Wall clock time and date at job start Sat Mar 6 2021 18:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42897 * 114.00521 * 2 1 4 4 H 1.09004 * 112.84798 * 341.20366 * 3 2 1 5 5 C 1.53954 * 113.66845 * 112.44167 * 3 2 1 6 6 C 1.53783 * 87.01969 * 139.93975 * 5 3 2 7 7 H 1.08996 * 113.61628 * 89.23347 * 6 5 3 8 8 C 1.53003 * 113.61141 * 220.04814 * 6 5 3 9 9 N 1.46500 * 109.47157 * 274.13626 * 8 6 5 10 10 C 1.34777 * 119.99928 * 179.97438 * 9 8 6 11 11 O 1.21275 * 119.99849 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00079 * 179.97438 * 10 9 8 13 13 O 1.42895 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.35903 * 117.00049 * 179.97438 * 13 12 10 15 15 C 1.38715 * 120.05514 * 179.97438 * 14 13 12 16 16 N 1.48006 * 120.02771 * 359.75008 * 15 14 13 17 17 O 1.21794 * 119.99979 * 179.97438 * 16 15 14 18 18 O 1.21800 * 119.99844 * 0.02562 * 16 15 14 19 19 C 1.38165 * 119.94424 * 179.72952 * 15 14 13 20 20 C 1.38247 * 120.05332 * 0.02562 * 19 15 14 21 21 C 1.50696 * 119.94295 * 179.97438 * 20 19 15 22 22 O 1.42900 * 109.47050 * 300.00218 * 21 20 19 23 23 Si 1.86298 * 109.47186 * 180.02562 * 21 20 19 24 24 C 1.38291 * 120.11211 * 359.95752 * 20 19 15 25 25 C 1.38119 * 120.05459 * 0.04752 * 24 20 19 26 26 C 1.53772 * 113.62091 * 210.00485 * 3 2 1 27 27 H 1.09000 * 109.47487 * 59.99703 * 1 2 3 28 28 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47085 * 299.99689 * 1 2 3 30 30 H 1.08993 * 113.61107 * 25.41579 * 5 3 2 31 31 H 1.09008 * 113.66621 * 254.46630 * 5 3 2 32 32 H 1.09000 * 109.47069 * 154.13500 * 8 6 5 33 33 H 1.08996 * 109.46849 * 34.13489 * 8 6 5 34 34 H 0.96994 * 120.00066 * 0.02562 * 9 8 6 35 35 H 1.09000 * 109.47059 * 60.00257 * 12 10 9 36 36 H 1.08999 * 109.46888 * 300.00512 * 12 10 9 37 37 H 1.07992 * 119.96889 * 180.02562 * 19 15 14 38 38 H 1.09001 * 109.47248 * 60.00111 * 21 20 19 39 39 H 0.96708 * 114.00072 * 179.97438 * 22 21 20 40 40 H 1.48493 * 110.00083 * 59.99987 * 23 21 20 41 41 H 1.48507 * 109.99895 * 181.31975 * 23 21 20 42 42 H 1.07999 * 119.97000 * 180.02562 * 24 20 19 43 43 H 1.08008 * 120.02409 * 180.02562 * 25 24 20 44 44 H 1.09006 * 113.61771 * 105.46563 * 26 3 2 45 45 H 1.08999 * 113.69105 * 334.57764 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7534 1.6510 1.3033 6 6 3.8227 2.3181 0.4221 7 1 3.6236 3.3694 0.2143 8 6 5.2543 2.0679 0.9005 9 7 5.6133 3.0667 1.9104 10 6 6.8355 3.0420 2.4779 11 8 7.6382 2.1932 2.1523 12 6 7.2051 4.0698 3.5163 13 8 8.5421 3.8360 3.9632 14 6 9.0339 4.6814 4.9068 15 6 10.3245 4.5122 5.3862 16 7 11.1658 3.4072 4.8745 17 8 12.2991 3.2595 5.2955 18 8 10.7251 2.6463 4.0318 19 6 10.8242 5.3764 6.3415 20 6 10.0388 6.4086 6.8199 21 6 10.5860 7.3493 7.8622 22 8 10.9371 6.6101 9.0337 23 14 9.2923 8.6184 8.2939 24 6 8.7519 6.5795 6.3433 25 6 8.2478 5.7183 5.3884 26 6 3.3754 1.3719 -0.7045 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.1162 0.7769 1.8439 31 1 2.2146 2.3513 1.9417 32 1 5.9383 2.1437 0.0553 33 1 5.3230 1.0707 1.3353 34 1 4.9712 3.7453 2.1711 35 1 6.5208 3.9947 4.3614 36 1 7.1368 5.0667 3.0810 37 1 11.8290 5.2453 6.7147 38 1 11.4709 7.8508 7.4703 39 1 11.2977 7.1531 9.7481 40 1 8.0811 7.9470 8.8297 41 1 9.8307 9.5714 9.2976 42 1 8.1405 7.3870 6.7183 43 1 7.2428 5.8525 5.0162 44 1 3.3383 1.8471 -1.6849 45 1 3.9097 0.4219 -0.7148 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:30:10 Heat of formation + Delta-G solvation = -86.518819 kcal Electronic energy + Delta-G solvation = -30512.054536 eV Core-core repulsion = 25887.729548 eV Total energy + Delta-G solvation = -4624.324988 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.29703 -41.77075 -40.94829 -40.24980 -39.31146 -37.63628 -37.55370 -37.39096 -35.34866 -33.52396 -32.35994 -30.77657 -28.51985 -27.82189 -27.31795 -26.66822 -26.41381 -24.15709 -23.25836 -22.69056 -21.81925 -20.57369 -20.41045 -19.78190 -19.13616 -18.74573 -18.62825 -18.47474 -17.63365 -17.58045 -17.37962 -16.76348 -16.58493 -16.44825 -16.24706 -15.95295 -15.85155 -15.53201 -15.40286 -14.90057 -14.40149 -14.29563 -14.09478 -13.78646 -13.74860 -13.56581 -13.41495 -13.14315 -12.88452 -12.71468 -12.69157 -12.42672 -12.34186 -12.27653 -12.13140 -11.95713 -11.89659 -11.70110 -11.40279 -11.00087 -10.82664 -10.61339 -10.40728 -10.18859 -9.76488 -4.92684 -1.30879 -0.23455 0.15987 0.35233 1.21869 1.26695 1.46779 1.63759 1.98417 2.03282 2.33202 2.90230 3.06589 3.22212 3.30988 3.46768 3.54626 3.57684 3.70622 3.71439 3.84570 3.86057 3.87642 3.96719 4.02665 4.13698 4.24487 4.32017 4.33320 4.47265 4.52066 4.55339 4.62799 4.67808 4.74992 4.83654 4.84847 4.86209 4.88126 5.03363 5.07842 5.15713 5.19243 5.26341 5.44191 5.76295 6.33572 6.42457 6.46322 6.53167 7.16775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.052 3.948 4 H 0.108 0.892 5 C -0.148 4.148 6 C -0.103 4.103 7 H 0.130 0.870 8 C 0.134 3.866 9 N -0.704 5.704 10 C 0.505 3.495 11 O -0.570 6.570 12 C 0.025 3.975 13 O -0.292 6.292 14 C 0.193 3.807 15 C -0.105 4.105 16 N 0.035 4.965 17 O -0.202 6.202 18 O -0.174 6.174 19 C -0.005 4.005 20 C -0.112 4.112 21 C -0.095 4.095 22 O -0.562 6.562 23 Si 0.788 3.212 24 C -0.006 4.006 25 C -0.187 4.187 26 C -0.135 4.135 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.424 0.576 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.399 0.601 40 H -0.280 1.280 41 H -0.292 1.292 42 H 0.188 0.812 43 H 0.209 0.791 44 H 0.087 0.913 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 14.094 0.830 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C -0.005 4.005 4 H 0.126 0.874 5 C -0.186 4.186 6 C -0.122 4.122 7 H 0.148 0.852 8 C 0.010 3.990 9 N -0.359 5.359 10 C 0.290 3.710 11 O -0.448 6.448 12 C -0.052 4.052 13 O -0.202 6.202 14 C 0.143 3.857 15 C -0.191 4.191 16 N 0.545 4.455 17 O -0.409 6.409 18 O -0.388 6.388 19 C -0.024 4.024 20 C -0.114 4.114 21 C -0.202 4.202 22 O -0.373 6.373 23 Si 0.690 3.310 24 C -0.024 4.024 25 C -0.205 4.205 26 C -0.173 4.173 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.262 0.738 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.117 0.883 39 H 0.250 0.750 40 H -0.207 1.207 41 H -0.219 1.219 42 H 0.204 0.796 43 H 0.226 0.774 44 H 0.106 0.894 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.257 13.474 0.978 18.241 hybrid contribution 1.151 -0.955 0.908 1.750 sum -11.106 12.518 1.886 16.841 Atomic orbital electron populations 1.22925 0.79945 1.03430 1.00859 1.87929 1.21172 1.28885 1.94747 1.23955 0.94182 0.85165 0.97223 0.87440 1.23600 0.97204 1.00776 0.97016 1.22497 0.91627 1.01282 0.96752 0.85191 1.21276 0.95745 0.91359 0.90615 1.45585 1.14342 1.34189 1.41800 1.20562 0.82354 0.85473 0.82565 1.90853 1.51088 1.39540 1.63288 1.23135 0.82055 1.00801 0.99189 1.86471 1.31656 1.50416 1.51673 1.18955 0.89634 0.89766 0.87316 1.20851 0.92141 0.96700 1.09368 1.43878 1.00965 1.01603 0.99085 1.94491 1.05027 1.79073 1.62349 1.94680 1.76545 1.41562 1.25978 1.20830 1.01580 0.90380 0.89596 1.19473 0.94979 0.97318 0.99589 1.25253 1.09476 0.99311 0.86156 1.86547 1.85461 1.38764 1.26554 0.94231 0.75014 0.75035 0.86703 1.21672 0.92665 0.96739 0.91296 1.21798 1.02998 0.94350 1.01401 1.23244 0.95382 0.99923 0.98776 0.92964 0.89558 0.93041 0.90906 0.89005 0.92139 0.93117 0.73782 0.84004 0.83305 0.83159 0.88289 0.74965 1.20657 1.21892 0.79561 0.77380 0.89431 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.41 -1.26 10.72 -148.98 -1.60 -2.85 16 3 C 0.05 -0.17 4.31 31.18 0.13 -0.03 16 4 H 0.11 -0.78 7.87 -2.38 -0.02 -0.80 16 5 C -0.15 0.82 7.48 31.18 0.23 1.05 16 6 C -0.10 0.77 3.75 -10.27 -0.04 0.73 16 7 H 0.13 -1.67 8.14 -2.39 -0.02 -1.69 16 8 C 0.13 -0.27 5.50 86.38 0.47 0.20 16 9 N -0.70 4.26 5.56 -463.06 -2.57 1.69 16 10 C 0.50 0.92 7.91 87.66 0.69 1.61 16 11 O -0.57 -9.33 16.50 16.02 0.26 -9.07 16 12 C 0.02 -0.17 5.22 71.24 0.37 0.20 16 13 O -0.29 -1.61 7.68 -63.43 -0.49 -2.10 16 14 C 0.19 0.37 6.67 22.51 0.15 0.52 16 15 C -0.11 -0.91 6.87 36.47 0.25 -0.66 16 16 N 0.03 0.63 4.45 -46.24 -0.21 0.42 16 17 O -0.20 -3.99 18.45 18.89 0.35 -3.64 16 18 O -0.17 -4.00 17.24 25.61 0.44 -3.56 16 19 C 0.00 -0.02 9.11 22.25 0.20 0.18 16 20 C -0.11 0.37 5.42 -19.85 -0.11 0.26 16 21 C -0.10 0.59 2.81 71.23 0.20 0.79 16 22 O -0.56 0.87 12.74 -148.98 -1.90 -1.03 16 23 Si 0.79 -7.94 29.78 68.60 2.04 -5.89 16 24 C -0.01 0.06 8.66 22.25 0.19 0.25 16 25 C -0.19 1.77 9.04 22.36 0.20 1.97 16 26 C -0.14 0.46 7.47 31.12 0.23 0.69 16 27 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.07 -0.06 7.92 -2.39 -0.02 -0.08 16 31 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 32 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.05 0.16 7.87 -2.39 -0.02 0.14 16 34 H 0.42 -6.50 8.47 -92.71 -0.79 -7.29 16 35 H 0.14 -2.17 7.67 -2.39 -0.02 -2.19 16 36 H 0.15 -2.46 7.65 -2.39 -0.02 -2.47 16 37 H 0.15 0.78 7.61 -2.91 -0.02 0.76 16 38 H 0.10 -0.92 7.96 -2.39 -0.02 -0.94 16 39 H 0.40 -3.70 8.74 -74.05 -0.65 -4.35 16 40 H -0.28 1.40 7.11 99.48 0.71 2.11 16 41 H -0.29 1.13 7.11 99.48 0.71 1.83 16 42 H 0.19 -3.21 4.87 -2.91 -0.01 -3.22 16 43 H 0.21 -4.21 6.30 -2.91 -0.02 -4.23 16 44 H 0.09 -0.47 8.14 -2.38 -0.02 -0.49 16 45 H 0.08 0.06 8.10 -2.39 -0.02 0.04 16 Total: 0.00 -42.00 386.44 0.42 -41.58 By element: Atomic # 1 Polarization: -24.15 SS G_CDS: -0.34 Total: -24.49 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 4.42 Total: 8.95 kcal Atomic # 7 Polarization: 4.89 SS G_CDS: -2.78 Total: 2.11 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -2.93 Total: -22.26 kcal Atomic # 14 Polarization: -7.94 SS G_CDS: 2.04 Total: -5.89 kcal Total: -42.00 0.42 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.934 kcal (2) G-P(sol) polarization free energy of solvation -42.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds