Wall clock time and date at job start Sat Mar 6 2021 18:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00116 * 2 1 4 4 H 1.09005 * 112.91037 * 341.25415 * 3 2 1 5 5 C 1.53779 * 113.61345 * 112.50524 * 3 2 1 6 6 C 1.53783 * 87.08516 * 139.98142 * 5 3 2 7 7 H 1.08998 * 113.68933 * 89.12740 * 6 5 3 8 8 C 1.53002 * 113.61540 * 220.02160 * 6 5 3 9 9 N 1.46503 * 109.46530 * 272.49309 * 8 6 5 10 10 C 1.34780 * 119.99518 * 180.02562 * 9 8 6 11 11 O 1.21518 * 120.00007 * 359.97438 * 10 9 8 12 12 C 1.48167 * 119.99989 * 180.02562 * 10 9 8 13 13 N 1.32718 * 119.72206 * 0.02562 * 12 10 9 14 14 C 1.31529 * 121.64184 * 179.75459 * 13 12 10 15 15 C 1.38554 * 120.89874 * 0.49375 * 14 13 12 16 16 C 1.50707 * 120.31844 * 179.77552 * 15 14 13 17 17 O 1.42903 * 109.46442 * 244.71883 * 16 15 14 18 18 Si 1.86293 * 109.47256 * 4.71450 * 16 15 14 19 19 C 1.38628 * 119.35734 * 359.49297 * 15 14 13 20 20 C 1.38587 * 118.48571 * 0.25791 * 19 15 14 21 21 C 1.53781 * 87.07622 * 334.56688 * 6 5 3 22 22 H 1.09002 * 109.46852 * 299.99658 * 1 2 3 23 23 H 1.08997 * 109.46946 * 59.99674 * 1 2 3 24 24 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 25 25 H 1.09000 * 113.61664 * 25.43030 * 5 3 2 26 26 H 1.09003 * 113.61594 * 254.53340 * 5 3 2 27 27 H 1.08999 * 109.46998 * 152.49531 * 8 6 5 28 28 H 1.08996 * 109.47067 * 32.49220 * 8 6 5 29 29 H 0.96996 * 120.00658 * 0.02562 * 9 8 6 30 30 H 1.07999 * 119.54774 * 180.23823 * 14 13 12 31 31 H 1.08999 * 109.47345 * 124.71953 * 16 15 14 32 32 H 0.96700 * 114.00311 * 60.00230 * 17 16 15 33 33 H 1.48501 * 109.99918 * 58.68485 * 18 16 15 34 34 H 1.48506 * 109.99973 * 180.02562 * 18 16 15 35 35 H 1.08002 * 120.75521 * 180.27548 * 19 15 14 36 36 H 1.08001 * 120.47168 * 179.97438 * 20 19 15 37 37 H 1.09004 * 113.61228 * 139.97871 * 21 6 5 38 38 H 1.09003 * 113.61721 * 270.79774 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0798 -0.3227 5 6 2.7535 1.6487 1.3017 6 6 3.8228 2.3180 0.4222 7 1 3.6237 3.3693 0.2144 8 6 5.2544 2.0678 0.9007 9 7 5.6261 3.0884 1.8837 10 6 6.8510 3.0682 2.4457 11 8 7.6468 2.2032 2.1374 12 6 7.2268 4.1001 3.4403 13 7 6.3529 5.0415 3.7741 14 6 6.6449 5.9727 4.6559 15 6 7.8886 6.0106 5.2654 16 6 8.2110 7.0864 6.2703 17 8 9.2566 7.9164 5.7605 18 14 6.6930 8.1208 6.5812 19 6 8.8315 5.0458 4.9462 20 6 8.4945 4.0739 4.0175 21 6 3.3756 1.3718 -0.7045 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.1167 0.7738 1.8410 26 1 2.2141 2.3475 1.9412 27 1 5.9353 2.1167 0.0509 28 1 5.3168 1.0812 1.3599 29 1 4.9908 3.7787 2.1301 30 1 5.9065 6.7204 4.9053 31 1 8.5347 6.6264 7.2039 32 1 9.0376 8.3589 4.9290 33 1 5.5882 7.2638 7.0815 34 1 6.9980 9.1858 7.5701 35 1 9.8064 5.0512 5.4109 36 1 9.2046 3.3072 3.7448 37 1 3.3384 1.8471 -1.6848 38 1 3.9099 0.4217 -0.7147 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_13287726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:28:51 Heat of formation + Delta-G solvation = -46.820181 kcal Electronic energy + Delta-G solvation = -20924.736087 eV Core-core repulsion = 17541.942897 eV Total energy + Delta-G solvation = -3382.793190 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90580 -40.77748 -40.01014 -37.87538 -37.46681 -35.43956 -33.78156 -32.99419 -29.62204 -27.78537 -27.11610 -26.62830 -25.03444 -24.02745 -23.06755 -21.92306 -20.68520 -19.28478 -18.58901 -17.92577 -17.54981 -16.81713 -16.79121 -16.60392 -16.45625 -16.22519 -16.02431 -15.89270 -15.45194 -14.99474 -14.66219 -14.35638 -14.26133 -14.04241 -13.58877 -13.55359 -13.42335 -12.88031 -12.54767 -12.45508 -12.18876 -12.00179 -11.73836 -11.46212 -11.39489 -11.07187 -10.69598 -10.57299 -10.42256 -10.37837 -10.10121 -5.00317 -0.61527 0.06498 1.25206 1.51806 1.64956 1.92910 1.98526 2.65027 2.87452 2.94039 3.42905 3.47225 3.51871 3.57412 3.70914 3.78658 3.82288 3.84607 3.93621 4.11044 4.12681 4.30670 4.40644 4.47091 4.54944 4.56940 4.64063 4.71207 4.81698 4.82778 4.86443 4.88734 4.97617 5.02135 5.13811 5.23466 5.36532 5.41435 6.25053 6.32093 6.59629 6.72012 7.01965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.055 3.945 4 H 0.106 0.894 5 C -0.151 4.151 6 C -0.109 4.109 7 H 0.122 0.878 8 C 0.131 3.869 9 N -0.696 5.696 10 C 0.565 3.435 11 O -0.570 6.570 12 C 0.065 3.935 13 N -0.458 5.458 14 C 0.103 3.897 15 C -0.143 4.143 16 C -0.070 4.070 17 O -0.551 6.551 18 Si 0.776 3.224 19 C -0.054 4.054 20 C -0.117 4.117 21 C -0.128 4.128 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.421 0.579 30 H 0.190 0.810 31 H 0.118 0.882 32 H 0.398 0.602 33 H -0.279 1.279 34 H -0.296 1.296 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.089 0.911 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 5.653 -0.971 7.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.003 4.003 4 H 0.124 0.876 5 C -0.189 4.189 6 C -0.127 4.127 7 H 0.140 0.860 8 C 0.007 3.993 9 N -0.347 5.347 10 C 0.351 3.649 11 O -0.449 6.449 12 C -0.072 4.072 13 N -0.169 5.169 14 C -0.056 4.056 15 C -0.145 4.145 16 C -0.180 4.180 17 O -0.359 6.359 18 Si 0.681 3.319 19 C -0.079 4.079 20 C -0.138 4.138 21 C -0.166 4.166 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.259 0.741 30 H 0.206 0.794 31 H 0.136 0.864 32 H 0.248 0.752 33 H -0.206 1.206 34 H -0.224 1.224 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.108 0.892 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.756 4.871 -0.541 6.830 hybrid contribution 0.881 -0.336 0.792 1.232 sum -3.875 4.536 0.251 5.971 Atomic orbital electron populations 1.22932 0.79970 1.03490 1.00805 1.87924 1.21137 1.28648 1.94726 1.23879 0.94282 0.85218 0.96900 0.87586 1.23589 0.97373 1.00691 0.97215 1.22504 0.91888 1.01109 0.97210 0.86017 1.21416 0.95820 0.90848 0.91176 1.45781 1.14606 1.31951 1.42353 1.18138 0.82430 0.83699 0.80677 1.90795 1.51858 1.38598 1.63665 1.21050 0.92490 0.95417 0.98291 1.67502 1.33797 1.02239 1.13392 1.23030 0.95157 0.95931 0.91509 1.21779 0.95282 0.98247 0.99229 1.25186 1.02433 0.93619 0.96803 1.86514 1.40790 1.63250 1.45335 0.93795 0.73403 0.78001 0.86717 1.21737 1.00553 0.91343 0.94308 1.22277 0.96465 0.99477 0.95585 1.23216 0.95077 0.99860 0.98474 0.93280 0.92904 0.89355 0.90591 0.89860 0.91275 0.92236 0.74116 0.79361 0.86447 0.75206 1.20573 1.22415 0.82261 0.83488 0.89235 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.41 -1.66 10.71 -148.98 -1.60 -3.26 16 3 C 0.05 -0.06 4.31 31.12 0.13 0.07 16 4 H 0.11 -0.52 7.87 -2.38 -0.02 -0.54 16 5 C -0.15 0.29 7.46 31.12 0.23 0.52 16 6 C -0.11 0.41 3.76 -10.27 -0.04 0.37 16 7 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 8 C 0.13 0.14 5.51 86.38 0.48 0.61 16 9 N -0.70 -1.31 5.55 -465.65 -2.58 -3.90 16 10 C 0.57 4.29 7.81 86.88 0.68 4.97 16 11 O -0.57 -8.33 16.32 -3.77 -0.06 -8.39 16 12 C 0.06 0.29 6.75 41.91 0.28 0.57 16 13 N -0.46 -0.49 9.54 -184.91 -1.76 -2.26 16 14 C 0.10 -0.33 9.84 84.81 0.83 0.50 16 15 C -0.14 0.47 5.37 -19.69 -0.11 0.36 16 16 C -0.07 0.36 2.82 71.24 0.20 0.56 16 17 O -0.55 2.21 12.84 -148.98 -1.91 0.30 16 18 Si 0.78 -5.07 29.83 68.60 2.05 -3.03 16 19 C -0.05 0.06 9.83 22.45 0.22 0.28 16 20 C -0.12 -0.33 9.63 22.61 0.22 -0.11 16 21 C -0.13 0.26 7.47 31.12 0.23 0.49 16 22 H 0.05 -0.15 8.14 -2.39 -0.02 -0.16 16 23 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H 0.08 0.14 7.90 -2.39 -0.02 0.12 16 26 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.06 0.25 7.84 -2.39 -0.02 0.24 16 29 H 0.42 -0.86 7.80 -92.71 -0.72 -1.58 16 30 H 0.19 -1.75 4.92 -2.91 -0.01 -1.76 16 31 H 0.12 -0.52 7.96 -2.39 -0.02 -0.54 16 32 H 0.40 -4.76 8.70 -74.06 -0.64 -5.40 16 33 H -0.28 0.54 7.11 99.48 0.71 1.25 16 34 H -0.30 -0.47 7.11 99.48 0.71 0.23 16 35 H 0.16 -0.65 8.06 -2.91 -0.02 -0.67 16 36 H 0.15 0.48 7.64 -2.91 -0.02 0.46 16 37 H 0.09 -0.39 8.14 -2.38 -0.02 -0.41 16 38 H 0.08 0.07 8.10 -2.39 -0.02 0.05 16 Total: 0.00 -18.91 324.20 -1.52 -20.43 By element: Atomic # 1 Polarization: -10.05 SS G_CDS: -0.24 Total: -10.29 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 4.60 Total: 10.40 kcal Atomic # 7 Polarization: -1.81 SS G_CDS: -4.35 Total: -6.16 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -3.57 Total: -11.35 kcal Atomic # 14 Polarization: -5.07 SS G_CDS: 2.05 Total: -3.03 kcal Total: -18.91 -1.52 -20.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_13287726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.391 kcal (2) G-P(sol) polarization free energy of solvation -18.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds