Wall clock time and date at job start Sat Mar 6 2021 18:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35963 * 116.99931 * 2 1 4 4 C 1.39455 * 120.11807 * 180.02562 * 3 2 1 5 5 O 1.34774 * 133.24375 * 359.69284 * 4 3 2 6 6 C 1.34924 * 110.84338 * 180.02562 * 5 4 3 7 7 C 1.46994 * 125.14015 * 179.97438 * 6 5 4 8 8 O 1.21655 * 119.99732 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00051 * 0.03368 * 7 6 5 10 10 C 1.46500 * 120.00025 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47274 * 179.97438 * 10 9 7 12 12 H 1.09005 * 112.84439 * 316.19264 * 11 10 9 13 13 C 1.53778 * 113.61704 * 184.99889 * 11 10 9 14 14 C 1.53776 * 87.08138 * 220.01788 * 13 11 10 15 15 H 1.08997 * 113.61492 * 270.88340 * 14 13 11 16 16 O 1.42902 * 113.61526 * 140.06407 * 14 13 11 17 17 C 1.42900 * 114.00135 * 150.00042 * 16 14 13 18 18 C 1.53780 * 87.08305 * 25.43201 * 14 13 11 19 19 C 1.35814 * 109.71846 * 0.02562 * 6 5 4 20 20 C 1.40610 * 119.13490 * 179.72259 * 4 3 2 21 21 C 1.39770 * 120.11997 * 359.97438 * 20 4 3 22 22 C 1.50701 * 120.09539 * 179.97438 * 21 20 4 23 23 O 1.42897 * 109.47329 * 284.99857 * 22 21 20 24 24 Si 1.86299 * 109.47347 * 164.99554 * 22 21 20 25 25 C 1.36633 * 119.81484 * 359.97438 * 21 20 4 26 26 C 1.38260 * 120.12286 * 359.72085 * 3 2 1 27 27 H 1.09001 * 109.47163 * 300.00446 * 1 2 3 28 28 H 1.08999 * 109.47205 * 60.00351 * 1 2 3 29 29 H 1.08996 * 109.47226 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99904 * 359.97438 * 9 7 6 31 31 H 1.09004 * 109.46773 * 299.99216 * 10 9 7 32 32 H 1.09002 * 109.47302 * 59.99002 * 10 9 7 33 33 H 1.09005 * 113.61132 * 334.56711 * 13 11 10 34 34 H 1.09000 * 113.61547 * 105.38290 * 13 11 10 35 35 H 1.08997 * 109.47233 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.47070 * 300.00019 * 17 16 14 37 37 H 1.08998 * 109.47391 * 59.99379 * 17 16 14 38 38 H 1.09003 * 113.61282 * 220.01895 * 18 14 13 39 39 H 1.08999 * 113.61980 * 89.11678 * 18 14 13 40 40 H 1.08002 * 126.95200 * 180.02562 * 19 6 5 41 41 H 1.09007 * 109.46940 * 44.99852 * 22 21 20 42 42 H 0.96701 * 113.99774 * 300.00290 * 23 22 21 43 43 H 1.48500 * 110.00122 * 58.68229 * 24 22 21 44 44 H 1.48499 * 109.99957 * 180.02562 * 24 22 21 45 45 H 1.08000 * 119.75313 * 180.02562 * 25 21 20 46 46 H 1.07994 * 119.65963 * 0.27409 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2873 -0.0005 5 8 4.4141 0.3573 0.0041 6 6 5.6317 0.9385 0.0016 7 6 6.9131 0.2183 0.0059 8 8 7.9596 0.8387 0.0035 9 7 6.9286 -1.1294 0.0122 10 6 8.2057 -1.8472 0.0171 11 6 7.9435 -3.3545 0.0245 12 1 7.1561 -3.6437 0.7207 13 6 9.2207 -4.2014 0.1528 14 6 8.5942 -5.1595 -0.8740 15 1 7.9843 -5.9431 -0.4246 16 8 9.5283 -5.6635 -1.8309 17 6 9.2119 -6.9682 -2.3206 18 6 7.7787 -3.9581 -1.3803 19 6 5.4945 2.2897 -0.0044 20 6 4.0555 2.5509 -0.0065 21 6 3.2767 3.7115 -0.0123 22 6 3.9383 5.0655 -0.0181 23 8 4.4598 5.3464 1.2823 24 14 2.6869 6.3662 -0.4796 25 6 1.9137 3.6150 -0.0127 26 6 1.2957 2.3726 -0.0058 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 6.0942 -1.6240 0.0144 31 1 8.7751 -1.5816 -0.8737 32 1 8.7733 -1.5730 0.9063 33 1 10.1168 -3.6977 -0.2100 34 1 9.3540 -4.6436 1.1400 35 1 9.9678 -7.2788 -3.0418 36 1 9.1910 -7.6730 -1.4894 37 1 8.2353 -6.9479 -2.8042 38 1 6.7471 -4.2052 -1.6311 39 1 8.2804 -3.3879 -2.1621 40 1 6.2875 3.0229 -0.0080 41 1 4.7512 5.0696 -0.7443 42 1 3.7906 5.3588 1.9802 43 1 1.5577 6.3495 0.4847 44 1 3.3271 7.7061 -0.4894 45 1 1.3129 4.5125 -0.0176 46 1 0.2175 2.3120 -0.0059 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_6672420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:30:43 Heat of formation + Delta-G solvation = -81.043353 kcal Electronic energy + Delta-G solvation = -30062.242408 eV Core-core repulsion = 25694.036817 eV Total energy + Delta-G solvation = -4368.205591 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.78355 -41.19150 -40.63646 -40.15041 -39.13793 -37.52371 -37.12599 -35.52288 -33.68116 -32.00376 -31.23463 -29.48483 -28.40681 -27.44956 -26.70538 -26.30210 -24.97631 -24.02790 -23.17619 -22.06526 -21.81017 -20.74737 -19.74196 -19.04872 -18.62978 -18.01927 -17.82576 -17.65947 -17.17627 -16.96719 -16.76672 -16.57468 -16.29283 -16.18544 -15.96398 -15.87470 -15.69591 -15.16485 -14.68153 -14.59279 -14.54799 -14.27570 -14.21108 -13.63124 -13.49874 -13.44322 -13.43265 -13.27229 -12.91908 -12.50061 -12.47685 -12.27172 -12.13399 -12.09217 -11.79842 -11.66713 -11.54832 -11.43407 -11.04859 -10.61519 -10.44962 -10.38180 -9.85091 -9.02794 -4.89120 -0.69896 0.07859 0.58823 1.14404 1.29989 1.59233 1.85231 1.86703 1.97913 2.12429 2.37461 2.86124 3.13767 3.36853 3.46865 3.53533 3.57595 3.64329 3.77366 3.79173 3.81512 3.85380 3.97006 4.07764 4.15800 4.26351 4.32442 4.41915 4.42914 4.45262 4.48432 4.53666 4.60323 4.68236 4.76442 4.79439 4.80586 4.82018 4.85074 4.85329 4.96771 5.02965 5.04643 5.14749 5.20251 5.31601 5.35951 5.55698 6.15523 6.26846 6.29984 6.49721 6.77458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.138 3.862 4 C 0.021 3.979 5 O -0.180 6.180 6 C -0.032 4.032 7 C 0.600 3.400 8 O -0.548 6.548 9 N -0.700 5.700 10 C 0.130 3.870 11 C -0.111 4.111 12 H 0.120 0.880 13 C -0.127 4.127 14 C 0.055 3.945 15 H 0.105 0.895 16 O -0.404 6.404 17 C 0.024 3.976 18 C -0.151 4.151 19 C -0.113 4.113 20 C -0.096 4.096 21 C -0.100 4.100 22 C -0.091 4.091 23 O -0.548 6.548 24 Si 0.783 3.217 25 C -0.088 4.088 26 C -0.165 4.165 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.418 0.582 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.171 0.829 41 H 0.114 0.886 42 H 0.386 0.614 43 H -0.261 1.261 44 H -0.305 1.305 45 H 0.166 0.834 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -3.473 -0.998 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.092 3.908 4 C -0.027 4.027 5 O -0.082 6.082 6 C -0.083 4.083 7 C 0.385 3.615 8 O -0.427 6.427 9 N -0.351 5.351 10 C 0.008 3.992 11 C -0.129 4.129 12 H 0.138 0.862 13 C -0.165 4.165 14 C -0.003 4.003 15 H 0.123 0.877 16 O -0.323 6.323 17 C -0.072 4.072 18 C -0.189 4.189 19 C -0.134 4.134 20 C -0.097 4.097 21 C -0.101 4.101 22 C -0.198 4.198 23 O -0.356 6.356 24 Si 0.686 3.314 25 C -0.106 4.106 26 C -0.184 4.184 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.255 0.745 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.188 0.812 41 H 0.132 0.868 42 H 0.236 0.764 43 H -0.187 1.187 44 H -0.234 1.234 45 H 0.183 0.817 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.295 -2.761 -1.143 8.817 hybrid contribution -0.100 -0.499 1.197 1.300 sum -8.395 -3.260 0.054 9.005 Atomic orbital electron populations 1.23489 0.75300 1.06032 1.03170 1.86144 1.24319 1.25787 1.88426 1.17975 0.86045 0.86872 0.99902 1.19219 0.88260 0.87094 1.08133 1.84006 1.12658 1.35033 1.76505 1.21908 0.83987 0.92717 1.09659 1.16692 0.85038 0.82796 0.76964 1.90898 1.31494 1.68332 1.52004 1.45849 1.11557 1.04871 1.72801 1.21502 0.84281 0.90805 1.02630 1.22516 1.00032 0.91700 0.98696 0.86210 1.23211 0.97347 0.96278 0.99674 1.23862 0.91374 0.94926 0.90118 0.87737 1.87924 1.50645 1.33786 1.59984 1.22935 1.01584 0.83361 0.99324 1.23602 1.01221 0.97385 0.96692 1.22855 0.95451 0.94416 1.00671 1.19569 0.92261 0.92852 1.05017 1.19552 0.93493 0.93844 1.03191 1.25400 1.07760 0.98653 0.87978 1.86609 1.38968 1.92673 1.17375 0.93875 0.75417 0.73429 0.88687 1.20889 0.92882 0.98865 0.97943 1.21375 1.01822 0.89561 1.05593 0.90835 0.90455 0.86620 0.74511 0.91483 0.90840 0.89672 0.89259 0.89255 0.92957 0.93294 0.89978 0.90248 0.81158 0.86793 0.76435 1.18698 1.23360 0.81706 0.80243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.68 10.50 -93.14 -0.98 -1.65 16 3 C 0.14 0.38 6.70 22.57 0.15 0.53 16 4 C 0.02 0.15 7.35 23.14 0.17 0.32 16 5 O -0.18 -1.51 10.28 -13.34 -0.14 -1.65 16 6 C -0.03 -0.29 7.07 24.00 0.17 -0.12 16 7 C 0.60 5.56 7.80 86.54 0.67 6.23 16 8 O -0.55 -8.64 16.83 -4.20 -0.07 -8.71 16 9 N -0.70 -1.89 5.55 -466.78 -2.59 -4.49 16 10 C 0.13 0.15 5.51 86.38 0.48 0.62 16 11 C -0.11 0.37 3.75 -10.27 -0.04 0.34 16 12 H 0.12 -0.80 8.14 -2.38 -0.02 -0.82 16 13 C -0.13 0.23 7.47 31.12 0.23 0.46 16 14 C 0.05 -0.04 4.31 31.12 0.13 0.09 16 15 H 0.10 -0.45 7.87 -2.39 -0.02 -0.47 16 16 O -0.40 -1.73 10.72 -148.98 -1.60 -3.33 16 17 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 18 C -0.15 0.25 7.47 31.12 0.23 0.48 16 19 C -0.11 -0.99 10.68 23.79 0.25 -0.74 16 20 C -0.10 -0.62 6.16 -20.25 -0.12 -0.75 16 21 C -0.10 -0.14 5.26 -19.87 -0.10 -0.24 16 22 C -0.09 -0.04 2.70 71.24 0.19 0.15 16 23 O -0.55 -2.14 12.88 -148.98 -1.92 -4.06 16 24 Si 0.78 -2.93 30.25 68.60 2.08 -0.85 16 25 C -0.09 0.29 8.62 22.02 0.19 0.48 16 26 C -0.16 0.56 9.03 22.40 0.20 0.76 16 27 H 0.07 -0.74 7.67 -2.39 -0.02 -0.76 16 28 H 0.08 -0.82 7.65 -2.39 -0.02 -0.84 16 29 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 30 H 0.42 -0.50 8.19 -92.71 -0.76 -1.26 16 31 H 0.07 0.25 7.84 -2.39 -0.02 0.23 16 32 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.08 0.06 8.10 -2.38 -0.02 0.04 16 34 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.08 0.13 7.90 -2.39 -0.02 0.11 16 40 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.11 0.08 7.96 -2.38 -0.02 0.06 16 42 H 0.39 -1.02 8.70 -74.06 -0.64 -1.66 16 43 H -0.26 0.81 6.69 99.48 0.67 1.48 16 44 H -0.31 -1.47 7.11 99.48 0.71 -0.76 16 45 H 0.17 -1.41 4.81 -2.91 -0.01 -1.43 16 46 H 0.18 -1.87 6.26 -2.91 -0.02 -1.89 16 Total: 0.00 -22.29 387.49 -0.44 -22.73 By element: Atomic # 1 Polarization: -8.44 SS G_CDS: -0.37 Total: -8.82 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 5.15 Total: 10.84 kcal Atomic # 7 Polarization: -1.89 SS G_CDS: -2.59 Total: -4.49 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -4.70 Total: -19.41 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.08 Total: -0.85 kcal Total: -22.29 -0.44 -22.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_6672420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.318 kcal (2) G-P(sol) polarization free energy of solvation -22.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds