Wall clock time and date at job start Sat Mar 6 2021 18:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00215 * 2 1 4 4 H 1.09001 * 112.90844 * 18.74775 * 3 2 1 5 5 C 1.53782 * 113.61633 * 149.99807 * 3 2 1 6 6 C 1.53777 * 87.08120 * 139.98289 * 5 3 2 7 7 H 1.08995 * 113.61611 * 89.20462 * 6 5 3 8 8 C 1.53001 * 113.61322 * 220.02328 * 6 5 3 9 9 N 1.46502 * 109.47214 * 183.46906 * 8 6 5 10 10 C 1.34775 * 120.00043 * 179.97438 * 9 8 6 11 11 O 1.21589 * 119.99880 * 0.02562 * 10 9 8 12 12 C 1.47538 * 120.00028 * 180.02562 * 10 9 8 13 13 C 1.40140 * 120.19020 * 180.02562 * 12 10 9 14 14 O 1.35647 * 120.15377 * 0.02562 * 13 12 10 15 15 C 1.38706 * 119.69697 * 179.97438 * 13 12 10 16 16 C 1.50695 * 119.95971 * 179.97438 * 15 13 12 17 17 O 1.42899 * 109.47022 * 75.02138 * 16 15 13 18 18 Si 1.86301 * 109.47614 * 195.02521 * 16 15 13 19 19 C 1.38056 * 120.08610 * 0.02562 * 15 13 12 20 20 C 1.38555 * 120.38945 * 359.97438 * 19 15 13 21 21 C 1.50697 * 119.84915 * 179.74864 * 20 19 15 22 22 C 1.37783 * 120.30103 * 0.02562 * 20 19 15 23 23 C 1.53777 * 87.17324 * 334.60933 * 6 5 3 24 24 H 1.09006 * 109.47239 * 300.00147 * 1 2 3 25 25 H 1.09004 * 109.46842 * 59.99604 * 1 2 3 26 26 H 1.08994 * 109.47572 * 180.02562 * 1 2 3 27 27 H 1.09005 * 113.61374 * 25.43116 * 5 3 2 28 28 H 1.08999 * 113.69159 * 254.54654 * 5 3 2 29 29 H 1.09001 * 109.47640 * 63.46997 * 8 6 5 30 30 H 1.09005 * 109.47129 * 303.46852 * 8 6 5 31 31 H 0.96997 * 119.99541 * 0.02562 * 9 8 6 32 32 H 0.96700 * 113.99728 * 269.98311 * 14 13 12 33 33 H 1.09001 * 109.46934 * 315.02776 * 16 15 13 34 34 H 0.96706 * 114.00012 * 60.00345 * 17 16 15 35 35 H 1.48495 * 110.00110 * 179.97438 * 18 16 15 36 36 H 1.48501 * 109.99636 * 301.31938 * 18 16 15 37 37 H 1.08005 * 119.80842 * 179.97438 * 19 15 13 38 38 H 1.09000 * 109.46990 * 89.99676 * 21 20 19 39 39 H 1.08998 * 109.47509 * 209.99595 * 21 20 19 40 40 H 1.09002 * 109.47547 * 330.00160 * 21 20 19 41 41 H 1.07999 * 120.04938 * 179.97438 * 22 20 19 42 42 H 1.08998 * 113.61380 * 139.94026 * 23 6 5 43 43 H 1.09009 * 113.61840 * 270.84303 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0798 0.3227 5 6 3.3756 1.3719 0.7046 6 6 3.8227 2.3181 -0.4221 7 1 3.6236 3.3694 -0.2142 8 6 5.2543 2.0679 -0.9006 9 7 5.6133 3.0667 -1.9104 10 6 6.8359 3.0426 -2.4773 11 8 7.6406 2.1916 -2.1508 12 6 7.1976 4.0488 -3.4938 13 6 8.4675 4.0271 -4.0861 14 8 9.3704 3.0802 -3.7280 15 6 8.7966 4.9777 -5.0412 16 6 10.1606 4.9602 -5.6815 17 8 10.2287 3.8922 -6.6284 18 14 10.4596 6.5808 -6.5506 19 6 7.8765 5.9405 -5.4051 20 6 6.6200 5.9652 -4.8218 21 6 5.6271 7.0251 -5.2240 22 6 6.2762 5.0287 -3.8714 23 6 2.7534 1.6511 -1.3032 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.9088 0.4212 0.7139 28 1 3.3398 1.8466 1.6851 29 1 5.3231 1.0707 -1.3354 30 1 5.9384 2.1436 -0.0553 31 1 4.9714 3.7457 -2.1705 32 1 9.9379 3.3377 -2.9886 33 1 10.9205 4.8140 -4.9138 34 1 9.5793 3.9573 -7.3420 35 1 11.8019 6.5764 -7.1857 36 1 9.4116 6.8068 -7.5781 37 1 8.1377 6.6787 -6.1489 38 1 5.0312 6.6651 -6.0628 39 1 4.9718 7.2475 -4.3819 40 1 6.1599 7.9292 -5.5185 41 1 5.2957 5.0520 -3.4191 42 1 2.2147 2.3514 -1.9416 43 1 3.1162 0.7769 -1.8440 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_13422088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:29:12 Heat of formation + Delta-G solvation = -102.405986 kcal Electronic energy + Delta-G solvation = -25318.511172 eV Core-core repulsion = 21524.513701 eV Total energy + Delta-G solvation = -3793.997472 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77861 -40.70486 -39.84562 -38.07487 -37.81336 -37.41023 -35.34027 -33.09716 -32.88911 -29.25456 -27.55702 -27.41198 -26.78919 -26.68683 -24.96787 -23.18490 -21.98393 -21.62428 -20.51201 -19.69098 -18.46950 -18.27213 -17.55833 -17.39207 -16.87122 -16.64123 -16.51614 -16.34705 -16.04957 -15.93617 -15.70440 -15.36384 -14.97610 -14.73654 -14.44693 -14.21238 -14.14207 -13.63974 -13.53798 -13.44355 -13.35898 -12.90655 -12.88412 -12.52304 -12.44493 -12.25372 -11.98124 -11.82812 -11.71709 -11.71102 -11.42618 -11.02145 -10.53908 -10.42802 -10.30767 -10.02570 -9.50252 -4.95165 -0.35092 0.07753 1.24945 1.55081 1.70573 1.93211 2.04252 2.56041 2.88075 3.16855 3.33711 3.43511 3.53198 3.56378 3.66941 3.76716 3.81611 3.83831 4.09677 4.13528 4.19398 4.29038 4.38481 4.45936 4.51061 4.54194 4.63189 4.64912 4.72227 4.80466 4.81731 4.83478 4.85917 4.90090 4.98108 5.00489 5.13205 5.18536 5.25330 5.25594 5.42047 5.42916 5.68640 6.31542 6.44489 6.46002 6.73629 7.14070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.055 3.945 4 H 0.108 0.892 5 C -0.131 4.131 6 C -0.106 4.106 7 H 0.127 0.873 8 C 0.135 3.865 9 N -0.710 5.710 10 C 0.552 3.448 11 O -0.568 6.568 12 C -0.180 4.180 13 C 0.163 3.837 14 O -0.492 6.492 15 C -0.153 4.153 16 C -0.086 4.086 17 O -0.548 6.548 18 Si 0.786 3.214 19 C -0.080 4.080 20 C -0.094 4.094 21 C -0.118 4.118 22 C -0.060 4.060 23 C -0.151 4.151 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.414 0.586 32 H 0.402 0.598 33 H 0.113 0.887 34 H 0.383 0.617 35 H -0.305 1.305 36 H -0.267 1.267 37 H 0.154 0.846 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.160 0.840 42 H 0.088 0.912 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 10.017 1.350 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.003 4.003 4 H 0.126 0.874 5 C -0.169 4.169 6 C -0.125 4.125 7 H 0.145 0.855 8 C 0.011 3.989 9 N -0.363 5.363 10 C 0.340 3.660 11 O -0.448 6.448 12 C -0.184 4.184 13 C 0.116 3.884 14 O -0.305 6.305 15 C -0.154 4.154 16 C -0.193 4.193 17 O -0.355 6.355 18 Si 0.690 3.310 19 C -0.097 4.097 20 C -0.094 4.094 21 C -0.174 4.174 22 C -0.078 4.078 23 C -0.189 4.189 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.253 0.747 32 H 0.261 0.739 33 H 0.131 0.869 34 H 0.232 0.768 35 H -0.234 1.234 36 H -0.193 1.193 37 H 0.172 0.828 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.178 0.822 42 H 0.107 0.893 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.196 9.090 0.814 11.031 hybrid contribution -0.332 -0.947 -0.350 1.062 sum -6.528 8.144 0.464 10.447 Atomic orbital electron populations 1.22933 0.79921 1.03473 1.00858 1.87930 1.21195 1.28754 1.94725 1.23926 0.94223 0.85224 0.96911 0.87380 1.23220 0.95239 0.99829 0.98632 1.22508 0.91722 1.01228 0.97032 0.85536 1.21289 0.95850 0.91205 0.90549 1.45756 1.14708 1.33911 1.41956 1.18390 0.82251 0.84130 0.81230 1.90814 1.51051 1.39128 1.63768 1.20412 0.96845 0.99696 1.01444 1.18572 0.88708 0.87452 0.93642 1.84765 1.49885 1.40314 1.55515 1.20644 0.98387 0.96300 1.00113 1.25334 0.95662 1.02258 0.96072 1.86642 1.61044 1.47690 1.40163 0.94061 0.76373 0.78119 0.82451 1.21419 0.92669 0.96982 0.98670 1.20118 0.95395 0.97735 0.96124 1.20925 0.97361 0.96049 1.03054 1.21429 0.98873 0.91701 0.95821 1.23612 0.97331 1.00725 0.97182 0.92878 0.93149 0.89461 0.90363 0.89209 0.93160 0.91800 0.74744 0.73881 0.86861 0.76813 1.23383 1.19269 0.82834 0.90230 0.89493 0.89836 0.82213 0.89339 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.41 -1.60 10.72 -148.98 -1.60 -3.20 16 3 C 0.05 -0.10 4.31 31.18 0.13 0.03 16 4 H 0.11 -0.65 7.87 -2.39 -0.02 -0.67 16 5 C -0.13 0.30 7.47 31.12 0.23 0.53 16 6 C -0.11 0.53 3.75 -10.27 -0.04 0.49 16 7 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 8 C 0.13 0.11 5.50 86.38 0.47 0.58 16 9 N -0.71 0.10 5.51 -466.26 -2.57 -2.47 16 10 C 0.55 4.23 7.76 86.70 0.67 4.91 16 11 O -0.57 -9.63 15.16 16.92 0.26 -9.37 16 12 C -0.18 -0.72 5.89 -20.01 -0.12 -0.83 16 13 C 0.16 1.06 6.69 22.84 0.15 1.21 16 14 O -0.49 -5.24 10.91 -68.70 -0.75 -5.99 16 15 C -0.15 -0.24 5.27 -19.80 -0.10 -0.35 16 16 C -0.09 -0.14 2.38 71.23 0.17 0.03 16 17 O -0.55 -3.74 12.88 -148.98 -1.92 -5.66 16 18 Si 0.79 -2.34 30.24 68.60 2.07 -0.27 16 19 C -0.08 0.25 8.30 22.30 0.19 0.44 16 20 C -0.09 0.47 5.87 -19.90 -0.12 0.35 16 21 C -0.12 1.22 10.00 71.24 0.71 1.93 16 22 C -0.06 0.22 9.18 22.52 0.21 0.42 16 23 C -0.15 0.46 7.48 31.18 0.23 0.69 16 24 H 0.05 -0.21 8.14 -2.38 -0.02 -0.23 16 25 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.08 0.11 8.10 -2.38 -0.02 0.09 16 28 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.05 0.28 7.87 -2.39 -0.02 0.27 16 30 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 31 H 0.41 -3.04 6.50 -92.71 -0.60 -3.65 16 32 H 0.40 1.48 9.06 -74.06 -0.67 0.80 16 33 H 0.11 0.13 7.83 -2.39 -0.02 0.12 16 34 H 0.38 0.16 8.70 -74.05 -0.64 -0.48 16 35 H -0.31 -1.68 7.11 99.48 0.71 -0.97 16 36 H -0.27 0.45 6.68 99.48 0.66 1.12 16 37 H 0.15 -1.10 4.83 -2.91 -0.01 -1.11 16 38 H 0.08 -0.84 8.14 -2.39 -0.02 -0.86 16 39 H 0.09 -1.12 8.08 -2.39 -0.02 -1.14 16 40 H 0.08 -0.99 8.08 -2.39 -0.02 -1.01 16 41 H 0.16 -1.69 6.40 -2.91 -0.02 -1.71 16 42 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.07 0.12 7.92 -2.38 -0.02 0.10 16 Total: 0.00 -25.87 356.29 -1.34 -27.21 By element: Atomic # 1 Polarization: -11.03 SS G_CDS: -0.87 Total: -11.89 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 4.03 Total: 11.64 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -2.57 Total: -2.47 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -4.01 Total: -24.22 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: 2.07 Total: -0.27 kcal Total: -25.87 -1.34 -27.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_13422088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.193 kcal (2) G-P(sol) polarization free energy of solvation -25.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds