Wall clock time and date at job start Sat Mar 6 2021 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00116 * 2 1 4 4 H 1.09005 * 112.91037 * 341.25415 * 3 2 1 5 5 C 1.53779 * 113.61345 * 112.50524 * 3 2 1 6 6 C 1.53783 * 87.08516 * 139.98142 * 5 3 2 7 7 H 1.08998 * 113.68933 * 89.12740 * 6 5 3 8 8 C 1.53002 * 113.61540 * 220.02160 * 6 5 3 9 9 N 1.46503 * 109.46530 * 272.49309 * 8 6 5 10 10 C 1.34780 * 119.99518 * 180.02562 * 9 8 6 11 11 O 1.21518 * 120.00007 * 359.97438 * 10 9 8 12 12 C 1.48167 * 119.99989 * 180.02562 * 10 9 8 13 13 N 1.32718 * 119.72206 * 0.02562 * 12 10 9 14 14 C 1.31529 * 121.64184 * 179.75459 * 13 12 10 15 15 C 1.38554 * 120.89874 * 0.49375 * 14 13 12 16 16 C 1.50707 * 120.31844 * 179.77552 * 15 14 13 17 17 O 1.42903 * 109.46442 * 244.71883 * 16 15 14 18 18 Si 1.86293 * 109.47256 * 4.71450 * 16 15 14 19 19 C 1.38628 * 119.35734 * 359.49297 * 15 14 13 20 20 C 1.38587 * 118.48571 * 0.25791 * 19 15 14 21 21 C 1.53781 * 87.07622 * 334.56688 * 6 5 3 22 22 H 1.09002 * 109.46852 * 299.99658 * 1 2 3 23 23 H 1.08997 * 109.46946 * 59.99674 * 1 2 3 24 24 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 25 25 H 1.09000 * 113.61664 * 25.43030 * 5 3 2 26 26 H 1.09003 * 113.61594 * 254.53340 * 5 3 2 27 27 H 1.08999 * 109.46998 * 152.49531 * 8 6 5 28 28 H 1.08996 * 109.47067 * 32.49220 * 8 6 5 29 29 H 0.96996 * 120.00658 * 0.02562 * 9 8 6 30 30 H 1.07999 * 119.54774 * 180.23823 * 14 13 12 31 31 H 1.08999 * 109.47345 * 124.71953 * 16 15 14 32 32 H 0.96700 * 114.00311 * 60.00230 * 17 16 15 33 33 H 1.48501 * 109.99918 * 58.68485 * 18 16 15 34 34 H 1.48506 * 109.99973 * 180.02562 * 18 16 15 35 35 H 1.08002 * 120.75521 * 180.27548 * 19 15 14 36 36 H 1.08001 * 120.47168 * 179.97438 * 20 19 15 37 37 H 1.09004 * 113.61228 * 139.97871 * 21 6 5 38 38 H 1.09003 * 113.61721 * 270.79774 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0798 -0.3227 5 6 2.7535 1.6487 1.3017 6 6 3.8228 2.3180 0.4222 7 1 3.6237 3.3693 0.2144 8 6 5.2544 2.0678 0.9007 9 7 5.6261 3.0884 1.8837 10 6 6.8510 3.0682 2.4457 11 8 7.6468 2.2032 2.1374 12 6 7.2268 4.1001 3.4403 13 7 6.3529 5.0415 3.7741 14 6 6.6449 5.9727 4.6559 15 6 7.8886 6.0106 5.2654 16 6 8.2110 7.0864 6.2703 17 8 9.2566 7.9164 5.7605 18 14 6.6930 8.1208 6.5812 19 6 8.8315 5.0458 4.9462 20 6 8.4945 4.0739 4.0175 21 6 3.3756 1.3718 -0.7045 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.1167 0.7738 1.8410 26 1 2.2141 2.3475 1.9412 27 1 5.9353 2.1167 0.0509 28 1 5.3168 1.0812 1.3599 29 1 4.9908 3.7787 2.1301 30 1 5.9065 6.7204 4.9053 31 1 8.5347 6.6264 7.2039 32 1 9.0376 8.3589 4.9290 33 1 5.5882 7.2638 7.0815 34 1 6.9980 9.1858 7.5701 35 1 9.8064 5.0512 5.4109 36 1 9.2046 3.3072 3.7448 37 1 3.3384 1.8471 -1.6848 38 1 3.9099 0.4217 -0.7147 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12345242_13287726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:28:52 Heat of formation + Delta-G solvation = -45.620024 kcal Electronic energy + Delta-G solvation = -20924.684044 eV Core-core repulsion = 17541.942897 eV Total energy + Delta-G solvation = -3382.741147 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.86716 -40.79245 -39.90883 -37.98693 -37.43713 -35.31472 -33.81154 -32.99360 -29.60065 -27.83936 -27.16183 -26.70173 -25.06537 -24.05600 -23.08700 -21.81404 -20.73904 -19.23758 -18.65967 -17.93266 -17.58661 -16.81392 -16.76637 -16.60709 -16.44183 -16.29254 -16.02631 -15.91628 -15.44836 -14.95424 -14.67601 -14.40730 -14.26010 -13.97208 -13.62165 -13.59884 -13.47066 -12.92201 -12.66291 -12.53329 -12.19532 -12.02951 -11.78162 -11.48561 -11.30332 -11.09142 -10.69854 -10.64245 -10.45218 -10.34245 -10.02116 -5.20151 -0.58332 0.03504 1.07862 1.47485 1.65181 1.83321 2.01388 2.69704 2.81444 2.93064 3.23877 3.40661 3.41863 3.50680 3.64626 3.71997 3.74234 3.77990 3.90560 4.03566 4.12524 4.22802 4.27929 4.39140 4.44216 4.50882 4.63972 4.66527 4.75272 4.76804 4.79197 4.85725 4.93424 4.95812 5.08425 5.23040 5.33275 5.42987 6.25382 6.31969 6.36564 6.62356 7.15492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.124 4.124 7 H 0.101 0.899 8 C 0.130 3.870 9 N -0.709 5.709 10 C 0.570 3.430 11 O -0.529 6.529 12 C 0.082 3.918 13 N -0.453 5.453 14 C 0.104 3.896 15 C -0.151 4.151 16 C -0.067 4.067 17 O -0.536 6.536 18 Si 0.686 3.314 19 C -0.053 4.053 20 C -0.108 4.108 21 C -0.126 4.126 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.412 0.588 30 H 0.164 0.836 31 H 0.120 0.880 32 H 0.381 0.619 33 H -0.253 1.253 34 H -0.249 1.249 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.077 0.923 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 4.130 -0.989 5.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.002 3.998 4 H 0.107 0.893 5 C -0.189 4.189 6 C -0.143 4.143 7 H 0.119 0.881 8 C 0.007 3.993 9 N -0.360 5.360 10 C 0.355 3.645 11 O -0.405 6.405 12 C -0.056 4.056 13 N -0.164 5.164 14 C -0.055 4.055 15 C -0.153 4.153 16 C -0.178 4.178 17 O -0.341 6.341 18 Si 0.587 3.413 19 C -0.079 4.079 20 C -0.129 4.129 21 C -0.164 4.164 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.248 0.752 30 H 0.181 0.819 31 H 0.137 0.863 32 H 0.229 0.771 33 H -0.177 1.177 34 H -0.173 1.173 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.096 0.904 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.951 3.342 -0.524 5.202 hybrid contribution 0.633 0.090 0.732 0.972 sum -3.318 3.432 0.208 4.778 Atomic orbital electron populations 1.22813 0.80961 1.02999 0.99986 1.87961 1.19829 1.27195 1.94553 1.23695 0.93904 0.85517 0.96677 0.89324 1.23631 0.97096 1.01032 0.97137 1.22569 0.93592 1.00207 0.97922 0.88059 1.21419 0.94642 0.91609 0.91652 1.45816 1.15184 1.32002 1.43025 1.17848 0.82245 0.83847 0.80575 1.90827 1.50629 1.36903 1.62119 1.21178 0.91800 0.94918 0.97720 1.67509 1.34025 1.02106 1.12801 1.22589 0.94551 0.96059 0.92330 1.21653 0.95548 0.98528 0.99614 1.25053 1.01896 0.93698 0.97175 1.86542 1.40363 1.63112 1.44096 0.94826 0.76006 0.81788 0.88676 1.21565 0.99785 0.91698 0.94804 1.22235 0.96658 0.98994 0.94997 1.23212 0.95329 1.00209 0.97679 0.93976 0.93907 0.89548 0.88847 0.90981 0.90744 0.90738 0.75190 0.81930 0.86253 0.77134 1.17715 1.17341 0.83481 0.82947 0.90393 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 2 O -0.38 -0.68 10.71 -35.23 -0.38 -1.06 16 3 C 0.06 -0.03 4.31 -25.92 -0.11 -0.14 16 4 H 0.09 -0.16 7.87 -51.93 -0.41 -0.57 16 5 C -0.15 0.15 7.46 -25.92 -0.19 -0.04 16 6 C -0.12 0.22 3.76 -89.80 -0.34 -0.12 16 7 H 0.10 -0.29 8.14 -51.93 -0.42 -0.72 16 8 C 0.13 0.00 5.51 -4.04 -0.02 -0.02 16 9 N -0.71 -0.42 5.55 -61.14 -0.34 -0.76 16 10 C 0.57 1.76 7.81 -12.18 -0.10 1.66 16 11 O -0.53 -3.26 16.32 5.35 0.09 -3.17 16 12 C 0.08 0.15 6.75 -83.01 -0.56 -0.41 16 13 N -0.45 -0.34 9.54 -9.80 -0.09 -0.43 16 14 C 0.10 -0.11 9.84 -17.56 -0.17 -0.28 16 15 C -0.15 0.18 5.37 -104.36 -0.56 -0.38 16 16 C -0.07 0.13 2.82 36.01 0.10 0.23 16 17 O -0.54 0.75 12.84 -35.23 -0.45 0.30 16 18 Si 0.69 -1.88 29.83 -169.99 -5.07 -6.95 16 19 C -0.05 0.03 9.83 -39.31 -0.39 -0.36 16 20 C -0.11 -0.10 9.63 -39.05 -0.38 -0.48 16 21 C -0.13 0.14 7.47 -25.92 -0.19 -0.05 16 22 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 23 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 24 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 25 H 0.09 0.02 7.90 -51.93 -0.41 -0.39 16 26 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 27 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.07 0.08 7.84 -51.93 -0.41 -0.33 16 29 H 0.41 -0.38 7.80 -40.82 -0.32 -0.70 16 30 H 0.16 -0.59 4.92 -52.49 -0.26 -0.84 16 31 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 32 H 0.38 -1.98 8.70 45.56 0.40 -1.58 16 33 H -0.25 0.10 7.11 56.52 0.40 0.51 16 34 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 35 H 0.15 -0.27 8.06 -52.49 -0.42 -0.69 16 36 H 0.15 0.10 7.64 -52.49 -0.40 -0.30 16 37 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 38 H 0.10 -0.03 8.10 -51.93 -0.42 -0.45 16 LS Contribution 324.20 15.07 4.89 4.89 Total: 0.00 -7.56 324.20 -8.39 -15.95 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: -5.22 Total: -9.45 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.81 Total: 0.69 kcal Atomic # 7 Polarization: -0.76 SS G_CDS: -0.43 Total: -1.19 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: -0.74 Total: -3.93 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: -5.07 Total: -6.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -7.56 -8.39 -15.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_13287726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.671 kcal (2) G-P(sol) polarization free energy of solvation -7.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds