Wall clock time and date at job start Sat Mar 6 2021 18:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42897 * 114.00521 * 2 1 4 4 H 1.09004 * 112.84798 * 341.20366 * 3 2 1 5 5 C 1.53954 * 113.66845 * 112.44167 * 3 2 1 6 6 C 1.53783 * 87.01969 * 139.93975 * 5 3 2 7 7 H 1.08996 * 113.61628 * 89.23347 * 6 5 3 8 8 C 1.53003 * 113.61141 * 220.04814 * 6 5 3 9 9 N 1.46500 * 109.47157 * 274.13626 * 8 6 5 10 10 C 1.34777 * 119.99928 * 179.97438 * 9 8 6 11 11 O 1.21275 * 119.99849 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00079 * 179.97438 * 10 9 8 13 13 O 1.42895 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.35903 * 117.00049 * 179.97438 * 13 12 10 15 15 C 1.38715 * 120.05514 * 179.97438 * 14 13 12 16 16 N 1.48006 * 120.02771 * 359.75008 * 15 14 13 17 17 O 1.21794 * 119.99979 * 179.97438 * 16 15 14 18 18 O 1.21800 * 119.99844 * 0.02562 * 16 15 14 19 19 C 1.38165 * 119.94424 * 179.72952 * 15 14 13 20 20 C 1.38247 * 120.05332 * 0.02562 * 19 15 14 21 21 C 1.50696 * 119.94295 * 179.97438 * 20 19 15 22 22 O 1.42900 * 109.47050 * 300.00218 * 21 20 19 23 23 Si 1.86298 * 109.47186 * 180.02562 * 21 20 19 24 24 C 1.38291 * 120.11211 * 359.95752 * 20 19 15 25 25 C 1.38119 * 120.05459 * 0.04752 * 24 20 19 26 26 C 1.53772 * 113.62091 * 210.00485 * 3 2 1 27 27 H 1.09000 * 109.47487 * 59.99703 * 1 2 3 28 28 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47085 * 299.99689 * 1 2 3 30 30 H 1.08993 * 113.61107 * 25.41579 * 5 3 2 31 31 H 1.09008 * 113.66621 * 254.46630 * 5 3 2 32 32 H 1.09000 * 109.47069 * 154.13500 * 8 6 5 33 33 H 1.08996 * 109.46849 * 34.13489 * 8 6 5 34 34 H 0.96994 * 120.00066 * 0.02562 * 9 8 6 35 35 H 1.09000 * 109.47059 * 60.00257 * 12 10 9 36 36 H 1.08999 * 109.46888 * 300.00512 * 12 10 9 37 37 H 1.07992 * 119.96889 * 180.02562 * 19 15 14 38 38 H 1.09001 * 109.47248 * 60.00111 * 21 20 19 39 39 H 0.96708 * 114.00072 * 179.97438 * 22 21 20 40 40 H 1.48493 * 110.00083 * 59.99987 * 23 21 20 41 41 H 1.48507 * 109.99895 * 181.31975 * 23 21 20 42 42 H 1.07999 * 119.97000 * 180.02562 * 24 20 19 43 43 H 1.08008 * 120.02409 * 180.02562 * 25 24 20 44 44 H 1.09006 * 113.61771 * 105.46563 * 26 3 2 45 45 H 1.08999 * 113.69105 * 334.57764 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7534 1.6510 1.3033 6 6 3.8227 2.3181 0.4221 7 1 3.6236 3.3694 0.2143 8 6 5.2543 2.0679 0.9005 9 7 5.6133 3.0667 1.9104 10 6 6.8355 3.0420 2.4779 11 8 7.6382 2.1932 2.1523 12 6 7.2051 4.0698 3.5163 13 8 8.5421 3.8360 3.9632 14 6 9.0339 4.6814 4.9068 15 6 10.3245 4.5122 5.3862 16 7 11.1658 3.4072 4.8745 17 8 12.2991 3.2595 5.2955 18 8 10.7251 2.6463 4.0318 19 6 10.8242 5.3764 6.3415 20 6 10.0388 6.4086 6.8199 21 6 10.5860 7.3493 7.8622 22 8 10.9371 6.6101 9.0337 23 14 9.2923 8.6184 8.2939 24 6 8.7519 6.5795 6.3433 25 6 8.2478 5.7183 5.3884 26 6 3.3754 1.3719 -0.7045 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.1162 0.7769 1.8439 31 1 2.2146 2.3513 1.9417 32 1 5.9383 2.1437 0.0553 33 1 5.3230 1.0707 1.3353 34 1 4.9712 3.7453 2.1711 35 1 6.5208 3.9947 4.3614 36 1 7.1368 5.0667 3.0810 37 1 11.8290 5.2453 6.7147 38 1 11.4709 7.8508 7.4703 39 1 11.2977 7.1531 9.7481 40 1 8.0811 7.9470 8.8297 41 1 9.8307 9.5714 9.2976 42 1 8.1405 7.3870 6.7183 43 1 7.2428 5.8525 5.0162 44 1 3.3383 1.8471 -1.6849 45 1 3.9097 0.4219 -0.7148 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12345242_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:30:11 Heat of formation + Delta-G solvation = -81.036393 kcal Electronic energy + Delta-G solvation = -30511.816800 eV Core-core repulsion = 25887.729548 eV Total energy + Delta-G solvation = -4624.087252 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.97276 -41.71692 -41.00557 -40.31084 -39.34291 -37.71103 -37.46219 -37.08064 -35.33814 -33.50672 -32.46108 -30.86386 -28.66437 -27.56015 -27.41510 -26.82792 -26.56322 -24.16733 -23.32924 -22.65105 -21.85005 -20.70758 -20.34430 -19.42497 -19.10805 -18.81617 -18.57393 -18.27982 -17.70704 -17.64693 -17.41720 -16.84612 -16.73245 -16.58111 -16.31188 -16.11336 -15.90510 -15.60749 -15.46291 -14.98025 -14.52768 -14.39712 -14.21220 -13.85600 -13.83509 -13.66527 -13.54733 -13.19351 -13.01977 -12.84596 -12.60559 -12.45971 -12.15675 -12.09268 -12.06142 -11.85279 -11.76606 -11.69175 -11.56652 -10.92955 -10.88399 -10.80068 -10.51517 -10.20761 -9.84348 -5.23959 -1.07719 -0.32542 0.42975 0.57949 0.99459 1.12203 1.34690 1.45560 1.71029 1.96305 2.22782 2.75938 2.89151 3.07410 3.12321 3.30861 3.39472 3.43729 3.51974 3.58424 3.60234 3.65446 3.65779 3.69455 3.76651 3.95369 4.07016 4.12709 4.19663 4.31864 4.33601 4.39168 4.47330 4.56694 4.59068 4.69523 4.72120 4.75002 4.75906 4.86366 4.96722 5.00258 5.13260 5.28842 5.48135 5.75138 6.19238 6.19852 6.26901 6.98683 7.06097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.060 3.940 4 H 0.088 0.912 5 C -0.152 4.152 6 C -0.124 4.124 7 H 0.100 0.900 8 C 0.134 3.866 9 N -0.727 5.727 10 C 0.512 3.488 11 O -0.496 6.496 12 C 0.031 3.969 13 O -0.253 6.253 14 C 0.200 3.800 15 C -0.075 4.075 16 N 0.029 4.971 17 O -0.178 6.178 18 O -0.118 6.118 19 C 0.010 3.990 20 C -0.110 4.110 21 C -0.074 4.074 22 O -0.535 6.535 23 Si 0.684 3.316 24 C -0.022 4.022 25 C -0.209 4.209 26 C -0.127 4.127 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.401 0.599 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.163 0.837 38 H 0.085 0.915 39 H 0.385 0.615 40 H -0.251 1.251 41 H -0.255 1.255 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.078 0.922 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 10.088 0.044 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.002 3.998 4 H 0.106 0.894 5 C -0.189 4.189 6 C -0.143 4.143 7 H 0.118 0.882 8 C 0.011 3.989 9 N -0.381 5.381 10 C 0.295 3.705 11 O -0.368 6.368 12 C -0.048 4.048 13 O -0.163 6.163 14 C 0.150 3.850 15 C -0.160 4.160 16 N 0.549 4.451 17 O -0.387 6.387 18 O -0.342 6.342 19 C -0.009 4.009 20 C -0.111 4.111 21 C -0.183 4.183 22 O -0.343 6.343 23 Si 0.584 3.416 24 C -0.040 4.040 25 C -0.228 4.228 26 C -0.165 4.165 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.235 0.765 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.180 0.820 38 H 0.103 0.897 39 H 0.234 0.766 40 H -0.176 1.176 41 H -0.179 1.179 42 H 0.167 0.833 43 H 0.175 0.825 44 H 0.097 0.903 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.000 9.489 0.244 13.080 hybrid contribution 0.207 0.187 1.059 1.095 sum -8.793 9.676 1.303 13.139 Atomic orbital electron populations 1.22816 0.80909 1.03073 0.99963 1.87966 1.19866 1.27126 1.94529 1.23721 0.93922 0.85579 0.96588 0.89368 1.23666 0.97065 1.01069 0.97138 1.22570 0.93559 1.00136 0.98026 0.88161 1.21385 0.94622 0.91981 0.90925 1.45765 1.14830 1.34455 1.43080 1.19810 0.82466 0.85751 0.82454 1.90873 1.48792 1.36420 1.60696 1.22730 0.83334 1.00099 0.98600 1.86503 1.29178 1.49334 1.51243 1.18680 0.90183 0.88853 0.87296 1.20552 0.91189 0.97057 1.07201 1.43324 1.00927 1.01038 0.99805 1.94548 1.03575 1.78331 1.62216 1.94698 1.76252 1.39271 1.23934 1.20795 1.01380 0.89391 0.89289 1.19141 0.94258 0.98150 0.99601 1.24770 1.07526 0.99261 0.86762 1.86588 1.85024 1.37154 1.25539 0.95263 0.78526 0.78812 0.88999 1.21186 0.93591 0.96542 0.92672 1.21233 1.01750 0.96909 1.02881 1.23208 0.95318 1.00276 0.97668 0.93901 0.89487 0.93985 0.88764 0.91066 0.90686 0.90657 0.76451 0.88093 0.87970 0.81954 0.89725 0.76571 1.17567 1.17938 0.83346 0.82501 0.90347 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.06 16 2 O -0.38 -0.46 10.72 -35.23 -0.38 -0.84 16 3 C 0.06 -0.08 4.31 -25.83 -0.11 -0.19 16 4 H 0.09 -0.24 7.87 -51.93 -0.41 -0.65 16 5 C -0.15 0.36 7.48 -25.83 -0.19 0.17 16 6 C -0.12 0.41 3.75 -89.81 -0.34 0.07 16 7 H 0.10 -0.48 8.14 -51.93 -0.42 -0.91 16 8 C 0.13 -0.19 5.50 -4.04 -0.02 -0.22 16 9 N -0.73 1.85 5.56 -60.29 -0.33 1.51 16 10 C 0.51 0.42 7.91 -10.98 -0.09 0.33 16 11 O -0.50 -3.30 16.50 -14.35 -0.24 -3.53 16 12 C 0.03 -0.07 5.22 36.01 0.19 0.12 16 13 O -0.25 -0.66 7.68 -49.79 -0.38 -1.04 16 14 C 0.20 0.25 6.67 -39.22 -0.26 -0.01 16 15 C -0.08 -0.26 6.87 -79.80 -0.55 -0.81 16 16 N 0.03 0.21 4.45 34.03 0.15 0.36 16 17 O -0.18 -1.38 18.45 -29.46 -0.54 -1.92 16 18 O -0.12 -1.07 17.24 -36.49 -0.63 -1.70 16 19 C 0.01 0.01 9.11 -39.60 -0.36 -0.35 16 20 C -0.11 0.10 5.42 -104.60 -0.57 -0.46 16 21 C -0.07 0.17 2.81 36.00 0.10 0.28 16 22 O -0.53 0.33 12.74 -35.23 -0.45 -0.12 16 23 Si 0.68 -2.48 29.78 -169.99 -5.06 -7.55 16 24 C -0.02 0.06 8.66 -39.61 -0.34 -0.28 16 25 C -0.21 0.57 9.04 -39.44 -0.36 0.21 16 26 C -0.13 0.24 7.47 -25.92 -0.19 0.05 16 27 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 28 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.04 -0.08 8.14 -51.93 -0.42 -0.51 16 30 H 0.09 -0.09 7.92 -51.93 -0.41 -0.50 16 31 H 0.07 -0.25 8.14 -51.92 -0.42 -0.67 16 32 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.08 0.01 7.87 -51.93 -0.41 -0.40 16 34 H 0.40 -2.44 8.47 -40.82 -0.35 -2.79 16 35 H 0.10 -0.54 7.67 -51.93 -0.40 -0.94 16 36 H 0.10 -0.60 7.65 -51.93 -0.40 -0.99 16 37 H 0.16 0.20 7.61 -52.49 -0.40 -0.20 16 38 H 0.08 -0.34 7.96 -51.93 -0.41 -0.75 16 39 H 0.39 -1.74 8.74 45.56 0.40 -1.34 16 40 H -0.25 0.21 7.11 56.52 0.40 0.62 16 41 H -0.25 0.29 7.11 56.52 0.40 0.69 16 42 H 0.15 -0.86 4.87 -52.49 -0.26 -1.11 16 43 H 0.16 -1.04 6.30 -52.48 -0.33 -1.37 16 44 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 45 H 0.10 -0.08 8.10 -51.93 -0.42 -0.50 16 LS Contribution 386.44 15.07 5.82 5.82 Total: 0.00 -13.52 386.44 -9.99 -23.50 By element: Atomic # 1 Polarization: -8.53 SS G_CDS: -5.95 Total: -14.47 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.00 Total: -0.02 kcal Atomic # 7 Polarization: 2.05 SS G_CDS: -0.18 Total: 1.87 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -2.62 Total: -9.15 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: -5.06 Total: -7.55 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -13.52 -9.99 -23.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.536 kcal (2) G-P(sol) polarization free energy of solvation -13.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds