Wall clock time and date at job start Sat Mar 6 2021 18:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35983 * 116.99426 * 2 1 4 4 C 1.38678 * 119.99432 * 179.97438 * 3 2 1 5 5 C 1.38155 * 119.99825 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.00209 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47345 * 254.97718 * 6 5 4 8 8 Si 1.86304 * 109.46811 * 14.97609 * 6 5 4 9 9 C 1.38679 * 120.00242 * 359.97438 * 5 4 3 10 10 O 1.35976 * 120.00284 * 179.97438 * 9 5 4 11 11 C 1.42897 * 117.00220 * 179.97438 * 10 9 5 12 12 C 1.50702 * 109.47405 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99549 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99813 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47283 * 180.02562 * 15 14 12 17 17 H 1.08999 * 112.84933 * 316.19853 * 16 15 14 18 18 C 1.53781 * 113.61503 * 185.00012 * 16 15 14 19 19 C 1.53786 * 87.17350 * 219.89414 * 18 16 15 20 20 H 1.09000 * 113.60973 * 270.92699 * 19 18 16 21 21 O 1.42891 * 113.61586 * 140.02292 * 19 18 16 22 22 C 1.42903 * 114.00062 * 149.99622 * 21 19 18 23 23 C 1.53781 * 113.69221 * 87.46423 * 16 15 14 24 24 C 1.38723 * 119.99727 * 0.27802 * 9 5 4 25 25 C 1.38115 * 119.99674 * 359.44720 * 24 9 5 26 26 H 1.09000 * 109.47056 * 60.00567 * 1 2 3 27 27 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46848 * 300.00124 * 1 2 3 29 29 H 1.07994 * 120.00209 * 0.04294 * 4 3 2 30 30 H 1.09000 * 109.47738 * 134.97326 * 6 5 4 31 31 H 0.96694 * 114.00127 * 300.00139 * 7 6 5 32 32 H 1.48501 * 110.00187 * 60.00587 * 8 6 5 33 33 H 1.48504 * 109.99915 * 181.31749 * 8 6 5 34 34 H 1.09000 * 109.46825 * 60.00088 * 11 10 9 35 35 H 1.08996 * 109.47449 * 300.00915 * 11 10 9 36 36 H 0.97001 * 120.00396 * 0.02562 * 14 12 11 37 37 H 1.09000 * 109.47315 * 59.99868 * 15 14 12 38 38 H 1.09001 * 109.46863 * 300.00267 * 15 14 12 39 39 H 1.09002 * 113.61445 * 334.48413 * 18 16 15 40 40 H 1.09002 * 113.61408 * 105.30144 * 18 16 15 41 41 H 1.09003 * 109.46699 * 60.00030 * 22 21 19 42 42 H 1.09002 * 109.47245 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.47037 * 300.00188 * 22 21 19 44 44 H 1.09005 * 113.61471 * 254.54353 * 23 16 15 45 45 H 1.09003 * 113.61469 * 25.44131 * 23 16 15 46 46 H 1.07990 * 119.99902 * 179.70400 * 24 9 5 47 47 H 1.07998 * 119.99688 * 180.25545 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4312 1.2843 0.0005 5 6 4.0584 2.5152 0.0011 6 6 5.5633 2.5942 0.0011 7 8 6.0208 2.9673 1.3025 8 14 6.2723 0.9324 -0.4536 9 6 3.3031 3.6783 0.0005 10 8 3.9204 4.8899 0.0016 11 6 3.0804 6.0460 0.0004 12 6 3.9346 7.2875 0.0012 13 8 5.1435 7.1918 0.0022 14 7 3.3549 8.5042 0.0008 15 6 4.1852 9.7112 0.0010 16 6 3.2859 10.9490 0.0011 17 1 2.4506 10.8653 -0.6942 18 6 4.0594 12.2724 -0.1215 19 6 3.0755 12.8546 0.9071 20 1 2.1828 13.2910 0.4590 21 8 3.6930 13.7142 1.8671 22 6 2.8357 14.7458 2.3601 23 6 2.8722 11.4121 1.4080 24 6 1.9178 3.6057 0.0053 25 6 1.2908 2.3750 -0.0010 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0194 0.3786 0.0003 30 1 5.8882 3.3389 -0.7256 31 1 5.6901 3.8242 1.6049 32 1 5.8041 0.5330 -1.8051 33 1 7.7560 0.9885 -0.4262 34 1 2.4498 6.0378 0.8894 35 1 2.4524 6.0379 -0.8904 36 1 2.3879 8.5808 0.0004 37 1 4.8149 9.7193 -0.8887 38 1 4.8141 9.7194 0.8912 39 1 5.0857 12.2135 0.2408 40 1 3.9840 12.7325 -1.1068 41 1 1.9671 14.2969 2.8419 42 1 3.3785 15.3548 3.0830 43 1 2.5077 15.3727 1.5309 44 1 1.8373 11.1783 1.6579 45 1 3.5740 11.1179 2.1885 46 1 1.3296 4.5113 0.0097 47 1 0.2123 2.3185 -0.0014 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_4974302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:30:23 Heat of formation + Delta-G solvation = -128.328972 kcal Electronic energy + Delta-G solvation = -28794.615258 eV Core-core repulsion = 24525.273870 eV Total energy + Delta-G solvation = -4269.341388 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83800 -41.06908 -40.38483 -39.74692 -38.15910 -37.46418 -36.93156 -35.38861 -32.82682 -31.31716 -30.22898 -28.45529 -27.91624 -27.23810 -26.65178 -26.59503 -23.92994 -23.13537 -22.41698 -21.82205 -20.55305 -19.54122 -18.81010 -18.66820 -18.08619 -17.65870 -17.54426 -17.37414 -16.85417 -16.65903 -16.56302 -16.23225 -16.07364 -15.85095 -15.66344 -15.46344 -15.29177 -14.97622 -14.45669 -14.34399 -14.12607 -14.07199 -13.61173 -13.53658 -13.44613 -13.42884 -13.04587 -12.89953 -12.51480 -12.45979 -12.30896 -12.04143 -11.98452 -11.73398 -11.44983 -11.44458 -11.31020 -11.24028 -11.00269 -10.43170 -10.23760 -10.10084 -8.82574 -4.94289 0.06146 0.32991 1.32762 1.41111 1.43959 1.57361 1.90900 2.34886 2.53756 2.56386 2.87772 3.39061 3.50206 3.53662 3.62944 3.74165 3.80523 3.82182 3.84891 3.94869 4.05699 4.08732 4.10117 4.13111 4.20707 4.27506 4.28281 4.45099 4.45221 4.45695 4.53428 4.63030 4.69410 4.71950 4.80053 4.80253 4.81975 4.85378 4.97011 4.99922 5.11541 5.12186 5.20465 5.21628 5.39439 5.41992 6.12250 6.30669 6.39858 6.45807 6.50551 7.09090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.091 3.909 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.082 4.082 7 O -0.545 6.545 8 Si 0.812 3.188 9 C 0.089 3.911 10 O -0.317 6.317 11 C 0.039 3.961 12 C 0.510 3.490 13 O -0.575 6.575 14 N -0.706 5.706 15 C 0.134 3.866 16 C -0.105 4.105 17 H 0.127 0.873 18 C -0.134 4.134 19 C 0.052 3.948 20 H 0.107 0.893 21 O -0.407 6.407 22 C 0.024 3.976 23 C -0.148 4.148 24 C -0.159 4.159 25 C -0.161 4.161 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.061 0.939 31 H 0.371 0.629 32 H -0.264 1.264 33 H -0.295 1.295 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.422 0.578 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.168 0.832 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.821 2.854 -0.432 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.046 3.954 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.190 4.190 7 O -0.351 6.351 8 Si 0.713 3.287 9 C 0.044 3.956 10 O -0.231 6.231 11 C -0.039 4.039 12 C 0.296 3.704 13 O -0.453 6.453 14 N -0.361 5.361 15 C 0.011 3.989 16 C -0.124 4.124 17 H 0.145 0.855 18 C -0.172 4.172 19 C -0.005 4.005 20 H 0.125 0.875 21 O -0.326 6.326 22 C -0.072 4.072 23 C -0.186 4.186 24 C -0.177 4.177 25 C -0.180 4.180 26 H 0.085 0.915 27 H 0.133 0.867 28 H 0.086 0.914 29 H 0.169 0.831 30 H 0.079 0.921 31 H 0.220 0.780 32 H -0.189 1.189 33 H -0.222 1.222 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.260 0.740 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.185 0.815 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.711 1.638 -0.963 10.878 hybrid contribution -0.883 2.191 -0.322 2.384 sum -11.594 3.830 -1.285 12.278 Atomic orbital electron populations 1.23358 0.76368 1.05626 1.02373 1.86091 1.23408 1.26299 1.88929 1.18976 0.91918 0.85380 0.99175 1.20181 0.92462 0.96754 1.04258 1.19451 0.95972 0.91043 1.05548 1.25528 0.92928 1.12527 0.87973 1.86657 1.74224 1.42227 1.32024 0.92229 0.76203 0.78995 0.81277 1.18809 0.91783 0.84214 1.00794 1.86084 1.35615 1.11976 1.89452 1.22712 0.92548 0.81748 1.06889 1.20581 0.88316 0.85587 0.75912 1.90776 1.16885 1.87455 1.50198 1.45649 1.11591 1.04134 1.74703 1.21287 0.93340 0.82753 1.01542 1.22493 0.99260 0.91941 0.98672 0.85507 1.23242 0.99333 0.94983 0.99626 1.23951 0.96861 0.89662 0.90035 0.87530 1.87927 1.40465 1.44427 1.59787 1.22933 0.94911 0.90064 0.99269 1.23621 1.02907 0.95489 0.96562 1.21376 0.91992 1.00062 1.04307 1.21424 1.01613 0.90898 1.04023 0.91521 0.86743 0.91400 0.83065 0.92139 0.78022 1.18905 1.22239 0.85558 0.85820 0.74013 0.92145 0.92777 0.90361 0.89499 0.93073 0.89444 0.92990 0.89239 0.90695 0.81452 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.69 10.50 -93.36 -0.98 -1.67 16 3 C 0.09 0.24 6.68 22.49 0.15 0.39 16 4 C -0.12 -0.54 8.59 22.36 0.19 -0.35 16 5 C -0.12 -0.75 5.28 -19.78 -0.10 -0.86 16 6 C -0.08 -0.72 2.33 71.24 0.17 -0.55 16 7 O -0.55 -5.78 12.65 -148.98 -1.89 -7.66 16 8 Si 0.81 4.68 30.17 68.60 2.07 6.75 16 9 C 0.09 0.32 6.62 22.49 0.15 0.47 16 10 O -0.32 -1.56 8.56 -74.25 -0.64 -2.19 16 11 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 12 C 0.51 1.14 7.91 87.66 0.69 1.84 16 13 O -0.57 -8.33 16.50 16.02 0.26 -8.07 16 14 N -0.71 3.46 5.56 -463.06 -2.57 0.89 16 15 C 0.13 -0.25 5.51 86.38 0.48 0.23 16 16 C -0.11 0.72 3.75 -10.27 -0.04 0.68 16 17 H 0.13 -1.48 8.14 -2.39 -0.02 -1.50 16 18 C -0.13 0.43 7.46 31.12 0.23 0.66 16 19 C 0.05 -0.15 4.32 31.21 0.13 -0.01 16 20 H 0.11 -0.72 7.87 -2.39 -0.02 -0.73 16 21 O -0.41 -1.26 10.72 -148.98 -1.60 -2.86 16 22 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 23 C -0.15 0.74 7.48 31.21 0.23 0.97 16 24 C -0.16 0.40 9.03 22.36 0.20 0.60 16 25 C -0.16 0.33 9.03 22.35 0.20 0.53 16 26 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 27 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H 0.07 -0.56 7.66 -2.39 -0.02 -0.58 16 29 H 0.15 0.27 5.13 -2.91 -0.01 0.26 16 30 H 0.06 0.69 7.82 -2.39 -0.02 0.67 16 31 H 0.37 3.05 8.60 -74.06 -0.64 2.42 16 32 H -0.26 -1.99 7.11 99.48 0.71 -1.28 16 33 H -0.29 -3.59 7.11 99.48 0.71 -2.88 16 34 H 0.13 -1.36 7.65 -2.39 -0.02 -1.38 16 35 H 0.12 -1.29 7.67 -2.39 -0.02 -1.31 16 36 H 0.42 -5.51 8.47 -92.71 -0.79 -6.29 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.05 0.14 7.85 -2.39 -0.02 0.13 16 39 H 0.08 0.04 8.10 -2.39 -0.02 0.02 16 40 H 0.09 -0.45 8.14 -2.39 -0.02 -0.46 16 41 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 45 H 0.07 -0.05 7.90 -2.39 -0.02 -0.07 16 46 H 0.17 -1.73 6.29 -2.92 -0.02 -1.75 16 47 H 0.16 -1.29 6.29 -2.91 -0.02 -1.30 16 Total: 0.00 -26.62 388.85 -0.32 -26.94 By element: Atomic # 1 Polarization: -18.74 SS G_CDS: -0.38 Total: -19.12 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 5.40 Total: 6.99 kcal Atomic # 7 Polarization: 3.46 SS G_CDS: -2.57 Total: 0.89 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -4.83 Total: -22.45 kcal Atomic # 14 Polarization: 4.68 SS G_CDS: 2.07 Total: 6.75 kcal Total: -26.62 -0.32 -26.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_4974302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.387 kcal (2) G-P(sol) polarization free energy of solvation -26.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds