Wall clock time and date at job start Sat Mar 6 2021 18:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00062 * 2 1 4 4 H 1.09000 * 112.91058 * 18.74736 * 3 2 1 5 5 C 1.53786 * 113.61586 * 149.99622 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02292 * 5 3 2 7 7 H 1.08999 * 113.61567 * 89.07405 * 6 5 3 8 8 C 1.52995 * 113.61503 * 219.89414 * 6 5 3 9 9 N 1.46505 * 109.47283 * 185.00012 * 8 6 5 10 10 C 1.34772 * 119.99813 * 180.02562 * 9 8 6 11 11 O 1.21575 * 120.00529 * 359.97438 * 10 9 8 12 12 C 1.47659 * 119.99806 * 179.97438 * 10 9 8 13 13 C 1.40171 * 119.97228 * 359.72387 * 12 10 9 14 14 C 1.36345 * 120.66961 * 179.79331 * 13 12 10 15 15 C 1.39328 * 120.23695 * 0.44086 * 14 13 12 16 16 N 1.37401 * 133.25518 * 179.79126 * 15 14 13 17 17 C 1.36864 * 109.98302 * 180.02562 * 16 15 14 18 18 C 1.34193 * 109.96650 * 359.97438 * 17 16 15 19 19 C 1.50699 * 126.53529 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47066 * 254.99619 * 19 18 17 21 21 Si 1.86292 * 109.47432 * 15.00159 * 19 18 17 22 22 C 1.40912 * 119.64064 * 359.81797 * 15 14 13 23 23 C 1.39180 * 119.97501 * 179.97438 * 12 10 9 24 24 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 25 25 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47037 * 300.00188 * 1 2 3 27 27 H 1.09003 * 109.46699 * 60.00030 * 1 2 3 28 28 H 1.09002 * 113.61357 * 25.43209 * 5 3 2 29 29 H 1.09002 * 113.61608 * 254.61371 * 5 3 2 30 30 H 1.09000 * 109.47188 * 305.00387 * 8 6 5 31 31 H 1.09001 * 109.47254 * 65.00150 * 8 6 5 32 32 H 0.97001 * 119.99791 * 0.02562 * 9 8 6 33 33 H 1.08004 * 119.66377 * 359.97438 * 13 12 10 34 34 H 1.08004 * 119.88382 * 180.26116 * 14 13 12 35 35 H 0.97001 * 125.00691 * 0.02562 * 16 15 14 36 36 H 1.08000 * 125.01254 * 180.02562 * 17 16 15 37 37 H 1.09000 * 109.47098 * 135.00341 * 19 18 17 38 38 H 0.96697 * 114.00152 * 180.02562 * 20 19 18 39 39 H 1.48505 * 110.00089 * 299.99832 * 21 19 18 40 40 H 1.48495 * 110.00394 * 61.31892 * 21 19 18 41 41 H 1.08001 * 120.30477 * 359.95435 * 23 12 10 42 42 H 1.09005 * 113.61471 * 139.98321 * 24 6 5 43 43 H 1.08996 * 113.61178 * 270.79663 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3227 5 6 3.3756 1.3718 0.7046 6 6 3.8247 2.3191 -0.4205 7 1 3.6238 3.3701 -0.2126 8 6 5.2577 2.0707 -0.8953 9 7 5.6310 3.0923 -1.8768 10 6 6.8569 3.0731 -2.4364 11 8 7.6532 2.2084 -2.1263 12 6 7.2329 4.1024 -3.4261 13 6 6.3123 5.0957 -3.7875 14 6 6.6459 6.0555 -4.6967 15 6 7.9082 6.0547 -5.2866 16 7 8.5149 6.8677 -6.2133 17 6 9.7868 6.4270 -6.4607 18 6 10.0465 5.3380 -5.7207 19 6 11.3324 4.5525 -5.7011 20 8 11.1540 3.3287 -6.4170 21 14 12.6830 5.5518 -6.5060 22 6 8.8408 5.0583 -4.9357 23 6 8.4993 4.0824 -4.0032 24 6 2.7569 1.6507 -1.3025 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.9088 0.4212 0.7139 29 1 3.3381 1.8458 1.6855 30 1 5.9363 2.1199 -0.0437 31 1 5.3224 1.0845 -1.3549 32 1 4.9957 3.7825 -2.1240 33 1 5.3298 5.1027 -3.3390 34 1 5.9282 6.8174 -4.9628 35 1 8.1025 7.6401 -6.6308 36 1 10.4795 6.8882 -7.1491 37 1 11.6084 4.3331 -4.6697 38 1 11.9433 2.7708 -6.4450 39 1 12.3189 5.8575 -7.9129 40 1 12.9002 6.8126 -5.7521 41 1 9.2106 3.3170 -3.7301 42 1 2.2186 2.3501 -1.9422 43 1 3.1214 0.7772 -1.8430 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_13287722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:28:48 Heat of formation + Delta-G solvation = -24.100915 kcal Electronic energy + Delta-G solvation = -25427.741671 eV Core-core repulsion = 21633.943762 eV Total energy + Delta-G solvation = -3793.797909 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.56925 -41.09483 -40.25155 -37.94772 -37.55550 -37.37346 -35.36763 -33.46483 -31.27881 -30.73329 -28.97132 -27.40458 -26.66158 -26.47792 -24.81518 -23.57820 -23.13308 -21.72428 -20.84425 -20.37607 -19.16294 -18.65546 -18.34270 -17.78820 -17.31787 -17.08831 -16.65789 -16.42176 -16.02015 -15.81182 -15.73491 -15.42874 -15.15613 -15.05951 -14.85951 -14.82195 -14.25872 -14.17125 -13.87683 -13.59636 -13.53505 -13.42079 -12.90293 -12.74975 -12.64057 -12.43640 -12.08646 -11.97645 -11.91966 -11.70978 -11.41790 -11.08707 -10.90659 -10.41333 -10.21122 -10.20419 -9.44066 -8.93390 -4.92999 -0.23362 0.10046 1.32706 1.33996 1.70905 1.79475 1.93446 1.96816 2.07027 2.81488 2.89200 3.44384 3.49951 3.56905 3.61341 3.65680 3.76211 3.82960 3.84636 3.98467 4.07778 4.12828 4.18747 4.30771 4.33250 4.43927 4.47416 4.49011 4.54975 4.66235 4.70915 4.75876 4.82471 4.83932 4.87126 4.92795 5.02127 5.14483 5.18101 5.26091 5.26648 5.37202 5.44674 5.46453 5.86931 6.32451 6.42055 6.48096 6.94549 7.15213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.054 3.946 4 H 0.108 0.892 5 C -0.131 4.131 6 C -0.107 4.107 7 H 0.126 0.874 8 C 0.133 3.867 9 N -0.708 5.708 10 C 0.559 3.441 11 O -0.588 6.588 12 C -0.177 4.177 13 C -0.061 4.061 14 C -0.126 4.126 15 C 0.110 3.890 16 N -0.573 5.573 17 C 0.058 3.942 18 C -0.180 4.180 19 C -0.060 4.060 20 O -0.570 6.570 21 Si 0.791 3.209 22 C -0.131 4.131 23 C -0.016 4.016 24 C -0.150 4.150 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.416 0.584 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.438 0.562 36 H 0.188 0.812 37 H 0.070 0.930 38 H 0.399 0.601 39 H -0.281 1.281 40 H -0.286 1.286 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 6.557 -1.180 7.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.003 4.003 4 H 0.125 0.875 5 C -0.169 4.169 6 C -0.126 4.126 7 H 0.143 0.857 8 C 0.009 3.991 9 N -0.361 5.361 10 C 0.348 3.652 11 O -0.470 6.470 12 C -0.181 4.181 13 C -0.081 4.081 14 C -0.146 4.146 15 C 0.001 3.999 16 N -0.177 5.177 17 C -0.070 4.070 18 C -0.187 4.187 19 C -0.169 4.169 20 O -0.379 6.379 21 Si 0.693 3.307 22 C -0.135 4.135 23 C -0.036 4.036 24 C -0.188 4.188 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.254 0.746 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.279 0.721 36 H 0.205 0.795 37 H 0.088 0.912 38 H 0.249 0.751 39 H -0.207 1.207 40 H -0.213 1.213 41 H 0.133 0.867 42 H 0.106 0.894 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.694 6.870 -1.480 7.526 hybrid contribution -0.893 0.349 0.011 0.959 sum -3.587 7.219 -1.469 8.194 Atomic orbital electron populations 1.22934 0.79936 1.03489 1.00827 1.87927 1.21176 1.28713 1.94720 1.23933 0.94192 0.85208 0.96977 0.87464 1.23226 0.95241 0.99864 0.98579 1.22504 0.91751 1.01188 0.97118 0.85654 1.21318 0.95666 0.90906 0.91161 1.45723 1.14532 1.32290 1.43520 1.18434 0.81975 0.84096 0.80666 1.90763 1.52107 1.39815 1.64304 1.19604 0.96169 0.99706 1.02630 1.20935 0.99279 0.91915 0.95989 1.20080 0.93459 1.02003 0.99052 1.18725 0.95191 0.92398 0.93619 1.41680 1.11812 1.27535 1.36629 1.21877 0.87290 0.97198 1.00597 1.20110 0.95809 0.99697 1.03103 1.24437 1.00320 0.91394 1.00746 1.86477 1.42714 1.32371 1.76359 0.93737 0.82472 0.78419 0.76032 1.19179 0.95087 0.98017 1.01248 1.20608 0.95326 0.95420 0.92223 1.23629 0.97238 1.00760 0.97133 0.89400 0.92929 0.93172 0.90227 0.89336 0.91907 0.92780 0.74566 0.81658 0.81842 0.72107 0.79532 0.91224 0.75078 1.20720 1.21313 0.86693 0.89429 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.41 -1.77 10.72 -148.98 -1.60 -3.37 16 3 C 0.05 -0.06 4.32 31.21 0.13 0.07 16 4 H 0.11 -0.56 7.87 -2.39 -0.02 -0.58 16 5 C -0.13 0.20 7.46 31.12 0.23 0.44 16 6 C -0.11 0.43 3.75 -10.27 -0.04 0.39 16 7 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 8 C 0.13 0.25 5.51 86.38 0.48 0.73 16 9 N -0.71 -1.00 5.51 -466.15 -2.57 -3.57 16 10 C 0.56 5.51 7.76 86.73 0.67 6.18 16 11 O -0.59 -11.30 16.33 -3.95 -0.06 -11.36 16 12 C -0.18 -1.31 5.87 -20.09 -0.12 -1.43 16 13 C -0.06 0.03 9.46 22.30 0.21 0.24 16 14 C -0.13 0.14 10.00 22.09 0.22 0.36 16 15 C 0.11 0.44 7.27 39.19 0.28 0.73 16 16 N -0.57 0.09 6.05 -187.48 -1.13 -1.04 16 17 C 0.06 0.17 10.43 82.98 0.87 1.03 16 18 C -0.18 -1.38 5.61 -18.61 -0.10 -1.48 16 19 C -0.06 -0.22 3.05 71.24 0.22 0.00 16 20 O -0.57 -2.79 12.86 -148.98 -1.92 -4.70 16 21 Si 0.79 -1.71 30.80 68.60 2.11 0.40 16 22 C -0.13 -1.27 6.34 -20.21 -0.13 -1.40 16 23 C -0.02 -0.19 9.64 22.73 0.22 0.03 16 24 C -0.15 0.36 7.48 31.21 0.23 0.59 16 25 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.05 -0.19 8.14 -2.39 -0.02 -0.20 16 27 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.08 0.15 8.10 -2.39 -0.02 0.13 16 29 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.05 0.33 7.85 -2.39 -0.02 0.31 16 32 H 0.42 -2.48 6.47 -92.71 -0.60 -3.08 16 33 H 0.17 -1.47 6.36 -2.91 -0.02 -1.48 16 34 H 0.16 -1.36 8.06 -2.91 -0.02 -1.39 16 35 H 0.44 -3.36 8.96 -92.71 -0.83 -4.19 16 36 H 0.19 -0.32 6.30 -2.91 -0.02 -0.34 16 37 H 0.07 0.19 7.96 -2.39 -0.02 0.17 16 38 H 0.40 -2.31 8.74 -74.06 -0.65 -2.96 16 39 H -0.28 -0.63 7.04 99.48 0.70 0.07 16 40 H -0.29 -0.79 7.11 99.48 0.71 -0.08 16 41 H 0.12 1.71 7.64 -2.91 -0.02 1.69 16 42 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16 43 H 0.07 0.14 7.90 -2.39 -0.02 0.13 16 Total: 0.00 -28.33 360.45 -1.54 -29.87 By element: Atomic # 1 Polarization: -12.94 SS G_CDS: -0.98 Total: -13.92 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 4.61 Total: 7.68 kcal Atomic # 7 Polarization: -0.91 SS G_CDS: -3.70 Total: -4.61 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -3.58 Total: -19.43 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: 2.11 Total: 0.40 kcal Total: -28.33 -1.54 -29.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_13287722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.773 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds