Wall clock time and date at job start Sat Mar 6 2021 18:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00012 * 2 1 4 4 H 1.08998 * 112.85185 * 18.80430 * 3 2 1 5 5 C 1.53778 * 113.61540 * 149.99971 * 3 2 1 6 6 C 1.53784 * 87.08372 * 139.97989 * 5 3 2 7 7 H 1.08997 * 113.60737 * 89.20408 * 6 5 3 8 8 C 1.52996 * 113.61518 * 220.01932 * 6 5 3 9 9 N 1.46500 * 109.47011 * 183.47178 * 8 6 5 10 10 C 1.34778 * 120.00187 * 180.02562 * 9 8 6 11 11 O 1.21566 * 119.99801 * 359.97438 * 10 9 8 12 12 C 1.47715 * 120.00164 * 179.97438 * 10 9 8 13 13 C 1.39709 * 120.02442 * 179.97438 * 12 10 9 14 14 C 1.37663 * 119.97528 * 179.97438 * 13 12 10 15 15 C 1.39513 * 120.02552 * 0.02562 * 14 13 12 16 16 C 1.48269 * 119.97705 * 179.97438 * 15 14 13 17 17 C 1.39405 * 120.12705 * 179.97438 * 16 15 14 18 18 C 1.38000 * 119.86822 * 179.97438 * 17 16 15 19 19 C 1.38329 * 120.13300 * 0.02562 * 18 17 16 20 20 C 1.50702 * 119.87730 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47007 * 300.00263 * 20 19 18 22 22 Si 1.86300 * 109.47301 * 179.97438 * 20 19 18 23 23 C 1.38342 * 120.25472 * 0.25119 * 19 18 17 24 24 C 1.37998 * 120.12461 * 359.49313 * 23 19 18 25 25 C 1.39506 * 120.04465 * 0.25522 * 15 14 13 26 26 C 1.37661 * 120.02730 * 359.44736 * 25 15 14 27 27 C 1.53784 * 87.16973 * 334.61321 * 6 5 3 28 28 H 1.09000 * 109.46747 * 299.99975 * 1 2 3 29 29 H 1.09000 * 109.46816 * 59.99549 * 1 2 3 30 30 H 1.08990 * 109.47086 * 179.97438 * 1 2 3 31 31 H 1.09005 * 113.61319 * 25.43360 * 5 3 2 32 32 H 1.08998 * 113.61918 * 254.53598 * 5 3 2 33 33 H 1.09006 * 109.47198 * 63.47271 * 8 6 5 34 34 H 1.08998 * 109.47137 * 303.47154 * 8 6 5 35 35 H 0.97002 * 119.99527 * 0.02562 * 9 8 6 36 36 H 1.07997 * 120.01435 * 359.95790 * 13 12 10 37 37 H 1.07993 * 119.98868 * 180.02562 * 14 13 12 38 38 H 1.07991 * 120.06211 * 359.95668 * 17 16 15 39 39 H 1.08001 * 119.93259 * 179.97438 * 18 17 16 40 40 H 1.09004 * 109.46923 * 59.99831 * 20 19 18 41 41 H 0.96700 * 113.99509 * 299.99566 * 21 20 19 42 42 H 1.48498 * 109.99634 * 58.68378 * 22 20 19 43 43 H 1.48502 * 109.99691 * 180.02562 * 22 20 19 44 44 H 1.08002 * 119.93525 * 179.74604 * 23 19 18 45 45 H 1.07998 * 120.06582 * 180.22850 * 24 23 19 46 46 H 1.07999 * 119.98248 * 179.72374 * 25 15 14 47 47 H 1.08000 * 120.01728 * 180.25433 * 26 25 15 48 48 H 1.09001 * 113.60788 * 139.94121 * 27 6 5 49 49 H 1.09002 * 113.60836 * 270.83705 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 0.3238 5 6 3.3756 1.3719 0.7045 6 6 3.8228 2.3181 -0.4222 7 1 3.6236 3.3694 -0.2142 8 6 5.2543 2.0680 -0.9006 9 7 5.6133 3.0668 -1.9104 10 6 6.8355 3.0422 -2.4780 11 8 7.6402 2.1914 -2.1517 12 6 7.1973 4.0490 -3.4966 13 6 8.4643 4.0242 -4.0848 14 6 8.8002 4.9627 -5.0343 15 6 7.8761 5.9385 -5.4089 16 6 8.2392 6.9491 -6.4313 17 6 7.3182 7.9253 -6.8082 18 6 7.6620 8.8636 -7.7600 19 6 8.9175 8.8365 -8.3400 20 6 9.2866 9.8637 -9.3792 21 8 8.3902 9.7633 -10.4875 22 14 11.0303 9.5601 -9.9605 23 6 9.8336 7.8667 -7.9740 24 6 9.5029 6.9265 -7.0196 25 6 6.6128 5.9677 -4.8178 26 6 6.2726 5.0265 -3.8726 27 6 2.7533 1.6511 -1.3033 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9089 0.4213 0.7137 32 1 3.3385 1.8470 1.6848 33 1 5.3231 1.0707 -1.3355 34 1 5.9383 2.1437 -0.0554 35 1 4.9713 3.7459 -2.1705 36 1 9.1800 3.2694 -3.7946 37 1 9.7793 4.9435 -5.4895 38 1 6.3375 7.9469 -6.3566 39 1 6.9490 9.6200 -8.0531 40 1 9.2172 10.8610 -8.9449 41 1 8.3990 8.9003 -10.9236 42 1 11.1463 8.1917 -10.5256 43 1 11.4066 10.5669 -10.9852 44 1 10.8110 7.8479 -8.4332 45 1 10.2201 6.1721 -6.7320 46 1 5.8998 6.7263 -5.1053 47 1 5.2931 5.0468 -3.4181 48 1 2.2146 2.3515 -1.9416 49 1 3.1162 0.7770 -1.8440 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_13158362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:28:34 Heat of formation + Delta-G solvation = -28.937692 kcal Electronic energy + Delta-G solvation = -29060.036005 eV Core-core repulsion = 24919.464369 eV Total energy + Delta-G solvation = -4140.571636 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.49837 -40.83422 -40.32503 -39.22170 -37.66109 -37.44995 -35.44303 -34.01933 -32.59393 -31.59833 -31.07371 -29.14243 -27.50708 -26.84412 -26.60043 -24.65395 -24.47715 -23.26536 -22.56565 -22.25217 -21.38184 -20.57725 -19.29532 -18.55833 -17.83125 -17.69002 -17.19614 -16.80805 -16.69407 -16.46129 -16.29522 -16.09164 -16.03164 -15.85285 -15.42703 -15.29624 -15.06298 -14.92042 -14.79950 -14.42248 -14.21400 -14.08323 -14.04291 -13.59105 -13.53054 -13.43330 -13.18606 -12.87795 -12.77859 -12.58224 -12.44230 -12.09982 -11.97610 -11.93117 -11.72729 -11.53975 -11.42724 -11.09098 -10.80535 -10.57542 -10.42437 -10.19212 -10.06131 -9.94542 -9.06965 -4.93218 -0.68901 0.35269 0.41343 0.50337 1.30243 1.58783 1.78296 1.94825 2.04158 2.60820 2.88320 3.01183 3.37199 3.43042 3.48920 3.56693 3.63374 3.69461 3.79799 3.81463 3.85022 3.88810 4.02018 4.05121 4.12670 4.27412 4.28954 4.30056 4.38003 4.46390 4.54445 4.55451 4.64492 4.65413 4.68543 4.73177 4.81321 4.82872 4.86311 4.90331 4.92609 5.00962 5.09360 5.13245 5.14135 5.21105 5.24628 5.28078 5.41854 5.42266 5.50298 5.65990 5.80018 5.93995 6.31552 6.43610 6.46397 7.10769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.054 3.946 4 H 0.107 0.893 5 C -0.131 4.131 6 C -0.108 4.108 7 H 0.125 0.875 8 C 0.133 3.867 9 N -0.709 5.709 10 C 0.553 3.447 11 O -0.584 6.584 12 C -0.152 4.152 13 C -0.071 4.071 14 C -0.122 4.122 15 C -0.023 4.023 16 C -0.060 4.060 17 C -0.107 4.107 18 C -0.101 4.101 19 C -0.116 4.116 20 C -0.082 4.082 21 O -0.548 6.548 22 Si 0.762 3.238 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.074 4.074 27 C -0.150 4.150 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.416 0.584 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.386 0.614 42 H -0.284 1.284 43 H -0.305 1.305 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.157 0.843 47 H 0.158 0.842 48 H 0.087 0.913 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 4.609 1.402 6.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.004 4.004 4 H 0.125 0.875 5 C -0.169 4.169 6 C -0.126 4.126 7 H 0.143 0.857 8 C 0.009 3.991 9 N -0.361 5.361 10 C 0.342 3.658 11 O -0.466 6.466 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.140 4.140 15 C -0.023 4.023 16 C -0.060 4.060 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.191 4.191 21 O -0.356 6.356 22 Si 0.668 3.332 23 C -0.137 4.137 24 C -0.125 4.125 25 C -0.138 4.138 26 C -0.092 4.092 27 C -0.188 4.188 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.254 0.746 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.235 0.765 42 H -0.211 1.211 43 H -0.233 1.233 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.174 0.826 47 H 0.176 0.824 48 H 0.106 0.894 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.992 4.243 1.164 5.321 hybrid contribution -1.123 -0.432 -0.825 1.458 sum -4.115 3.810 0.340 5.619 Atomic orbital electron populations 1.22932 0.79930 1.03491 1.00832 1.87927 1.21178 1.28727 1.94732 1.23930 0.94237 0.85206 0.97022 0.87541 1.23224 0.95221 0.99877 0.98582 1.22510 0.91843 1.01163 0.97103 0.85743 1.21323 0.95773 0.91383 0.90621 1.45780 1.14777 1.33822 1.41740 1.18609 0.81959 0.84027 0.81233 1.90775 1.51276 1.39942 1.64582 1.19989 0.96781 0.98481 1.00270 1.21264 0.95411 0.97855 0.94516 1.21388 1.00645 0.94342 0.97612 1.19156 0.94367 0.94015 0.94749 1.18938 0.94874 0.95532 0.96648 1.21521 1.00000 0.93850 0.97119 1.21098 0.96164 0.98958 0.95710 1.20462 0.95301 0.97231 0.98661 1.25205 1.04801 1.01913 0.87147 1.86574 1.63048 1.39903 1.46077 0.94108 0.77182 0.76545 0.85399 1.21140 0.99520 0.94782 0.98304 1.21477 0.96098 0.99048 0.95878 1.21474 0.96162 0.99629 0.96486 1.21471 0.99238 0.92453 0.96055 1.23611 0.97244 1.00776 0.97120 0.92939 0.93163 0.89404 0.90178 0.89327 0.92668 0.91826 0.74598 0.85516 0.83389 0.83569 0.84944 0.85576 0.76499 1.21066 1.23331 0.83906 0.83683 0.82569 0.82412 0.89404 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.41 -1.49 10.72 -148.98 -1.60 -3.08 16 3 C 0.05 -0.11 4.31 31.18 0.13 0.03 16 4 H 0.11 -0.63 7.87 -2.39 -0.02 -0.64 16 5 C -0.13 0.33 7.47 31.12 0.23 0.56 16 6 C -0.11 0.56 3.75 -10.27 -0.04 0.52 16 7 H 0.12 -1.20 8.14 -2.39 -0.02 -1.22 16 8 C 0.13 0.02 5.50 86.38 0.47 0.50 16 9 N -0.71 0.52 5.51 -466.10 -2.57 -2.04 16 10 C 0.55 3.61 7.77 86.75 0.67 4.28 16 11 O -0.58 -9.20 16.33 -3.92 -0.06 -9.26 16 12 C -0.15 -0.43 5.88 -20.06 -0.12 -0.55 16 13 C -0.07 -0.27 9.58 22.49 0.22 -0.06 16 14 C -0.12 -0.04 9.41 22.44 0.21 0.18 16 15 C -0.02 0.02 5.88 -20.00 -0.12 -0.10 16 16 C -0.06 0.06 5.88 -20.05 -0.12 -0.05 16 17 C -0.11 0.25 9.43 22.49 0.21 0.47 16 18 C -0.10 0.14 9.59 22.23 0.21 0.35 16 19 C -0.12 0.18 5.40 -19.82 -0.11 0.07 16 20 C -0.08 0.14 2.82 71.24 0.20 0.35 16 21 O -0.55 -0.82 12.77 -148.98 -1.90 -2.72 16 22 Si 0.76 -1.92 29.78 68.60 2.04 0.12 16 23 C -0.12 0.31 8.65 22.24 0.19 0.50 16 24 C -0.11 0.23 9.43 22.49 0.21 0.44 16 25 C -0.12 0.43 9.41 22.44 0.21 0.64 16 26 C -0.07 0.26 9.52 22.49 0.21 0.47 16 27 C -0.15 0.52 7.48 31.18 0.23 0.75 16 28 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.08 0.07 8.10 -2.38 -0.02 0.05 16 32 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.05 0.23 7.88 -2.38 -0.02 0.21 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.42 -3.21 6.49 -92.71 -0.60 -3.81 16 36 H 0.13 0.71 7.64 -2.91 -0.02 0.69 16 37 H 0.15 -0.54 6.19 -2.91 -0.02 -0.56 16 38 H 0.15 -0.99 6.19 -2.91 -0.02 -1.01 16 39 H 0.13 -0.32 8.06 -2.91 -0.02 -0.35 16 40 H 0.13 -0.42 7.96 -2.38 -0.02 -0.44 16 41 H 0.39 -1.46 8.70 -74.06 -0.64 -2.10 16 42 H -0.28 -0.40 7.10 99.48 0.71 0.30 16 43 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 44 H 0.14 -0.86 4.86 -2.91 -0.01 -0.88 16 45 H 0.15 -0.82 6.19 -2.91 -0.02 -0.84 16 46 H 0.16 -1.37 6.19 -2.91 -0.02 -1.39 16 47 H 0.16 -1.67 6.39 -2.91 -0.02 -1.69 16 48 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 49 H 0.07 0.05 7.92 -2.39 -0.02 0.03 16 Total: 0.00 -22.74 400.91 0.06 -22.67 By element: Atomic # 1 Polarization: -16.01 SS G_CDS: -0.21 Total: -16.22 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 4.36 Total: 10.54 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -2.57 Total: -2.04 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -3.56 Total: -15.06 kcal Atomic # 14 Polarization: -1.92 SS G_CDS: 2.04 Total: 0.12 kcal Total: -22.74 0.06 -22.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_13158362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.266 kcal (2) G-P(sol) polarization free energy of solvation -22.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds