Wall clock time and date at job start Sat Mar 6 2021 18:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.08993 * 112.85134 * 339.67146 * 3 2 1 5 5 C 1.53784 * 113.61008 * 110.86370 * 3 2 1 6 6 C 1.53955 * 87.01560 * 139.95181 * 5 3 2 7 7 H 1.08999 * 113.61801 * 89.19940 * 6 5 3 8 8 C 1.53001 * 113.66805 * 220.06704 * 6 5 3 9 9 N 1.46504 * 109.47034 * 272.56298 * 8 6 5 10 10 C 1.34778 * 119.99780 * 179.97438 * 9 8 6 11 11 O 1.21591 * 120.00072 * 359.97438 * 10 9 8 12 12 C 1.47564 * 119.99796 * 179.97438 * 10 9 8 13 13 C 1.39834 * 119.99905 * 359.72502 * 12 10 9 14 14 C 1.36567 * 119.99394 * 179.69171 * 13 12 10 15 15 C 1.39819 * 120.00230 * 0.58080 * 14 13 12 16 16 C 1.47556 * 119.99919 * 179.69466 * 15 14 13 17 17 C 1.34981 * 125.27630 * 0.02562 * 16 15 14 18 18 C 1.37800 * 114.70042 * 179.97438 * 17 16 15 19 19 C 1.33746 * 115.08266 * 0.02562 * 18 17 16 20 20 C 1.50691 * 125.11839 * 179.97438 * 19 18 17 21 21 O 1.42898 * 109.47197 * 299.99734 * 20 19 18 22 22 Si 1.86297 * 109.47222 * 180.02562 * 20 19 18 23 23 S 1.75860 * 109.76135 * 359.75398 * 19 18 17 24 24 C 1.39827 * 120.00414 * 359.71841 * 15 14 13 25 25 C 1.36567 * 119.99796 * 359.97438 * 24 15 14 26 26 C 1.53778 * 87.11473 * 334.63793 * 6 5 3 27 27 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 28 28 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 30 30 H 1.08998 * 113.61494 * 254.52472 * 5 3 2 31 31 H 1.09004 * 113.61540 * 25.43690 * 5 3 2 32 32 H 1.09005 * 109.47017 * 32.55789 * 8 6 5 33 33 H 1.09000 * 109.47432 * 152.55926 * 8 6 5 34 34 H 0.97000 * 119.99982 * 359.97438 * 9 8 6 35 35 H 1.07999 * 120.00199 * 359.97438 * 13 12 10 36 36 H 1.07996 * 119.99357 * 180.29754 * 14 13 12 37 37 H 1.08001 * 122.64797 * 359.96643 * 17 16 15 38 38 H 1.08004 * 122.45763 * 179.97438 * 18 17 16 39 39 H 1.09003 * 109.47599 * 59.99947 * 20 19 18 40 40 H 0.96700 * 114.00282 * 300.00140 * 21 20 19 41 41 H 1.48500 * 110.00077 * 58.67698 * 22 20 19 42 42 H 1.48500 * 110.00402 * 180.02562 * 22 20 19 43 43 H 1.07995 * 120.00303 * 179.97438 * 24 15 14 44 44 H 1.08000 * 120.00198 * 180.02562 * 25 24 15 45 45 H 1.09007 * 113.61442 * 270.81156 * 26 6 5 46 46 H 1.08995 * 113.69436 * 139.92475 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3219 2.0752 -0.3489 5 6 2.7192 1.6641 1.3167 6 6 3.8119 2.3229 0.4553 7 1 3.6181 3.3719 0.2312 8 6 5.2314 2.0782 0.9711 9 7 5.5792 3.1095 1.9518 10 6 6.7896 3.0950 2.5444 11 8 7.5928 2.2258 2.2654 12 6 7.1401 4.1341 3.5318 13 6 6.2186 5.1371 3.8484 14 6 6.5407 6.0950 4.7668 15 6 7.7964 6.0800 5.3816 16 6 8.1469 7.1190 6.3690 17 6 7.3403 8.1293 6.7572 18 6 7.8894 8.9769 7.6947 19 6 9.1344 8.6707 8.0756 20 6 9.9469 9.4418 9.0837 21 8 10.1189 10.7856 8.6292 22 14 11.6148 8.6364 9.2837 23 16 9.6781 7.2292 7.2276 24 6 8.7203 5.0807 5.0605 25 6 8.3959 4.1191 4.1467 26 6 3.3923 1.3646 -0.6717 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.1634 2.3702 1.9336 31 1 3.0681 0.7956 1.8754 32 1 5.2825 1.0967 1.4425 33 1 5.9328 2.1180 0.1377 34 1 4.9383 3.8027 2.1746 35 1 5.2505 5.1515 3.3699 36 1 5.8272 6.8668 5.0148 37 1 6.3433 8.2628 6.3640 38 1 7.3541 9.8266 8.0921 39 1 9.4277 9.4460 10.0421 40 1 10.5749 10.8582 7.7796 41 1 12.3195 8.5963 7.9772 42 1 12.4257 9.3870 10.2759 43 1 9.6903 5.0694 5.5351 44 1 9.1093 3.3470 3.8989 45 1 3.9255 0.4139 -0.6577 46 1 3.3789 1.8277 -1.6583 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12345242_13308390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:29:08 Heat of formation + Delta-G solvation = -24.874472 kcal Electronic energy + Delta-G solvation = -27577.398997 eV Core-core repulsion = 23526.155802 eV Total energy + Delta-G solvation = -4051.243195 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.40133 -40.61415 -39.78133 -39.04297 -37.54953 -37.40688 -35.34082 -33.55281 -32.33942 -30.70017 -29.22969 -27.62686 -27.00984 -26.71300 -24.76162 -23.98701 -23.62252 -23.03344 -21.68265 -20.69371 -20.32229 -19.30172 -18.64949 -17.84395 -17.62484 -17.06512 -16.77031 -16.64394 -16.41609 -16.35848 -16.21119 -16.08167 -15.87247 -15.50595 -15.30467 -14.94030 -14.60131 -14.49906 -14.22065 -14.14970 -13.81697 -13.66194 -13.64886 -13.51217 -13.30860 -13.12130 -12.92397 -12.57299 -12.56051 -12.36098 -12.14279 -12.04926 -11.81394 -11.55755 -11.51607 -10.92428 -10.88694 -10.65815 -10.49006 -10.23026 -10.09640 -9.58950 -9.05629 -5.12998 -0.90659 0.23813 0.30644 0.35043 0.71799 1.15872 1.51026 1.55763 1.84469 2.01607 2.07683 2.78783 2.84005 3.21041 3.35157 3.39818 3.47322 3.58862 3.63322 3.69738 3.70571 3.75132 3.79794 4.00779 4.13777 4.17614 4.26027 4.32388 4.36357 4.41670 4.43611 4.49055 4.56139 4.61749 4.63652 4.72662 4.74851 4.79159 4.85494 4.90089 4.95017 5.04284 5.05901 5.18752 5.20532 5.23785 5.27291 5.40029 5.42323 5.69556 6.22263 6.24349 6.43878 7.19491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.088 0.912 5 C -0.152 4.152 6 C -0.125 4.125 7 H 0.100 0.900 8 C 0.132 3.868 9 N -0.725 5.725 10 C 0.558 3.442 11 O -0.533 6.533 12 C -0.135 4.135 13 C -0.079 4.079 14 C -0.110 4.110 15 C 0.012 3.988 16 C -0.147 4.147 17 C -0.120 4.120 18 C -0.104 4.104 19 C -0.217 4.217 20 C -0.033 4.033 21 O -0.523 6.523 22 Si 0.648 3.352 23 S 0.134 5.866 24 C -0.120 4.120 25 C -0.049 4.049 26 C -0.126 4.126 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.400 0.600 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.128 0.872 40 H 0.378 0.622 41 H -0.240 1.240 42 H -0.234 1.234 43 H 0.131 0.869 44 H 0.142 0.858 45 H 0.096 0.904 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 1.865 0.326 4.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.002 3.998 4 H 0.106 0.894 5 C -0.190 4.190 6 C -0.144 4.144 7 H 0.118 0.882 8 C 0.009 3.991 9 N -0.378 5.378 10 C 0.345 3.655 11 O -0.411 6.411 12 C -0.139 4.139 13 C -0.097 4.097 14 C -0.130 4.130 15 C 0.010 3.990 16 C -0.264 4.264 17 C -0.150 4.150 18 C -0.134 4.134 19 C -0.335 4.335 20 C -0.145 4.145 21 O -0.330 6.330 22 Si 0.547 3.453 23 S 0.401 5.599 24 C -0.138 4.138 25 C -0.068 4.068 26 C -0.164 4.164 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.146 0.854 40 H 0.226 0.774 41 H -0.164 1.164 42 H -0.157 1.157 43 H 0.149 0.851 44 H 0.160 0.840 45 H 0.115 0.885 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.787 0.439 0.630 1.945 hybrid contribution -2.058 2.296 -0.708 3.163 sum -3.845 2.735 -0.078 4.719 Atomic orbital electron populations 1.22811 0.80929 1.03038 0.99979 1.87966 1.19854 1.27152 1.94559 1.23696 0.93954 0.85536 0.96631 0.89388 1.23673 0.97048 1.01076 0.97173 1.22605 0.93765 1.00073 0.97921 0.88231 1.21368 0.94735 0.91452 0.91587 1.45900 1.16369 1.31626 1.43896 1.18211 0.81691 0.84792 0.80787 1.90817 1.49261 1.37631 1.63360 1.20022 0.96214 0.97295 1.00338 1.20955 0.98669 0.93450 0.96671 1.20864 0.95755 0.99461 0.96880 1.18292 0.94151 0.92705 0.93850 1.23093 0.98720 1.00916 1.03716 1.20388 1.01126 0.94601 0.98914 1.20002 0.94221 1.00957 0.98247 1.25037 1.00161 1.01945 1.06357 1.24372 1.07780 0.85090 0.97257 1.86627 1.80141 1.23884 1.42346 0.95217 0.76495 0.89620 0.83982 1.84175 1.15080 1.24409 1.36187 1.20980 0.99467 0.94584 0.98810 1.20954 0.95207 0.97443 0.93191 1.23193 0.95234 1.00179 0.97768 0.93920 0.89506 0.93967 0.91051 0.88761 0.90772 0.90854 0.76466 0.85259 0.84840 0.83775 0.83668 0.85436 0.77397 1.16382 1.15702 0.85135 0.84036 0.88512 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.59 10.71 -35.23 -0.38 -0.97 16 3 C 0.06 -0.05 4.29 -25.92 -0.11 -0.16 16 4 H 0.09 -0.19 7.88 -51.93 -0.41 -0.60 16 5 C -0.15 0.24 7.48 -25.83 -0.19 0.05 16 6 C -0.12 0.29 3.75 -89.72 -0.34 -0.04 16 7 H 0.10 -0.36 8.14 -51.93 -0.42 -0.79 16 8 C 0.13 -0.06 5.51 -4.04 -0.02 -0.08 16 9 N -0.73 0.38 5.50 -61.33 -0.34 0.04 16 10 C 0.56 1.41 7.76 -12.46 -0.10 1.31 16 11 O -0.53 -3.43 16.33 5.29 0.09 -3.35 16 12 C -0.14 -0.14 5.88 -104.90 -0.62 -0.76 16 13 C -0.08 0.10 9.48 -39.59 -0.38 -0.28 16 14 C -0.11 0.11 9.48 -39.59 -0.38 -0.26 16 15 C 0.01 0.00 5.88 -104.91 -0.62 -0.61 16 16 C -0.15 -0.04 6.37 -36.94 -0.24 -0.28 16 17 C -0.12 0.05 9.64 -40.90 -0.39 -0.34 16 18 C -0.10 0.02 10.00 -41.32 -0.41 -0.39 16 19 C -0.22 0.05 5.73 -35.89 -0.21 -0.16 16 20 C -0.03 0.02 2.96 36.00 0.11 0.13 16 21 O -0.52 -0.30 12.86 -35.23 -0.45 -0.76 16 22 Si 0.65 -0.62 30.95 -169.99 -5.26 -5.88 16 23 S 0.13 -0.03 19.46 -107.50 -2.09 -2.12 16 24 C -0.12 -0.06 9.54 -39.59 -0.38 -0.44 16 25 C -0.05 -0.07 9.53 -39.59 -0.38 -0.44 16 26 C -0.13 0.17 7.47 -25.92 -0.19 -0.02 16 27 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16 28 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 31 H 0.09 -0.03 7.90 -51.93 -0.41 -0.44 16 32 H 0.07 0.06 7.85 -51.93 -0.41 -0.34 16 33 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.40 -1.31 6.48 -40.82 -0.26 -1.58 16 35 H 0.13 -0.55 6.38 -52.49 -0.34 -0.88 16 36 H 0.13 -0.42 6.74 -52.49 -0.35 -0.77 16 37 H 0.14 -0.34 6.88 -52.49 -0.36 -0.70 16 38 H 0.15 -0.15 8.06 -52.48 -0.42 -0.57 16 39 H 0.13 -0.21 7.96 -51.93 -0.41 -0.62 16 40 H 0.38 -0.80 8.70 45.56 0.40 -0.40 16 41 H -0.24 -0.22 7.11 56.52 0.40 0.19 16 42 H -0.23 -0.39 7.11 56.52 0.40 0.01 16 43 H 0.13 -0.09 7.26 -52.49 -0.38 -0.47 16 44 H 0.14 0.21 7.64 -52.49 -0.40 -0.19 16 45 H 0.10 -0.04 8.10 -51.92 -0.42 -0.46 16 46 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 LS Contribution 396.49 15.07 5.97 5.97 Total: 0.00 -7.98 396.49 -12.54 -20.52 By element: Atomic # 1 Polarization: -5.41 SS G_CDS: -6.34 Total: -11.75 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.74 Total: -1.71 kcal Atomic # 7 Polarization: 0.38 SS G_CDS: -0.34 Total: 0.04 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.74 Total: -5.07 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.26 Total: -5.88 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.09 Total: -2.12 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -7.98 -12.54 -20.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_13308390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.358 kcal (2) G-P(sol) polarization free energy of solvation -7.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds