Wall clock time and date at job start Sat Mar 6 2021 18:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00062 * 2 1 4 4 H 1.09000 * 112.91058 * 18.74736 * 3 2 1 5 5 C 1.53786 * 113.61586 * 149.99622 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02292 * 5 3 2 7 7 H 1.08999 * 113.61567 * 89.07405 * 6 5 3 8 8 C 1.52995 * 113.61503 * 219.89414 * 6 5 3 9 9 N 1.46505 * 109.47283 * 185.00012 * 8 6 5 10 10 C 1.34772 * 119.99813 * 180.02562 * 9 8 6 11 11 O 1.21608 * 120.00698 * 359.97438 * 10 9 8 12 12 C 1.47379 * 119.99611 * 180.02562 * 10 9 8 13 13 C 1.36418 * 127.19458 * 180.02562 * 12 10 9 14 14 C 1.50701 * 125.79555 * 359.97438 * 13 12 10 15 15 O 1.33645 * 108.40004 * 179.97438 * 13 12 10 16 16 C 1.34219 * 110.90871 * 0.02562 * 15 13 12 17 17 C 1.50701 * 125.43710 * 179.97438 * 16 15 13 18 18 O 1.42893 * 109.46939 * 244.97486 * 17 16 15 19 19 Si 1.86302 * 109.47189 * 4.97425 * 17 16 15 20 20 C 1.34179 * 109.12237 * 359.70494 * 16 15 13 21 21 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 22 22 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47037 * 300.00188 * 1 2 3 24 24 H 1.09003 * 109.46699 * 60.00030 * 1 2 3 25 25 H 1.09002 * 113.61357 * 25.43209 * 5 3 2 26 26 H 1.09002 * 113.61608 * 254.61371 * 5 3 2 27 27 H 1.09000 * 109.47188 * 305.00387 * 8 6 5 28 28 H 1.09001 * 109.47254 * 65.00150 * 8 6 5 29 29 H 0.97001 * 119.99791 * 0.02562 * 9 8 6 30 30 H 1.09009 * 109.47139 * 90.00585 * 14 13 12 31 31 H 1.09001 * 109.47099 * 209.99879 * 14 13 12 32 32 H 1.08997 * 109.47515 * 329.99852 * 14 13 12 33 33 H 1.09002 * 109.46947 * 124.97219 * 17 16 15 34 34 H 0.96705 * 114.00588 * 60.00447 * 18 17 16 35 35 H 1.48503 * 110.00068 * 179.97438 * 19 17 16 36 36 H 1.48496 * 109.99989 * 301.31915 * 19 17 16 37 37 H 1.07996 * 127.01818 * 180.26884 * 20 16 15 38 38 H 1.09005 * 113.61471 * 139.98321 * 21 6 5 39 39 H 1.08996 * 113.61178 * 270.79663 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3227 5 6 3.3756 1.3718 0.7046 6 6 3.8247 2.3191 -0.4205 7 1 3.6238 3.3701 -0.2126 8 6 5.2577 2.0707 -0.8953 9 7 5.6310 3.0923 -1.8768 10 6 6.8569 3.0731 -2.4364 11 8 7.6535 2.2082 -2.1262 12 6 7.2325 4.1011 -3.4233 13 6 8.4241 4.2207 -4.0768 14 6 9.6132 3.3091 -3.9153 15 8 8.3575 5.2834 -4.8844 16 6 7.1590 5.8805 -4.7925 17 6 6.7323 7.1061 -5.5587 18 8 6.5100 8.1841 -4.6474 19 14 8.0691 7.5799 -6.7668 20 6 6.3993 5.2086 -3.9140 21 6 2.7569 1.6507 -1.3025 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.9088 0.4212 0.7139 26 1 3.3381 1.8458 1.6855 27 1 5.9363 2.1199 -0.0437 28 1 5.3224 1.0845 -1.3549 29 1 4.9957 3.7825 -2.1240 30 1 9.5448 2.4919 -4.6335 31 1 10.5295 3.8724 -4.0923 32 1 9.6257 2.9038 -2.9036 33 1 5.8113 6.8931 -6.1012 34 1 7.2892 8.4284 -4.1294 35 1 7.6603 8.7869 -7.5291 36 1 9.3387 7.8420 -6.0424 37 1 5.3841 5.4364 -3.6246 38 1 2.2186 2.3501 -1.9422 39 1 3.1214 0.7772 -1.8430 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12345242_13308374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:29:05 Heat of formation + Delta-G solvation = -72.051317 kcal Electronic energy + Delta-G solvation = -21872.183941 eV Core-core repulsion = 18363.266506 eV Total energy + Delta-G solvation = -3508.917435 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.72850 -40.90350 -39.97933 -38.20821 -37.44548 -35.24067 -34.06074 -33.11730 -29.89072 -28.93786 -27.49642 -26.76506 -25.73136 -24.27678 -23.21871 -21.96792 -21.15441 -20.27483 -19.00651 -18.02458 -17.76120 -17.66239 -16.82451 -16.82171 -16.53403 -16.33193 -16.03589 -15.88626 -15.72290 -15.20868 -14.63003 -14.23517 -14.17251 -14.04263 -13.91286 -13.83453 -13.59712 -13.48774 -12.97902 -12.92653 -12.83483 -12.54548 -12.10454 -12.02723 -11.78173 -11.49993 -11.02816 -10.86745 -10.71156 -10.46504 -10.05130 -9.55184 -5.02128 0.32542 0.84442 1.09202 1.42449 1.68393 1.88741 2.19692 2.40300 2.80733 3.07849 3.33679 3.40913 3.49689 3.71382 3.72181 3.77402 3.81953 4.03569 4.14131 4.20766 4.25561 4.37941 4.42094 4.42917 4.56622 4.62088 4.65141 4.67804 4.74129 4.76314 4.78995 4.84107 4.93639 5.06701 5.11924 5.21946 5.23583 5.47540 5.91159 6.17936 6.23872 6.52743 7.27490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.088 0.912 5 C -0.126 4.126 6 C -0.125 4.125 7 H 0.099 0.901 8 C 0.134 3.866 9 N -0.723 5.723 10 C 0.591 3.409 11 O -0.540 6.540 12 C -0.253 4.253 13 C 0.095 3.905 14 C -0.087 4.087 15 O -0.168 6.168 16 C -0.055 4.055 17 C -0.034 4.034 18 O -0.522 6.522 19 Si 0.701 3.299 20 C -0.147 4.147 21 C -0.151 4.151 22 H 0.086 0.914 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.401 0.599 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.381 0.619 35 H -0.249 1.249 36 H -0.256 1.256 37 H 0.157 0.843 38 H 0.070 0.930 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 1.273 -1.219 2.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.002 3.998 4 H 0.106 0.894 5 C -0.164 4.164 6 C -0.144 4.144 7 H 0.117 0.883 8 C 0.010 3.990 9 N -0.374 5.374 10 C 0.380 3.620 11 O -0.418 6.418 12 C -0.257 4.257 13 C 0.042 3.958 14 C -0.143 4.143 15 O -0.066 6.066 16 C -0.104 4.104 17 C -0.143 4.143 18 O -0.328 6.328 19 Si 0.600 3.400 20 C -0.167 4.167 21 C -0.188 4.188 22 H 0.105 0.895 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.235 0.765 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.155 0.845 34 H 0.229 0.771 35 H -0.173 1.173 36 H -0.180 1.180 37 H 0.175 0.825 38 H 0.089 0.911 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.554 1.175 -1.670 2.566 hybrid contribution -0.803 1.050 1.116 1.730 sum -2.357 2.225 -0.554 3.288 Atomic orbital electron populations 1.22816 0.80941 1.03024 0.99983 1.87960 1.19842 1.27152 1.94537 1.23737 0.93892 0.85521 0.96661 0.89366 1.23207 0.95329 1.00220 0.97672 1.22564 0.93762 1.00056 0.97974 0.88282 1.21340 0.94332 0.91624 0.91665 1.45758 1.15183 1.32202 1.44297 1.17157 0.81644 0.83437 0.79793 1.90781 1.50376 1.37703 1.62987 1.21131 0.96082 1.01856 1.06672 1.22924 0.96870 0.87071 0.88925 1.20706 0.91569 0.96044 1.05949 1.83681 1.34222 1.35317 1.53334 1.22544 0.84195 0.99636 1.03977 1.24353 1.10881 0.82467 0.96641 1.86657 1.39978 1.50416 1.55773 0.94366 0.76024 0.86483 0.83097 1.22577 1.00618 0.94691 0.98804 1.23671 0.97043 1.01035 0.97090 0.89511 0.93924 0.93964 0.88531 0.90449 0.90966 0.90843 0.76490 0.88801 0.90066 0.87104 0.84503 0.77074 1.17285 1.17962 0.82494 0.91093 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 2 O -0.38 -0.67 10.72 -35.23 -0.38 -1.05 16 3 C 0.06 -0.03 4.32 -25.77 -0.11 -0.14 16 4 H 0.09 -0.16 7.87 -51.93 -0.41 -0.57 16 5 C -0.13 0.13 7.46 -25.92 -0.19 -0.06 16 6 C -0.12 0.23 3.75 -89.81 -0.34 -0.11 16 7 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 8 C 0.13 0.00 5.51 -4.04 -0.02 -0.03 16 9 N -0.72 -0.19 5.55 -61.40 -0.34 -0.53 16 10 C 0.59 1.79 7.81 -12.54 -0.10 1.69 16 11 O -0.54 -3.19 14.84 5.27 0.08 -3.11 16 12 C -0.25 -0.52 6.31 -103.27 -0.65 -1.17 16 13 C 0.10 0.17 7.37 -34.96 -0.26 -0.09 16 14 C -0.09 0.00 9.89 36.01 0.36 0.35 16 15 O -0.17 -0.21 8.90 7.66 0.07 -0.15 16 16 C -0.06 -0.02 6.18 -35.74 -0.22 -0.24 16 17 C -0.03 0.04 2.97 36.01 0.11 0.15 16 18 O -0.52 0.05 12.88 -35.23 -0.45 -0.40 16 19 Si 0.70 -0.89 32.09 -169.99 -5.46 -6.34 16 20 C -0.15 -0.05 10.48 -37.45 -0.39 -0.44 16 21 C -0.15 0.17 7.48 -25.78 -0.19 -0.02 16 22 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 23 H 0.04 -0.06 8.14 -51.93 -0.42 -0.49 16 24 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 25 H 0.10 -0.02 8.10 -51.93 -0.42 -0.44 16 26 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 27 H 0.07 0.06 8.14 -51.93 -0.42 -0.37 16 28 H 0.07 0.08 7.85 -51.93 -0.41 -0.33 16 29 H 0.40 -0.78 7.64 -40.82 -0.31 -1.09 16 30 H 0.09 -0.08 8.14 -51.92 -0.42 -0.50 16 31 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 32 H 0.11 0.15 6.48 -51.93 -0.34 -0.18 16 33 H 0.14 -0.38 7.96 -51.93 -0.41 -0.79 16 34 H 0.38 -1.00 8.70 45.56 0.40 -0.61 16 35 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 36 H -0.26 -0.38 7.11 56.52 0.40 0.02 16 37 H 0.16 -0.27 7.74 -52.49 -0.41 -0.68 16 38 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 39 H 0.09 0.01 7.90 -51.93 -0.41 -0.40 16 LS Contribution 333.13 15.07 5.02 5.02 Total: 0.00 -7.21 333.13 -8.10 -15.31 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: -5.72 Total: -9.72 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.92 Total: 0.97 kcal Atomic # 7 Polarization: -0.19 SS G_CDS: -0.34 Total: -0.53 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.68 Total: -4.71 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: -5.46 Total: -6.34 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -7.21 -8.10 -15.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_13308374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.737 kcal (2) G-P(sol) polarization free energy of solvation -7.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds