Wall clock time and date at job start Sat Mar 6 2021 18:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35992 * 117.00122 * 2 1 4 4 C 1.39152 * 120.07489 * 179.97438 * 3 2 1 5 5 O 1.35988 * 120.07268 * 0.02562 * 4 3 2 6 6 C 1.42900 * 116.99929 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47065 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00194 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99857 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99953 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47148 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.84738 * 316.19875 * 11 10 9 13 13 C 1.53782 * 113.61259 * 185.00373 * 11 10 9 14 14 C 1.53784 * 87.07948 * 219.93809 * 13 11 10 15 15 H 1.09002 * 113.60927 * 270.80203 * 14 13 11 16 16 O 1.42899 * 113.61467 * 139.98237 * 14 13 11 17 17 C 1.42905 * 113.99778 * 150.00011 * 16 14 13 18 18 C 1.53777 * 113.68887 * 87.46922 * 11 10 9 19 19 C 1.38565 * 119.85162 * 180.29997 * 4 3 2 20 20 C 1.38242 * 120.00073 * 359.46555 * 19 4 3 21 21 C 1.38253 * 120.14515 * 0.51234 * 20 19 4 22 22 C 1.50706 * 119.92427 * 179.74258 * 21 20 19 23 23 O 1.42892 * 109.47062 * 245.02020 * 22 21 20 24 24 Si 1.86291 * 109.47126 * 5.02516 * 22 21 20 25 25 C 1.38238 * 120.14915 * 359.76615 * 21 20 19 26 26 H 1.09008 * 109.46809 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47230 * 299.99995 * 1 2 3 28 28 H 1.09004 * 109.47234 * 60.00338 * 1 2 3 29 29 H 1.09002 * 109.46999 * 60.00139 * 6 5 4 30 30 H 1.08990 * 109.47680 * 300.00344 * 6 5 4 31 31 H 0.96995 * 120.00242 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.46897 * 60.00552 * 10 9 7 33 33 H 1.08999 * 109.47471 * 300.01123 * 10 9 7 34 34 H 1.08996 * 113.61852 * 105.38375 * 13 11 10 35 35 H 1.09007 * 113.68961 * 334.49158 * 13 11 10 36 36 H 1.09001 * 109.47103 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.47054 * 299.99711 * 17 16 14 38 38 H 1.09000 * 109.47187 * 59.99767 * 17 16 14 39 39 H 1.09000 * 113.61947 * 25.43867 * 18 11 10 40 40 H 1.09003 * 113.61445 * 254.54048 * 18 11 10 41 41 H 1.08004 * 119.99895 * 179.70058 * 19 4 3 42 42 H 1.08001 * 119.92975 * 180.26148 * 20 19 4 43 43 H 1.09007 * 109.46352 * 125.02573 * 22 21 20 44 44 H 0.96705 * 114.00075 * 60.00253 * 23 22 21 45 45 H 1.48503 * 109.99741 * 179.97438 * 24 22 21 46 46 H 1.48500 * 110.00258 * 301.31377 * 24 22 21 47 47 H 1.07994 * 120.00738 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1795 0.1477 0.0005 6 6 5.6003 0.3007 0.0005 7 6 6.2519 -1.0582 0.0012 8 8 5.5670 -2.0591 0.0011 9 7 7.5957 -1.1611 0.0008 10 6 8.2292 -2.4821 0.0008 11 6 9.7504 -2.3182 0.0009 12 1 10.0936 -1.5521 -0.6943 13 6 10.5131 -3.6479 -0.1219 14 6 11.5059 -3.0829 0.9078 15 1 12.3298 -2.5271 0.4603 16 8 11.9431 -4.0454 1.8693 17 6 13.2636 -3.8141 2.3641 18 6 10.3579 -2.1903 1.4078 19 6 4.0602 2.5233 0.0068 20 6 3.3029 3.6798 0.0014 21 6 1.9223 3.6057 0.0004 22 6 1.1016 4.8696 0.0003 23 8 0.3641 4.9588 1.2210 24 14 2.2309 6.3434 -0.1521 25 6 1.2931 2.3748 -0.0001 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 5.9065 0.8505 0.8906 30 1 5.9066 0.8505 -0.8893 31 1 8.1435 -0.3606 0.0004 32 1 7.9227 -3.0320 -0.8890 33 1 7.9231 -3.0318 0.8909 34 1 10.9508 -3.8109 -1.1067 35 1 9.9521 -4.5097 0.2398 36 1 13.5210 -4.5873 3.0880 37 1 13.9720 -3.8420 1.5361 38 1 13.3054 -2.8369 2.8452 39 1 9.7534 -2.6525 2.1882 40 1 10.6703 -1.1764 1.6579 41 1 5.1385 2.5840 0.0121 42 1 3.7907 4.6434 0.0020 43 1 0.4096 4.8534 -0.8419 44 1 0.9171 4.9777 2.0141 45 1 1.4335 7.5962 -0.1540 46 1 3.1999 6.3593 0.9730 47 1 0.2146 2.3196 -0.0005 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:30:32 Heat of formation + Delta-G solvation = -124.236243 kcal Electronic energy + Delta-G solvation = -28537.998321 eV Core-core repulsion = 24268.834407 eV Total energy + Delta-G solvation = -4269.163914 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.82075 -41.05007 -40.31568 -39.29155 -38.92431 -37.45530 -37.01491 -35.35582 -32.11747 -31.49308 -30.48757 -28.60527 -28.25678 -27.25524 -26.64180 -26.14753 -23.76243 -23.14966 -22.52804 -21.77763 -20.53234 -19.78872 -18.72497 -18.40936 -18.06871 -17.57164 -17.52415 -17.20156 -16.79362 -16.74887 -16.54042 -16.14676 -16.13318 -15.89851 -15.80363 -15.71053 -15.38160 -15.02307 -14.62066 -14.31997 -14.22892 -13.78437 -13.58937 -13.54332 -13.42949 -13.41917 -12.87422 -12.63503 -12.58666 -12.43426 -12.17077 -12.13563 -11.99576 -11.96281 -11.70940 -11.61345 -11.41334 -10.98512 -10.60762 -10.41434 -10.20108 -9.78681 -8.92142 -4.87814 0.16862 0.28028 1.33826 1.45519 1.49328 1.63749 2.00033 2.31038 2.55508 2.57228 2.89973 3.41170 3.43294 3.55036 3.65156 3.67788 3.83156 3.84566 3.86466 3.93021 4.04942 4.11601 4.12938 4.14521 4.28355 4.30330 4.31445 4.35956 4.47044 4.55090 4.57283 4.64542 4.65763 4.66751 4.74244 4.82708 4.84184 4.87425 5.01056 5.02656 5.12687 5.14689 5.25074 5.37166 5.43151 5.59674 5.96927 6.32729 6.41610 6.49516 6.54755 7.14376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.085 3.915 5 O -0.315 6.315 6 C 0.036 3.964 7 C 0.509 3.491 8 O -0.577 6.577 9 N -0.705 5.705 10 C 0.134 3.866 11 C -0.104 4.104 12 H 0.129 0.871 13 C -0.134 4.134 14 C 0.053 3.947 15 H 0.108 0.892 16 O -0.407 6.407 17 C 0.024 3.976 18 C -0.149 4.149 19 C -0.159 4.159 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.086 4.086 23 O -0.551 6.551 24 Si 0.778 3.222 25 C -0.152 4.152 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.423 0.577 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.176 0.824 42 H 0.158 0.842 43 H 0.122 0.878 44 H 0.386 0.614 45 H -0.307 1.307 46 H -0.273 1.273 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 6.690 -2.491 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.229 6.229 6 C -0.042 4.042 7 C 0.295 3.705 8 O -0.456 6.456 9 N -0.360 5.360 10 C 0.010 3.990 11 C -0.123 4.123 12 H 0.147 0.853 13 C -0.172 4.172 14 C -0.005 4.005 15 H 0.125 0.875 16 O -0.327 6.327 17 C -0.072 4.072 18 C -0.187 4.187 19 C -0.177 4.177 20 C -0.129 4.129 21 C -0.116 4.116 22 C -0.194 4.194 23 O -0.359 6.359 24 Si 0.682 3.318 25 C -0.170 4.170 26 H 0.129 0.871 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.261 0.739 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.194 0.806 42 H 0.175 0.825 43 H 0.139 0.861 44 H 0.235 0.765 45 H -0.236 1.236 46 H -0.199 1.199 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.148 6.126 -2.470 9.733 hybrid contribution -0.399 -0.167 1.278 1.349 sum 6.749 5.959 -1.191 9.082 Atomic orbital electron populations 1.23283 0.76824 1.05188 1.02102 1.86191 1.22994 1.26684 1.89093 1.18685 0.89937 0.85609 1.02705 1.18606 0.88204 0.86557 1.02692 1.86224 1.18294 1.29114 1.89281 1.22776 0.79285 0.95008 1.07127 1.20634 0.83073 0.90926 0.75865 1.90778 1.64252 1.40357 1.50205 1.45633 1.05078 1.10542 1.74754 1.21291 0.92075 0.84123 1.01497 1.22500 0.91660 0.99484 0.98641 0.85333 1.23245 0.96980 0.97310 0.99647 1.23914 0.95883 0.90671 0.90004 0.87465 1.87931 1.32917 1.52142 1.59680 1.22931 0.82962 1.02025 0.99255 1.23577 0.97454 1.01018 0.96610 1.21380 1.02279 0.89270 1.04814 1.21046 0.92434 0.99101 1.00270 1.20118 0.94445 0.94689 1.02379 1.25325 1.02232 1.02277 0.89546 1.86571 1.37398 1.95599 1.16326 0.93955 0.77287 0.72318 0.88190 1.21022 1.00495 0.90545 1.04984 0.87140 0.91972 0.91521 0.85593 0.85078 0.73906 0.92077 0.92980 0.89389 0.90410 0.89486 0.92955 0.93095 0.90807 0.89205 0.80642 0.82470 0.86062 0.76461 1.23596 1.19947 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.34 -3.88 10.28 -79.59 -0.82 -4.70 16 3 C 0.08 0.63 6.70 22.57 0.15 0.78 16 4 C 0.08 0.48 6.70 22.57 0.15 0.63 16 5 O -0.32 -2.82 9.45 -67.01 -0.63 -3.45 16 6 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 7 C 0.51 2.17 7.91 87.66 0.69 2.86 16 8 O -0.58 -10.05 16.50 16.01 0.26 -9.79 16 9 N -0.71 2.71 5.56 -463.05 -2.57 0.14 16 10 C 0.13 -0.13 5.52 86.38 0.48 0.34 16 11 C -0.10 0.67 3.75 -10.27 -0.04 0.63 16 12 H 0.13 -1.48 8.14 -2.39 -0.02 -1.50 16 13 C -0.13 0.40 7.47 31.12 0.23 0.63 16 14 C 0.05 -0.14 4.31 31.12 0.13 0.00 16 15 H 0.11 -0.71 7.87 -2.39 -0.02 -0.73 16 16 O -0.41 -1.37 10.71 -148.98 -1.60 -2.97 16 17 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 18 C -0.15 0.68 7.46 31.12 0.23 0.91 16 19 C -0.16 0.42 9.04 22.35 0.20 0.63 16 20 C -0.11 0.37 8.66 22.27 0.19 0.56 16 21 C -0.12 0.00 5.35 -19.86 -0.11 -0.11 16 22 C -0.09 0.12 2.80 71.24 0.20 0.32 16 23 O -0.55 -1.18 12.83 -148.98 -1.91 -3.09 16 24 Si 0.78 -3.27 29.88 68.60 2.05 -1.22 16 25 C -0.15 -0.59 8.67 22.35 0.19 -0.39 16 26 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 27 H 0.06 0.06 7.66 -2.39 -0.02 0.04 16 28 H 0.07 0.00 7.66 -2.38 -0.02 -0.01 16 29 H 0.13 -1.17 7.65 -2.39 -0.02 -1.19 16 30 H 0.13 -1.32 7.68 -2.39 -0.02 -1.34 16 31 H 0.42 -5.28 8.47 -92.71 -0.79 -6.06 16 32 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.05 0.20 7.85 -2.39 -0.02 0.18 16 34 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.08 0.07 8.10 -2.38 -0.02 0.05 16 36 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.05 -0.23 8.14 -2.38 -0.02 -0.25 16 38 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.07 -0.01 7.90 -2.39 -0.02 -0.03 16 40 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.18 -1.94 6.30 -2.91 -0.02 -1.96 16 42 H 0.16 -1.38 4.83 -2.91 -0.01 -1.39 16 43 H 0.12 -0.31 7.96 -2.38 -0.02 -0.33 16 44 H 0.39 -1.35 8.70 -74.05 -0.64 -1.99 16 45 H -0.31 -1.31 7.11 99.48 0.71 -0.60 16 46 H -0.27 0.51 7.00 99.48 0.70 1.21 16 47 H 0.14 0.34 6.30 -2.91 -0.02 0.32 16 Total: 0.00 -31.62 389.61 -0.19 -31.81 By element: Atomic # 1 Polarization: -16.76 SS G_CDS: -0.40 Total: -17.16 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.43 Total: 10.44 kcal Atomic # 7 Polarization: 2.71 SS G_CDS: -2.57 Total: 0.14 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -4.70 Total: -24.00 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: 2.05 Total: -1.22 kcal Total: -31.62 -0.19 -31.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.427 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds