Wall clock time and date at job start Sat Mar 6 2021 18:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35989 * 117.00101 * 2 1 4 4 C 1.39158 * 120.07161 * 180.02562 * 3 2 1 5 5 O 1.35995 * 120.07117 * 0.02562 * 4 3 2 6 6 C 1.42905 * 116.99762 * 179.72750 * 5 4 3 7 7 C 1.50699 * 109.46972 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00169 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46993 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.84957 * 43.80887 * 11 10 9 13 13 C 1.53778 * 113.61662 * 272.49751 * 11 10 9 14 14 C 1.53779 * 87.08082 * 220.02379 * 13 11 10 15 15 H 1.09010 * 113.61182 * 270.88077 * 14 13 11 16 16 O 1.42900 * 113.69075 * 139.99388 * 14 13 11 17 17 C 1.42896 * 113.99906 * 112.46365 * 16 14 13 18 18 C 1.53775 * 87.08361 * 25.43025 * 14 13 11 19 19 C 1.38564 * 119.85468 * 179.72924 * 4 3 2 20 20 C 1.38249 * 119.99882 * 0.27173 * 19 4 3 21 21 N 1.48002 * 119.92635 * 180.02562 * 20 19 4 22 22 O 1.21803 * 120.00239 * 0.02562 * 21 20 19 23 23 O 1.21801 * 119.99859 * 180.02562 * 21 20 19 24 24 C 1.38252 * 120.14299 * 0.02562 * 20 19 4 25 25 C 1.50705 * 119.92388 * 179.97438 * 24 20 19 26 26 O 1.42899 * 109.46745 * 74.99968 * 25 24 20 27 27 Si 1.86292 * 109.47107 * 194.99960 * 25 24 20 28 28 C 1.38239 * 120.14893 * 359.97438 * 24 20 19 29 29 H 1.08994 * 109.47500 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46774 * 300.00110 * 1 2 3 31 31 H 1.08997 * 109.46907 * 59.99269 * 1 2 3 32 32 H 1.09004 * 109.47054 * 299.99753 * 6 5 4 33 33 H 1.09000 * 109.47187 * 59.99808 * 6 5 4 34 34 H 0.96996 * 119.99844 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.47042 * 300.00295 * 10 9 7 36 36 H 1.09004 * 109.46923 * 59.99881 * 10 9 7 37 37 H 1.09002 * 113.61062 * 334.56760 * 13 11 10 38 38 H 1.08994 * 113.61671 * 105.47018 * 13 11 10 39 39 H 1.08997 * 109.47601 * 60.00174 * 17 16 14 40 40 H 1.09004 * 109.47242 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.47323 * 299.99522 * 17 16 14 42 42 H 1.09009 * 113.61739 * 220.01890 * 18 14 13 43 43 H 1.09001 * 113.69466 * 89.12957 * 18 14 13 44 44 H 1.07997 * 120.00180 * 180.25589 * 19 4 3 45 45 H 1.09001 * 109.47255 * 315.00297 * 25 24 20 46 46 H 0.96709 * 114.00176 * 60.00477 * 26 25 24 47 47 H 1.48503 * 109.99938 * 58.68810 * 27 25 24 48 48 H 1.48506 * 109.99928 * 179.97438 * 27 25 24 49 49 H 1.07999 * 120.00021 * 180.02562 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2862 -0.0005 5 8 4.1795 0.1475 -0.0016 6 6 5.6003 0.3004 -0.0081 7 6 6.2518 -1.0584 -0.0077 8 8 5.5669 -2.0593 -0.0019 9 7 7.5956 -1.1615 -0.0139 10 6 8.2290 -2.4826 -0.0129 11 6 9.7502 -2.3188 -0.0200 12 1 10.0964 -1.5508 0.6716 13 6 10.3499 -2.1958 -1.4307 14 6 11.5005 -3.0870 -0.9338 15 1 12.3263 -2.5284 -0.4931 16 8 11.9337 -4.0533 -1.8933 17 6 13.2515 -3.8232 -2.3956 18 6 10.5134 -3.6481 0.1032 19 6 4.0604 2.5232 -0.0062 20 6 3.3031 3.6798 -0.0056 21 7 3.9717 5.0001 -0.0123 22 8 5.1879 5.0670 -0.0187 23 8 3.3057 6.0200 -0.0113 24 6 1.9226 3.6056 0.0011 25 6 1.1018 4.8696 0.0023 26 8 1.1287 5.4561 -1.3005 27 14 -0.6570 4.4675 0.4661 28 6 1.2934 2.3748 0.0068 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 5.9027 0.8485 -0.9006 33 1 5.9105 0.8520 0.8794 34 1 8.1434 -0.3611 -0.0182 35 1 7.9270 -3.0296 0.8802 36 1 7.9184 -3.0350 -0.8997 37 1 9.7410 -2.6608 -2.2060 38 1 10.6611 -1.1829 -1.6861 39 1 13.9640 -3.8469 -1.5711 40 1 13.5059 -4.5993 -3.1175 41 1 13.2901 -2.8481 -2.8814 42 1 10.9566 -3.8077 1.0863 43 1 9.9486 -4.5103 -0.2514 44 1 5.1387 2.5838 -0.0108 45 1 1.5169 5.5717 0.7254 46 1 0.7734 4.8858 -1.9961 47 1 -0.6954 3.8279 1.8058 48 1 -1.4767 5.7058 0.4715 49 1 0.2148 2.3197 0.0116 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:30:06 Heat of formation + Delta-G solvation = -114.852628 kcal Electronic energy + Delta-G solvation = -35310.471712 eV Core-core repulsion = 30210.698267 eV Total energy + Delta-G solvation = -5099.773445 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.160 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.40546 -42.11757 -41.16288 -40.41430 -39.56935 -39.18794 -37.75285 -37.46054 -37.12614 -35.39452 -32.68486 -32.58142 -30.73010 -28.93823 -28.38466 -27.90905 -27.28261 -26.65366 -25.77089 -23.98067 -23.34311 -23.08652 -21.90543 -20.77943 -20.57749 -19.85660 -19.50866 -18.75490 -18.68659 -18.51582 -17.81978 -17.77597 -17.52965 -17.30942 -16.92187 -16.76443 -16.57817 -16.38878 -16.19538 -16.08764 -15.85553 -15.60741 -15.26712 -14.94574 -14.71578 -14.38500 -14.31353 -13.90418 -13.84563 -13.61357 -13.46287 -13.42938 -13.02933 -12.89338 -12.67313 -12.49773 -12.45260 -12.43937 -12.33168 -12.27626 -12.21357 -11.97970 -11.78512 -11.72327 -11.43101 -11.07413 -10.53640 -10.46241 -10.42655 -10.23852 -9.49412 -5.13618 -1.36845 -0.43752 0.15955 0.30110 1.12808 1.23979 1.38045 1.57233 1.89479 1.89615 1.93709 2.33657 2.88206 2.97739 3.17057 3.26738 3.40691 3.46904 3.53105 3.55715 3.65936 3.81428 3.83419 3.88209 3.93837 3.94338 4.05745 4.10748 4.11300 4.22450 4.29729 4.39083 4.41521 4.46152 4.54131 4.54752 4.64700 4.72059 4.73498 4.81523 4.81939 4.83091 4.86397 5.01248 5.12687 5.21798 5.24880 5.40277 5.58179 6.05975 6.31217 6.37713 6.46404 6.71290 7.06157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.308 6.308 3 C 0.171 3.829 4 C 0.100 3.900 5 O -0.291 6.291 6 C 0.028 3.972 7 C 0.514 3.486 8 O -0.569 6.569 9 N -0.707 5.707 10 C 0.135 3.865 11 C -0.106 4.106 12 H 0.126 0.874 13 C -0.149 4.149 14 C 0.052 3.948 15 H 0.105 0.895 16 O -0.406 6.406 17 C 0.024 3.976 18 C -0.132 4.132 19 C -0.110 4.110 20 C -0.046 4.046 21 N 0.036 4.964 22 O -0.186 6.186 23 O -0.166 6.166 24 C -0.040 4.040 25 C -0.091 4.091 26 O -0.536 6.536 27 Si 0.787 3.213 28 C -0.163 4.163 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.422 0.578 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.183 0.817 45 H 0.115 0.885 46 H 0.393 0.607 47 H -0.272 1.272 48 H -0.290 1.290 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 -2.279 -0.531 2.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.219 6.219 3 C 0.122 3.878 4 C 0.053 3.947 5 O -0.204 6.204 6 C -0.050 4.050 7 C 0.299 3.701 8 O -0.448 6.448 9 N -0.361 5.361 10 C 0.011 3.989 11 C -0.125 4.125 12 H 0.144 0.856 13 C -0.187 4.187 14 C -0.006 4.006 15 H 0.123 0.877 16 O -0.325 6.325 17 C -0.072 4.072 18 C -0.170 4.170 19 C -0.129 4.129 20 C -0.131 4.131 21 N 0.549 4.451 22 O -0.397 6.397 23 O -0.380 6.380 24 C -0.042 4.042 25 C -0.199 4.199 26 O -0.343 6.343 27 Si 0.689 3.311 28 C -0.181 4.181 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.260 0.740 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.201 0.799 45 H 0.132 0.868 46 H 0.242 0.758 47 H -0.198 1.198 48 H -0.218 1.218 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.178 -3.573 0.296 3.774 hybrid contribution 1.456 1.291 0.200 1.956 sum 0.278 -2.282 0.496 2.352 Atomic orbital electron populations 1.23815 0.74669 1.07078 1.04205 1.86335 1.24883 1.24521 1.86177 1.18681 0.89156 0.86399 0.93550 1.17977 0.88848 0.85109 1.02803 1.86305 1.18491 1.26842 1.88720 1.22909 0.78787 0.95981 1.07316 1.20348 0.83091 0.90463 0.76157 1.90786 1.64023 1.39922 1.50043 1.45670 1.05137 1.10710 1.74593 1.21316 0.91881 0.83892 1.01795 1.22505 0.91929 0.99512 0.98551 0.85635 1.23582 0.97525 1.00938 0.96643 1.23909 0.95929 0.90656 0.90075 0.87692 1.87924 1.33151 1.51807 1.59655 1.22928 0.83047 1.02043 0.99160 1.23234 0.96949 0.97300 0.99524 1.20903 1.03014 0.88131 1.00887 1.20557 0.92766 0.81914 1.17815 1.43717 1.00825 1.03438 0.97158 1.94500 0.96513 1.94121 1.54531 1.94578 1.64415 1.25407 1.53570 1.20227 0.91066 0.97667 0.95254 1.25768 1.10585 0.92786 0.90798 1.86670 1.86991 1.44617 1.16030 0.94391 0.71823 0.82180 0.82733 1.21081 1.01778 0.88076 1.07191 0.86095 0.90154 0.88811 0.85365 0.85368 0.74030 0.91810 0.92527 0.90540 0.89452 0.93015 0.89392 0.93170 0.89467 0.90139 0.79939 0.86797 0.75798 1.19782 1.21750 0.78944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.16 16 2 O -0.31 0.06 10.28 -79.56 -0.82 -0.76 16 3 C 0.17 -0.18 6.70 22.57 0.15 -0.02 16 4 C 0.10 0.06 6.70 22.57 0.15 0.22 16 5 O -0.29 -1.02 9.45 -67.08 -0.63 -1.65 16 6 C 0.03 -0.12 5.22 71.24 0.37 0.26 16 7 C 0.51 0.95 7.91 87.66 0.69 1.65 16 8 O -0.57 -7.71 16.50 16.00 0.26 -7.45 16 9 N -0.71 3.44 5.56 -463.05 -2.57 0.86 16 10 C 0.13 -0.31 5.51 86.38 0.48 0.17 16 11 C -0.11 0.72 3.75 -10.27 -0.04 0.68 16 12 H 0.13 -1.40 8.14 -2.39 -0.02 -1.42 16 13 C -0.15 0.69 7.47 31.12 0.23 0.92 16 14 C 0.05 -0.13 4.31 31.12 0.13 0.00 16 15 H 0.11 -0.65 7.87 -2.38 -0.02 -0.67 16 16 O -0.41 -1.28 10.72 -148.98 -1.60 -2.88 16 17 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 18 C -0.13 0.45 7.47 31.12 0.23 0.68 16 19 C -0.11 0.07 8.54 22.35 0.19 0.26 16 20 C -0.05 -0.15 6.85 36.38 0.25 0.10 16 21 N 0.04 0.34 4.45 -46.46 -0.21 0.13 16 22 O -0.19 -1.94 18.44 18.88 0.35 -1.59 16 23 O -0.17 -2.12 14.62 25.10 0.37 -1.76 16 24 C -0.04 0.02 5.26 -19.86 -0.10 -0.08 16 25 C -0.09 0.00 1.74 71.24 0.12 0.12 16 26 O -0.54 -0.61 11.80 -129.62 -1.53 -2.14 16 27 Si 0.79 -4.19 29.91 68.60 2.05 -2.14 16 28 C -0.16 0.85 7.65 22.35 0.17 1.02 16 29 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 30 H 0.08 -1.05 7.65 -2.39 -0.02 -1.06 16 31 H 0.09 -1.41 7.68 -2.39 -0.02 -1.43 16 32 H 0.13 -1.31 7.66 -2.38 -0.02 -1.32 16 33 H 0.13 -1.32 7.66 -2.39 -0.02 -1.34 16 34 H 0.42 -5.22 8.47 -92.71 -0.79 -6.01 16 35 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 36 H 0.06 0.10 7.85 -2.39 -0.02 0.09 16 37 H 0.08 -0.06 7.90 -2.39 -0.02 -0.08 16 38 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.09 -0.25 8.14 -2.38 -0.02 -0.27 16 41 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.09 -0.46 8.14 -2.38 -0.02 -0.48 16 43 H 0.08 -0.01 8.10 -2.39 -0.02 -0.03 16 44 H 0.18 -0.96 5.85 -2.91 -0.02 -0.97 16 45 H 0.11 0.55 6.07 -2.39 -0.01 0.54 16 46 H 0.39 -3.48 8.70 -74.05 -0.64 -4.12 16 47 H -0.27 0.53 7.11 99.48 0.71 1.24 16 48 H -0.29 -0.79 7.11 99.48 0.71 -0.09 16 49 H 0.19 -2.42 3.36 -2.91 -0.01 -2.43 16 Total: 0.00 -34.14 411.62 0.69 -33.45 By element: Atomic # 1 Polarization: -22.03 SS G_CDS: -0.36 Total: -22.39 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.38 Total: 8.31 kcal Atomic # 7 Polarization: 3.77 SS G_CDS: -2.78 Total: 0.99 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -3.60 Total: -18.22 kcal Atomic # 14 Polarization: -4.19 SS G_CDS: 2.05 Total: -2.14 kcal Total: -34.14 0.69 -33.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.403 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds