Wall clock time and date at job start Sat Mar 6 2021 18:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99381 * 2 1 4 4 H 1.09001 * 112.85124 * 341.19201 * 3 2 1 5 5 C 1.53954 * 113.66619 * 112.44334 * 3 2 1 6 6 C 1.53787 * 87.02172 * 139.93109 * 5 3 2 7 7 H 1.08996 * 113.61654 * 89.22647 * 6 5 3 8 8 C 1.52994 * 113.61402 * 220.04909 * 6 5 3 9 9 N 1.46500 * 109.47049 * 274.13659 * 8 6 5 10 10 C 1.34774 * 120.00137 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00327 * 359.97438 * 10 9 8 12 12 C 1.50706 * 120.00014 * 179.97438 * 10 9 8 13 13 N 1.46504 * 109.46914 * 179.97438 * 12 10 9 14 14 C 1.36837 * 125.06020 * 264.97248 * 13 12 10 15 15 C 1.34239 * 109.93348 * 180.02562 * 14 13 12 16 16 C 1.50694 * 126.49493 * 179.97438 * 15 14 13 17 17 O 1.42901 * 109.47118 * 255.02113 * 16 15 14 18 18 Si 1.86298 * 109.47775 * 15.02358 * 16 15 14 19 19 C 1.46486 * 107.00017 * 0.24256 * 15 14 13 20 20 C 1.39600 * 134.03574 * 179.76215 * 19 15 14 21 21 C 1.36656 * 119.76522 * 179.97438 * 20 19 15 22 22 C 1.38789 * 120.52838 * 0.02562 * 21 20 19 23 23 C 1.37792 * 120.66716 * 359.63736 * 22 21 20 24 24 C 1.37687 * 125.06404 * 85.01943 * 13 12 10 25 25 C 1.53782 * 87.16997 * 334.63590 * 6 5 3 26 26 H 1.09000 * 109.47217 * 60.00355 * 1 2 3 27 27 H 1.09011 * 109.46547 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47355 * 299.99718 * 1 2 3 29 29 H 1.08996 * 113.61382 * 25.41045 * 5 3 2 30 30 H 1.09004 * 113.66515 * 254.45578 * 5 3 2 31 31 H 1.09001 * 109.47343 * 154.13494 * 8 6 5 32 32 H 1.08999 * 109.47442 * 34.13032 * 8 6 5 33 33 H 0.97004 * 120.00207 * 359.97438 * 9 8 6 34 34 H 1.08994 * 109.46850 * 60.00131 * 12 10 9 35 35 H 1.09002 * 109.47294 * 299.99693 * 12 10 9 36 36 H 1.07997 * 125.03329 * 0.02562 * 14 13 12 37 37 H 1.09004 * 109.47407 * 135.02470 * 16 15 14 38 38 H 0.96708 * 114.00246 * 180.02562 * 17 16 15 39 39 H 1.48506 * 109.99834 * 300.00486 * 18 16 15 40 40 H 1.48502 * 110.00011 * 61.31751 * 18 16 15 41 41 H 1.08003 * 120.11534 * 0.02562 * 20 19 15 42 42 H 1.07998 * 119.73948 * 180.02562 * 21 20 19 43 43 H 1.08002 * 119.67039 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.11377 * 179.88969 * 23 22 21 45 45 H 1.09002 * 113.61228 * 139.94067 * 25 6 5 46 46 H 1.09003 * 113.61779 * 270.75942 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 -0.3238 5 6 2.7532 1.6512 1.3033 6 6 3.8226 2.3184 0.4222 7 1 3.6233 3.3696 0.2142 8 6 5.2541 2.0683 0.9006 9 7 5.6130 3.0671 1.9104 10 6 6.8355 3.0432 2.4772 11 8 7.6385 2.1946 2.1517 12 6 7.2049 4.0711 3.5156 13 7 8.5757 3.8315 3.9738 14 6 8.9184 3.1075 5.0832 15 6 10.2537 3.0823 5.2187 16 6 11.0310 2.3923 6.3099 17 8 11.5218 3.3658 7.2337 18 14 9.9182 1.1943 7.2029 19 6 10.8116 3.8582 4.1085 20 6 12.1080 4.1934 3.7139 21 6 12.3013 4.9544 2.5954 22 6 11.2188 5.3975 1.8485 23 6 9.9311 5.0726 2.2160 24 6 9.7109 4.3022 3.3529 25 6 3.3755 1.3721 -0.7045 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.1161 0.7772 1.8439 30 1 2.2144 2.3515 1.9416 31 1 5.9382 2.1441 0.0553 32 1 5.3230 1.0712 1.3354 33 1 4.9710 3.7462 2.1706 34 1 6.5212 3.9953 4.3610 35 1 7.1359 5.0682 3.0806 36 1 8.2184 2.6273 5.7508 37 1 11.8700 1.8515 5.8721 38 1 12.0333 2.9920 7.9644 39 1 8.7702 1.9193 7.8044 40 1 9.4266 0.1581 6.2597 41 1 12.9552 3.8518 4.2901 42 1 13.3045 5.2132 2.2903 43 1 11.3875 5.9979 0.9667 44 1 9.0952 5.4237 1.6291 45 1 3.3383 1.8472 -1.6848 46 1 3.9098 0.4220 -0.7147 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12345242_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:31:00 Heat of formation + Delta-G solvation = -11.361810 kcal Electronic energy + Delta-G solvation = -27743.489281 eV Core-core repulsion = 23794.706163 eV Total energy + Delta-G solvation = -3948.783119 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.47127 -41.05478 -40.20610 -37.96374 -37.62929 -37.39843 -35.37550 -34.13358 -31.51591 -30.19294 -29.89934 -28.44069 -27.44187 -26.84396 -25.53819 -23.76258 -23.36827 -22.52749 -21.76482 -20.72873 -20.42039 -18.72807 -18.24582 -18.15550 -17.73013 -17.62290 -16.86607 -16.75154 -16.57550 -16.33294 -16.09113 -15.77665 -15.40288 -15.28586 -14.92838 -14.75083 -14.64927 -14.37188 -14.29670 -13.99754 -13.74402 -13.58925 -13.46401 -13.39646 -12.99262 -12.64221 -12.62139 -12.44915 -12.32312 -12.11730 -11.89449 -11.87866 -11.63653 -11.60445 -11.08773 -10.54846 -10.41842 -10.25129 -10.09336 -9.01790 -8.52767 -4.94440 0.28106 0.80509 1.38773 1.39809 1.44028 1.61705 1.77520 2.06167 2.11749 2.72670 3.11272 3.27687 3.36552 3.46692 3.53152 3.61706 3.64543 3.70090 3.76531 3.81533 3.85272 3.92660 4.09112 4.11393 4.30735 4.32933 4.36675 4.37610 4.48024 4.52570 4.54987 4.65544 4.68694 4.70747 4.71502 4.79176 4.82260 4.91230 4.96510 4.99786 5.09558 5.25540 5.26540 5.65179 5.80782 5.86367 5.89972 6.13894 6.16641 6.30419 6.37510 6.81702 7.00099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.061 3.939 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.124 4.124 7 H 0.100 0.900 8 C 0.133 3.867 9 N -0.727 5.727 10 C 0.489 3.511 11 O -0.514 6.514 12 C 0.092 3.908 13 N -0.465 5.465 14 C 0.064 3.936 15 C -0.150 4.150 16 C -0.032 4.032 17 O -0.547 6.547 18 Si 0.681 3.319 19 C -0.085 4.085 20 C -0.063 4.063 21 C -0.145 4.145 22 C -0.096 4.096 23 C -0.127 4.127 24 C 0.109 3.891 25 C -0.127 4.127 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.162 0.838 37 H 0.070 0.930 38 H 0.378 0.622 39 H -0.254 1.254 40 H -0.256 1.256 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.302 1.806 1.179 4.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.003 3.997 4 H 0.107 0.893 5 C -0.189 4.189 6 C -0.143 4.143 7 H 0.118 0.882 8 C 0.009 3.991 9 N -0.381 5.381 10 C 0.273 3.727 11 O -0.388 6.388 12 C -0.035 4.035 13 N -0.149 5.149 14 C -0.060 4.060 15 C -0.158 4.158 16 C -0.144 4.144 17 O -0.353 6.353 18 Si 0.582 3.418 19 C -0.090 4.090 20 C -0.082 4.082 21 C -0.164 4.164 22 C -0.115 4.115 23 C -0.148 4.148 24 C 0.005 3.995 25 C -0.165 4.165 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.236 0.764 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.179 0.821 37 H 0.088 0.912 38 H 0.225 0.775 39 H -0.179 1.179 40 H -0.180 1.180 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.133 0.867 45 H 0.097 0.903 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.047 1.093 0.491 5.187 hybrid contribution -0.711 0.834 -0.441 1.182 sum -5.758 1.927 0.050 6.073 Atomic orbital electron populations 1.22823 0.80867 1.03085 1.00001 1.87967 1.19910 1.27100 1.94532 1.23717 0.93905 0.85603 0.96516 0.89307 1.23658 0.97074 1.01016 0.97166 1.22570 0.93547 1.00149 0.98038 0.88158 1.21358 0.94649 0.92024 0.91022 1.45939 1.15173 1.34117 1.42823 1.21009 0.82233 0.86466 0.83023 1.90819 1.49196 1.37187 1.61576 1.21599 0.83204 0.99752 0.98909 1.43173 1.03833 1.45248 1.22613 1.21413 0.95687 0.98143 0.90802 1.19535 0.91722 1.06238 0.98265 1.23939 1.02559 0.96193 0.91666 1.86540 1.74260 1.35041 1.39418 0.95373 0.81667 0.79400 0.85331 1.18927 0.92812 1.01338 0.95879 1.20283 0.94849 0.96962 0.96067 1.20668 0.98993 1.00549 0.96231 1.20830 0.91485 0.99589 0.99611 1.19956 0.97695 1.01468 0.95654 1.18170 0.85115 1.00079 0.96144 1.23208 0.95360 1.00209 0.97692 0.93861 0.89468 0.93967 0.88875 0.91023 0.90943 0.90947 0.76372 0.86096 0.86236 0.82092 0.91162 0.77519 1.17904 1.18007 0.85866 0.85793 0.85624 0.86677 0.90339 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.57 10.72 -35.23 -0.38 -0.94 16 3 C 0.06 -0.06 4.31 -25.82 -0.11 -0.17 16 4 H 0.09 -0.20 7.87 -51.93 -0.41 -0.61 16 5 C -0.15 0.28 7.48 -25.82 -0.19 0.09 16 6 C -0.12 0.33 3.75 -89.81 -0.34 -0.01 16 7 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 8 C 0.13 -0.10 5.50 -4.04 -0.02 -0.12 16 9 N -0.73 1.21 5.56 -60.29 -0.33 0.87 16 10 C 0.49 0.73 7.90 -10.98 -0.09 0.65 16 11 O -0.51 -3.49 16.42 5.56 0.09 -3.40 16 12 C 0.09 -0.06 6.48 -5.19 -0.03 -0.10 16 13 N -0.47 -1.65 2.27 -115.70 -0.26 -1.91 16 14 C 0.06 0.27 9.89 -16.73 -0.17 0.10 16 15 C -0.15 -0.75 5.61 -102.71 -0.58 -1.33 16 16 C -0.03 -0.07 3.05 36.00 0.11 0.04 16 17 O -0.55 -1.04 12.86 -35.23 -0.45 -1.49 16 18 Si 0.68 0.18 30.79 -169.99 -5.23 -5.06 16 19 C -0.09 -0.50 6.35 -105.14 -0.67 -1.17 16 20 C -0.06 -0.28 10.05 -39.65 -0.40 -0.68 16 21 C -0.15 -0.47 9.97 -39.95 -0.40 -0.87 16 22 C -0.10 -0.28 10.01 -39.54 -0.40 -0.68 16 23 C -0.13 -0.47 10.00 -39.43 -0.39 -0.86 16 24 C 0.11 0.56 6.80 -83.99 -0.57 -0.01 16 25 C -0.13 0.18 7.48 -25.91 -0.19 -0.01 16 26 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 27 H 0.09 -0.14 8.14 -51.92 -0.42 -0.56 16 28 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16 29 H 0.09 -0.04 7.92 -51.93 -0.41 -0.45 16 30 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 31 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 32 H 0.07 0.07 7.87 -51.93 -0.41 -0.34 16 33 H 0.40 -1.96 8.47 -40.82 -0.35 -2.31 16 34 H 0.12 -0.44 8.12 -51.93 -0.42 -0.87 16 35 H 0.12 -0.38 8.14 -51.93 -0.42 -0.81 16 36 H 0.16 0.36 6.30 -52.49 -0.33 0.03 16 37 H 0.07 0.07 7.96 -51.93 -0.41 -0.34 16 38 H 0.38 -1.29 8.74 45.56 0.40 -0.89 16 39 H -0.25 -0.62 7.04 56.52 0.40 -0.22 16 40 H -0.26 -0.88 7.11 56.52 0.40 -0.48 16 41 H 0.12 0.36 8.06 -52.48 -0.42 -0.06 16 42 H 0.12 0.12 8.06 -52.49 -0.42 -0.30 16 43 H 0.13 0.06 8.06 -52.49 -0.42 -0.36 16 44 H 0.12 0.18 8.06 -52.48 -0.42 -0.25 16 45 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 46 H 0.10 -0.03 8.10 -51.93 -0.42 -0.45 16 LS Contribution 386.96 15.07 5.83 5.83 Total: 0.00 -11.74 386.96 -11.12 -22.86 By element: Atomic # 1 Polarization: -5.66 SS G_CDS: -7.04 Total: -12.69 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.34 Total: -4.06 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: -0.60 Total: -1.04 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.74 Total: -5.84 kcal Atomic # 14 Polarization: 0.18 SS G_CDS: -5.23 Total: -5.06 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -11.74 -11.12 -22.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.499 kcal (2) G-P(sol) polarization free energy of solvation -11.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds