Wall clock time and date at job start Sat Mar 6 2021 18:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99829 * 2 1 4 4 H 1.08996 * 112.85098 * 18.80150 * 3 2 1 5 5 C 1.53781 * 113.61242 * 149.99696 * 3 2 1 6 6 C 1.53780 * 87.08109 * 139.98012 * 5 3 2 7 7 H 1.09003 * 113.61563 * 89.19771 * 6 5 3 8 8 C 1.53003 * 113.61490 * 220.02270 * 6 5 3 9 9 N 1.46498 * 109.46817 * 185.00007 * 8 6 5 10 10 C 1.34781 * 119.99960 * 179.97438 * 9 8 6 11 11 O 1.21644 * 119.99522 * 359.97438 * 10 9 8 12 12 C 1.47056 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.35865 * 125.42545 * 180.02562 * 12 10 9 14 14 C 1.41589 * 107.73125 * 179.97438 * 13 12 10 15 15 C 1.40061 * 133.38068 * 180.02562 * 14 13 12 16 16 C 1.36476 * 119.83075 * 179.97438 * 15 14 13 17 17 C 1.38901 * 120.61048 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.67106 * 179.97438 * 17 16 15 19 19 O 1.42907 * 109.46756 * 119.97932 * 18 17 16 20 20 Si 1.86296 * 109.47318 * 359.97438 * 18 17 16 21 21 C 1.37708 * 120.65463 * 359.97438 * 17 16 15 22 22 C 1.39195 * 119.80383 * 0.02562 * 21 17 16 23 23 N 1.37490 * 133.18317 * 180.02562 * 22 21 17 24 24 C 1.53778 * 113.61142 * 247.49167 * 3 2 1 25 25 H 1.09001 * 109.46811 * 60.00415 * 1 2 3 26 26 H 1.09000 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46967 * 300.00408 * 1 2 3 28 28 H 1.09001 * 113.61175 * 25.43166 * 5 3 2 29 29 H 1.08997 * 113.61387 * 254.52910 * 5 3 2 30 30 H 1.08989 * 109.47477 * 64.99722 * 8 6 5 31 31 H 1.09000 * 109.46525 * 304.99440 * 8 6 5 32 32 H 0.96999 * 120.00418 * 359.97438 * 9 8 6 33 33 H 1.08004 * 126.13592 * 359.71694 * 13 12 10 34 34 H 1.07997 * 120.08845 * 359.97438 * 15 14 13 35 35 H 1.07990 * 119.69569 * 180.02562 * 16 15 14 36 36 H 1.09003 * 109.47063 * 239.97629 * 18 17 16 37 37 H 0.96703 * 113.99761 * 300.00037 * 19 18 17 38 38 H 1.48498 * 109.99971 * 179.97438 * 20 18 17 39 39 H 1.48501 * 110.00143 * 301.31773 * 20 18 17 40 40 H 1.07994 * 120.10095 * 180.02562 * 21 17 16 41 41 H 0.96999 * 125.60701 * 359.93686 * 23 22 21 42 42 H 1.09005 * 113.61407 * 105.47055 * 24 3 2 43 43 H 1.08996 * 113.61474 * 334.57135 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0789 0.3237 5 6 3.3755 1.3720 0.7046 6 6 3.8228 2.3182 -0.4221 7 1 3.6236 3.3695 -0.2143 8 6 5.2544 2.0679 -0.9006 9 7 5.6261 3.0886 -1.8835 10 6 6.8509 3.0685 -2.4456 11 8 7.6478 2.2030 -2.1363 12 6 7.2239 4.0927 -3.4327 13 6 8.4231 4.1766 -4.0658 14 6 8.3765 5.2964 -4.9311 15 6 9.2987 5.8655 -5.8184 16 6 8.9552 6.9746 -6.5356 17 6 7.6975 7.5469 -6.3941 18 6 7.3408 8.7719 -7.1962 19 8 6.2115 8.4868 -8.0242 20 14 8.7876 9.2577 -8.2645 21 6 6.7734 7.0060 -5.5283 22 6 7.1002 5.8749 -4.7857 23 7 6.4108 5.1229 -3.8640 24 6 2.7535 1.6488 -1.3017 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.9088 0.4213 0.7139 29 1 3.3383 1.8472 1.6848 30 1 5.3168 1.0815 -1.3598 31 1 5.9351 2.1169 -0.0507 32 1 4.9908 3.7789 -2.1299 33 1 9.2630 3.5113 -3.9299 34 1 10.2791 5.4278 -5.9348 35 1 9.6678 7.4114 -7.2194 36 1 7.0976 9.5911 -6.5195 37 1 6.3566 7.7664 -8.6528 38 1 8.4482 10.4642 -9.0610 39 1 9.9773 9.5260 -7.4172 40 1 5.7980 7.4580 -5.4256 41 1 5.5028 5.2885 -3.5656 42 1 2.2142 2.3476 -1.9412 43 1 3.1167 0.7740 -1.8409 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:28:38 Heat of formation + Delta-G solvation = -23.922821 kcal Electronic energy + Delta-G solvation = -25218.473905 eV Core-core repulsion = 21424.683719 eV Total energy + Delta-G solvation = -3793.790186 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.72066 -40.99181 -40.20521 -38.94596 -37.51004 -36.87726 -35.48851 -33.28870 -31.38672 -30.40979 -29.41490 -27.57181 -26.79808 -26.50969 -24.46356 -23.37535 -22.94557 -21.99395 -21.42819 -20.60194 -19.55624 -18.40579 -17.90259 -17.76634 -16.94510 -16.86657 -16.79279 -16.50869 -16.18728 -16.04944 -15.70043 -15.54979 -15.40061 -15.05966 -14.80118 -14.64573 -14.50393 -14.20937 -14.10216 -13.62340 -13.45831 -13.13805 -12.92693 -12.58614 -12.51655 -12.49267 -12.05419 -12.02199 -11.78054 -11.63934 -11.48807 -11.35873 -10.97715 -10.45537 -10.43043 -10.33337 -9.33686 -8.84220 -4.93668 -0.38841 0.52026 0.92734 1.35249 1.68554 1.72648 1.93325 2.02638 2.15110 2.76809 2.85726 3.39398 3.48543 3.53820 3.66026 3.70081 3.73220 3.77593 3.80443 4.03526 4.06683 4.24779 4.25469 4.29088 4.43920 4.44610 4.50034 4.52413 4.59670 4.63026 4.70292 4.78686 4.80650 4.84358 4.87515 4.96913 4.98447 5.06701 5.15211 5.30712 5.36395 5.40072 5.52793 5.56886 5.97083 6.22117 6.29177 6.40963 6.79860 6.91043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.053 3.947 4 H 0.105 0.895 5 C -0.130 4.130 6 C -0.108 4.108 7 H 0.123 0.877 8 C 0.133 3.867 9 N -0.709 5.709 10 C 0.583 3.417 11 O -0.562 6.562 12 C 0.010 3.990 13 C -0.118 4.118 14 C -0.135 4.135 15 C -0.058 4.058 16 C -0.148 4.148 17 C -0.089 4.089 18 C -0.070 4.070 19 O -0.555 6.555 20 Si 0.776 3.224 21 C -0.110 4.110 22 C 0.107 3.893 23 N -0.564 5.564 24 C -0.150 4.150 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.412 0.588 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.110 0.890 37 H 0.396 0.604 38 H -0.302 1.302 39 H -0.286 1.286 40 H 0.135 0.865 41 H 0.431 0.569 42 H 0.085 0.915 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 2.136 -1.078 4.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.004 4.004 4 H 0.123 0.877 5 C -0.168 4.168 6 C -0.127 4.127 7 H 0.141 0.859 8 C 0.009 3.991 9 N -0.361 5.361 10 C 0.370 3.630 11 O -0.441 6.441 12 C -0.099 4.099 13 C -0.145 4.145 14 C -0.140 4.140 15 C -0.076 4.076 16 C -0.166 4.166 17 C -0.091 4.091 18 C -0.180 4.180 19 O -0.363 6.363 20 Si 0.683 3.317 21 C -0.130 4.130 22 C -0.003 4.003 23 N -0.170 5.170 24 C -0.188 4.188 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.249 0.751 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.127 0.873 37 H 0.246 0.754 38 H -0.230 1.230 39 H -0.213 1.213 40 H 0.153 0.847 41 H 0.272 0.728 42 H 0.104 0.896 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.511 2.376 -0.573 4.278 hybrid contribution -1.170 0.431 0.749 1.454 sum -4.681 2.807 0.176 5.461 Atomic orbital electron populations 1.22932 0.79950 1.03523 1.00783 1.87930 1.21143 1.28653 1.94734 1.23892 0.94268 0.85231 0.97056 0.87698 1.23226 0.95166 0.99936 0.98500 1.22513 0.91877 1.01104 0.97196 0.85904 1.21394 0.95713 0.90856 0.91091 1.45745 1.14344 1.32415 1.43568 1.17318 0.82299 0.83310 0.80051 1.90864 1.51733 1.38226 1.63263 1.19952 0.93419 0.93679 1.02893 1.21109 0.97211 0.98709 0.97498 1.18435 0.95218 0.98233 1.02072 1.20637 0.99045 0.94715 0.93239 1.20696 0.96364 0.97451 1.02092 1.20163 0.94032 0.97421 0.97452 1.25154 0.99267 0.96678 0.96946 1.86464 1.37600 1.59175 1.53052 0.93560 0.73694 0.83167 0.81271 1.19984 1.00989 0.94675 0.97357 1.18451 0.92409 0.95246 0.94205 1.41772 1.15440 1.23505 1.36264 1.23592 0.97240 1.00807 0.97122 0.93211 0.89343 0.92995 0.89926 0.89385 0.92035 0.91332 0.75140 0.82744 0.83474 0.83605 0.87301 0.75416 1.23040 1.21277 0.84671 0.72792 0.89649 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.41 -1.25 10.71 -148.98 -1.60 -2.84 16 3 C 0.05 -0.14 4.31 31.12 0.13 0.00 16 4 H 0.11 -0.65 7.87 -2.39 -0.02 -0.67 16 5 C -0.13 0.44 7.47 31.12 0.23 0.68 16 6 C -0.11 0.68 3.76 -10.27 -0.04 0.64 16 7 H 0.12 -1.29 8.14 -2.39 -0.02 -1.31 16 8 C 0.13 -0.21 5.51 86.38 0.48 0.27 16 9 N -0.71 1.68 5.55 -466.74 -2.59 -0.92 16 10 C 0.58 2.98 7.80 86.56 0.68 3.65 16 11 O -0.56 -7.74 16.84 -4.17 -0.07 -7.81 16 12 C 0.01 0.03 6.96 39.91 0.28 0.31 16 13 C -0.12 -0.60 10.53 22.55 0.24 -0.37 16 14 C -0.14 -0.47 6.16 -21.36 -0.13 -0.61 16 15 C -0.06 -0.01 10.06 22.30 0.22 0.21 16 16 C -0.15 0.25 8.59 22.02 0.19 0.44 16 17 C -0.09 0.09 5.40 -19.83 -0.11 -0.02 16 18 C -0.07 0.14 2.81 71.24 0.20 0.34 16 19 O -0.55 0.86 12.76 -148.98 -1.90 -1.04 16 20 Si 0.78 -2.42 29.75 68.60 2.04 -0.38 16 21 C -0.11 0.01 9.61 22.37 0.22 0.23 16 22 C 0.11 0.16 7.25 39.13 0.28 0.45 16 23 N -0.56 1.03 6.07 -177.18 -1.08 -0.05 16 24 C -0.15 0.65 7.46 31.12 0.23 0.88 16 25 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.08 -0.03 8.10 -2.39 -0.02 -0.05 16 29 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.06 0.12 7.84 -2.39 -0.02 0.10 16 31 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.41 -3.73 7.53 -92.71 -0.70 -4.42 16 33 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.15 -0.55 8.06 -2.91 -0.02 -0.57 16 35 H 0.15 -0.85 4.82 -2.92 -0.01 -0.87 16 36 H 0.11 -0.13 7.96 -2.39 -0.02 -0.15 16 37 H 0.40 -3.65 8.70 -74.05 -0.64 -4.30 16 38 H -0.30 -1.40 7.11 99.48 0.71 -0.69 16 39 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 40 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 41 H 0.43 -3.78 8.12 -92.71 -0.75 -4.53 16 42 H 0.08 -0.61 8.14 -2.38 -0.02 -0.63 16 43 H 0.08 -0.03 7.90 -2.39 -0.02 -0.05 16 Total: 0.00 -21.62 360.44 -1.86 -23.48 By element: Atomic # 1 Polarization: -17.73 SS G_CDS: -1.00 Total: -18.73 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 4.33 Total: 8.27 kcal Atomic # 7 Polarization: 2.70 SS G_CDS: -3.67 Total: -0.97 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -3.57 Total: -11.69 kcal Atomic # 14 Polarization: -2.42 SS G_CDS: 2.04 Total: -0.38 kcal Total: -21.62 -1.86 -23.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.439 kcal (2) G-P(sol) polarization free energy of solvation -21.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds