronic energy + Delta-G solvation = -28060.181842 eV Core-core repulsion = 24045.943399 eV Total energy + Delta-G solvation = -4014.238444 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.85399 -41.14962 -40.31939 -38.75807 -37.74775 -37.44882 -35.60096 -34.86831 -31.97912 -31.42450 -29.27943 -28.62654 -27.38764 -26.67274 -26.36505 -24.70420 -24.05528 -23.07329 -21.92692 -20.74940 -20.47577 -19.28879 -18.87376 -17.90386 -17.56095 -17.36498 -16.99762 -16.82384 -16.56122 -16.37051 -16.25932 -15.94646 -15.67873 -15.50913 -15.32635 -14.87161 -14.65308 -14.41221 -14.04945 -13.94266 -13.79291 -13.62241 -13.54619 -13.41536 -13.23093 -13.17062 -12.86006 -12.42576 -12.30545 -12.04483 -11.91928 -11.69638 -11.39756 -11.18198 -11.14762 -10.57441 -10.41172 -10.21247 -10.17986 -9.62516 -9.11570 -4.98369 -0.36427 -0.08857 1.35692 1.43660 1.65825 1.75548 1.78689 2.04561 2.06378 2.74518 2.89496 3.29993 3.47335 3.49428 3.58572 3.59440 3.64664 3.73962 3.77256 3.84746 3.85612 4.12220 4.15251 4.28509 4.31308 4.33373 4.45802 4.47581 4.55057 4.58050 4.64108 4.68476 4.74375 4.76627 4.83299 4.84388 4.87669 4.98137 5.02788 5.14549 5.17728 5.23689 5.30172 5.38129 5.47294 5.73239 6.23365 6.32569 6.45575 6.82099 6.88991 7.14632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.054 3.946 4 H 0.106 0.894 5 C -0.150 4.150 6 C -0.108 4.108 7 H 0.125 0.875 8 C 0.135 3.865 9 N -0.710 5.710 10 C 0.567 3.433 11 O -0.570 6.570 12 C -0.241 4.241 13 C 0.180 3.820 14 N -0.515 5.515 15 C 0.288 3.712 16 N -0.559 5.559 17 C 0.097 3.903 18 C -0.207 4.207 19 C -0.050 4.050 20 O -0.558 6.558 21 Si 0.806 3.194 22 C -0.168 4.168 23 C 0.059 3.941 24 C -0.121 4.121 25 C -0.130 4.130 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.414 0.586 34 H 0.195 0.805 35 H 0.439 0.561 36 H 0.232 0.768 37 H 0.093 0.907 38 H 0.395 0.605 39 H -0.306 1.306 40 H -0.281 1.281 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 6.825 4.552 9.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.004 4.004 4 H 0.124 0.876 5 C -0.188 4.188 6 C -0.127 4.127 7 H 0.142 0.858 8 C 0.012 3.988 9 N -0.362 5.362 10 C 0.355 3.645 11 O -0.450 6.450 12 C -0.248 4.248 13 C 0.011 3.989 14 N -0.228 5.228 15 C 0.054 3.946 16 N -0.166 5.166 17 C -0.029 4.029 18 C -0.214 4.214 19 C -0.159 4.159 20 O -0.366 6.366 21 Si 0.710 3.290 22 C -0.175 4.175 23 C 0.050 3.950 24 C -0.177 4.177 25 C -0.168 4.168 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.252 0.748 34 H 0.212 0.788 35 H 0.281 0.719 36 H 0.248 0.752 37 H 0.111 0.889 38 H 0.245 0.755 39 H -0.234 1.234 40 H -0.207 1.207 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.954 6.963 4.038 8.574 hybrid contribution -0.373 -0.409 -0.835 1.002 sum -3.327 6.554 3.202 8.017 Atomic orbital electron populations 1.22928 0.79973 1.03476 1.00802 1.87928 1.21138 1.28729 1.94734 1.23931 0.94236 0.85170 0.97056 0.87616 1.23608 0.97272 1.00776 0.97098 1.22513 0.91943 1.01157 0.97040 0.85753 1.21301 0.95649 0.91324 0.90530 1.45735 1.14583 1.33977 1.41952 1.18048 0.82104 0.83534 0.80815 1.90744 1.50829 1.39761 1.63708 1.20510 0.98494 1.01380 1.04439 1.22960 0.98248 0.86664 0.91002 1.66519 1.17689 1.28896 1.09673 1.18779 0.91310 0.91554 0.92952 1.41620 1.16885 1.25597 1.32515 1.22404 0.86210 0.94445 0.99871 1.20805 0.97892 1.00612 1.02118 1.24749 0.99726 0.90520 1.00929 1.86476 1.87927 1.29678 1.32526 0.94056 0.74598 0.75080 0.85223 1.19798 0.98234 0.97716 1.01758 1.20056 0.92743 0.92858 0.89299 1.21078 0.98002 0.96431 1.02229 1.23215 0.95195 0.99885 0.98544 0.93200 0.92969 0.89395 0.90651 0.89506 0.91767 0.92583 0.74820 0.78829 0.71904 0.75156 0.88922 0.75529 1.23397 1.20744 0.91118 0.89730 0.90191 0.89399 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.41 -1.73 10.72 -148.98 -1.60 -3.32 16 3 C 0.05 -0.07 4.31 31.18 0.13 0.07 16 4 H 0.11 -0.54 7.87 -2.39 -0.02 -0.55 16 5 C -0.15 0.40 7.48 31.18 0.23 0.63 16 6 C -0.11 0.48 3.75 -10.27 -0.04 0.45 16 7 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 8 C 0.14 0.08 5.50 86.38 0.47 0.56 16 9 N -0.71 -0.14 5.51 -466.16 -2.57 -2.71 16 10 C 0.57 4.45 7.72 86.73 0.67 5.12 16 11 O -0.57 -8.78 13.50 -3.93 -0.05 -8.83 16 12 C -0.24 -1.64 5.89 -19.99 -0.12 -1.75 16 13 C 0.18 0.43 10.67 85.20 0.91 1.34 16 14 N -0.51 -2.58 10.37 -191.75 -1.99 -4.57 16 15 C 0.29 1.26 8.42 134.02 1.13 2.39 16 16 N -0.56 2.07 6.04 -192.26 -1.16 0.91 16 17 C 0.10 -0.64 10.44 82.97 0.87 0.23 16 18 C -0.21 -0.04 5.57 -18.64 -0.10 -0.15 16 19 C -0.05 0.01 1.88 71.24 0.13 0.15 16 20 O -0.56 -0.39 11.66 -148.98 -1.74 -2.13 16 21 Si 0.81 -4.14 30.76 68.60 2.11 -2.03 16 22 C -0.17 -1.08 6.16 -20.19 -0.12 -1.20 16 23 C 0.06 0.55 5.98 -19.25 -0.12 0.43 16 24 C -0.12 -1.28 8.46 71.24 0.60 -0.68 16 25 C -0.13 0.25 7.47 31.12 0.23 0.48 16 26 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.07 0.11 7.92 -2.39 -0.02 0.09 16 30 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.06 0.25 7.88 -2.38 -0.02 0.23 16 33 H 0.41 -2.67 6.55 -92.71 -0.61 -3.27 16 34 H 0.20 -1.19 6.43 -2.91 -0.02 -1.21 16 35 H 0.44 -4.17 8.96 -92.71 -0.83 -5.00 16 36 H 0.23 -3.86 6.35 -2.91 -0.02 -3.88 16 37 H 0.09 0.33 7.13 -2.39 -0.02 0.31 16 38 H 0.39 -3.24 8.70 -74.06 -0.64 -3.88 16 39 H -0.31 -1.15 7.11 99.48 0.71 -0.45 16 40 H -0.28 0.22 7.11 99.48 0.71 0.93 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.81 4.79 -2.39 -0.01 0.80 16 43 H 0.08 1.13 5.96 -2.39 -0.01 1.11 16 44 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.08 0.11 8.10 -2.39 -0.02 0.09 16 Total: 0.00 -27.89 365.07 -1.86 -29.75 By element: Atomic # 1 Polarization: -15.34 SS G_CDS: -0.98 Total: -16.32 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.11 Total: 9.25 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -5.72 Total: -6.37 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -3.39 Total: -14.29 kcal Atomic # 14 Polarization: -4.14 SS G_CDS: 2.11 Total: -2.03 kcal Total: -27.89 -1.86 -29.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_12890568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.712 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds