Wall clock time and date at job start Sat Mar 6 2021 19:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86302 * 109.46720 * 2 1 4 4 C 1.50697 * 109.46968 * 119.99948 * 2 1 3 5 5 C 1.38237 * 119.99961 * 65.00357 * 4 2 1 6 6 C 1.38234 * 119.99765 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00175 * 359.97248 * 6 5 4 8 8 C 1.50703 * 120.00025 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46918 * 90.00084 * 8 7 6 10 10 O 1.21274 * 119.99964 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99508 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99594 * 180.02562 * 11 9 8 13 13 H 1.09006 * 112.85122 * 336.19708 * 12 11 9 14 14 C 1.53779 * 113.69115 * 107.46541 * 12 11 9 15 15 C 1.53784 * 87.08045 * 139.99342 * 14 12 11 16 16 H 1.08994 * 113.61477 * 89.11454 * 15 14 12 17 17 C 1.52997 * 113.61270 * 220.02125 * 15 14 12 18 18 O 1.42902 * 109.47204 * 272.49576 * 17 15 14 19 19 C 1.53779 * 113.61245 * 205.00346 * 12 11 9 20 20 C 1.38231 * 120.00039 * 0.28269 * 7 6 5 21 21 C 1.38234 * 120.00059 * 244.97751 * 4 2 1 22 22 H 0.96702 * 113.99862 * 59.99987 * 1 2 3 23 23 H 1.09000 * 109.47445 * 240.00068 * 2 1 3 24 24 H 1.48504 * 109.99821 * 60.00376 * 3 2 1 25 25 H 1.48507 * 109.99503 * 181.31522 * 3 2 1 26 26 H 1.07994 * 120.00064 * 359.97303 * 5 4 2 27 27 H 1.08003 * 119.99917 * 179.97438 * 6 5 4 28 28 H 1.09009 * 109.47158 * 330.00568 * 8 7 6 29 29 H 1.09000 * 109.47307 * 210.00695 * 8 7 6 30 30 H 0.96996 * 120.00779 * 0.02562 * 11 9 8 31 31 H 1.09002 * 113.61557 * 25.44454 * 14 12 11 32 32 H 1.09004 * 113.61501 * 254.53874 * 14 12 11 33 33 H 1.08998 * 109.47573 * 32.49481 * 17 15 14 34 34 H 1.09003 * 109.47157 * 152.50001 * 17 15 14 35 35 H 0.96701 * 113.99899 * 180.02562 * 18 17 15 36 36 H 1.08997 * 113.61646 * 105.38794 * 19 12 11 37 37 H 1.09000 * 113.61527 * 334.48065 * 19 12 11 38 38 H 1.08004 * 120.00188 * 179.72356 * 20 7 6 39 39 H 1.07998 * 119.99899 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6848 -2.0602 1.3983 6 6 2.1460 -2.7119 2.5268 7 6 2.8543 -2.0140 3.4871 8 6 3.3576 -2.7247 4.7170 9 6 4.7388 -3.2669 4.4539 10 8 5.2631 -3.0930 3.3742 11 7 5.3919 -3.9443 5.4189 12 6 6.7349 -4.4710 5.1633 13 1 6.9336 -4.6274 4.1030 14 6 7.8493 -3.7015 5.8919 15 6 8.5066 -5.0654 6.1616 16 1 9.1895 -5.3843 5.3743 17 6 9.1124 -5.1877 7.5612 18 8 10.4551 -4.6987 7.5434 19 6 7.1009 -5.6779 6.0432 20 6 3.0963 -0.6631 3.3217 21 6 2.6391 -0.0124 2.1910 22 1 -0.3933 0.4417 -0.7651 23 1 1.7925 -0.5138 -0.8900 24 1 1.5614 2.4679 1.2086 25 1 3.5346 1.7703 -0.0320 26 1 1.1318 -2.6055 0.6479 27 1 1.9530 -3.7664 2.6582 28 1 2.6851 -3.5468 4.9624 29 1 3.3949 -2.0245 5.5515 30 1 4.9728 -4.0831 6.2826 31 1 7.5108 -3.1937 6.7951 32 1 8.4349 -3.0566 5.2367 33 1 8.5217 -4.6018 8.2653 34 1 9.1108 -6.2337 7.8677 35 1 10.9023 -4.7462 8.3995 36 1 7.0824 -6.6284 5.5102 37 1 6.5578 -5.7104 6.9877 38 1 3.6458 -0.1169 4.0741 39 1 2.8318 1.0422 2.0599 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_12335836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:29:35 Heat of formation + Delta-G solvation = -72.506780 kcal Electronic energy + Delta-G solvation = -20850.632065 eV Core-core repulsion = 17532.150931 eV Total energy + Delta-G solvation = -3318.481134 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45687 -40.60357 -39.51870 -37.63991 -37.25007 -34.64931 -34.10285 -32.10925 -30.14790 -28.57771 -26.75026 -25.83236 -24.00458 -23.47993 -22.02993 -21.50031 -20.60299 -18.40932 -18.33534 -18.06013 -17.87126 -17.19288 -17.00806 -16.52081 -16.31256 -16.02777 -15.37974 -15.31425 -15.09334 -14.81530 -14.46813 -14.43853 -13.91823 -13.67530 -13.52374 -13.47294 -13.06282 -12.96631 -12.72191 -12.39907 -12.28140 -12.06984 -11.91952 -11.75061 -11.50384 -11.02976 -10.82305 -10.35226 -10.08273 -10.04021 -9.72442 -5.00289 0.09322 0.28464 1.25935 1.55463 1.59411 1.92905 2.10911 2.64313 3.21577 3.38879 3.43173 3.54306 3.63885 3.68318 3.76956 3.79953 3.93960 3.96236 4.02984 4.21667 4.30593 4.40026 4.43072 4.44502 4.51163 4.58049 4.61072 4.67366 4.75321 4.77660 4.89068 4.93249 4.98201 5.03821 5.21174 5.26229 5.38619 5.43571 5.54423 5.86677 6.51762 6.87496 6.87849 7.22208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.079 4.079 3 Si 0.778 3.222 4 C -0.097 4.097 5 C -0.103 4.103 6 C -0.111 4.111 7 C -0.071 4.071 8 C -0.097 4.097 9 C 0.512 3.488 10 O -0.584 6.584 11 N -0.706 5.706 12 C 0.116 3.884 13 H 0.088 0.912 14 C -0.144 4.144 15 C -0.113 4.113 16 H 0.084 0.916 17 C 0.085 3.915 18 O -0.601 6.601 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.147 4.147 22 H 0.403 0.597 23 H 0.090 0.910 24 H -0.293 1.293 25 H -0.297 1.297 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.420 0.580 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 -2.213 4.134 5.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.189 4.189 3 Si 0.685 3.315 4 C -0.097 4.097 5 C -0.121 4.121 6 C -0.129 4.129 7 C -0.071 4.071 8 C -0.136 4.136 9 C 0.300 3.700 10 O -0.463 6.463 11 N -0.358 5.358 12 C 0.011 3.989 13 H 0.106 0.894 14 C -0.183 4.183 15 C -0.132 4.132 16 H 0.102 0.898 17 C 0.008 3.992 18 O -0.410 6.410 19 C -0.156 4.156 20 C -0.131 4.131 21 C -0.164 4.164 22 H 0.254 0.746 23 H 0.108 0.892 24 H -0.221 1.221 25 H -0.225 1.225 26 H 0.155 0.845 27 H 0.162 0.838 28 H 0.154 0.846 29 H 0.149 0.851 30 H 0.258 0.742 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.027 -1.722 3.708 4.563 hybrid contribution 0.401 -0.447 0.930 1.107 sum -1.626 -2.169 4.638 5.372 Atomic orbital electron populations 1.86437 1.16972 1.82397 1.51348 1.24814 0.85999 1.10950 0.97118 0.94576 0.76916 0.75544 0.84483 1.19721 0.99006 0.95049 0.95926 1.21202 0.98839 0.93715 0.98329 1.21366 0.97348 1.00671 0.93495 1.19603 0.97489 0.93401 0.96629 1.20770 0.92926 1.02879 0.97024 1.21051 0.87986 0.77295 0.83658 1.90740 1.69894 1.59083 1.26601 1.45867 1.17227 1.55780 1.16933 1.22407 0.81387 0.95373 0.99745 0.89378 1.23528 0.96874 0.96896 1.00981 1.22331 0.96061 0.96998 0.97818 0.89751 1.22243 0.82550 0.98591 0.95847 1.86457 1.27963 1.87426 1.39129 1.23282 0.94209 0.97206 1.00915 1.21149 0.99372 0.94969 0.97635 1.21006 1.00932 0.98943 0.95532 0.74560 0.89232 1.22137 1.22534 0.84505 0.83843 0.84553 0.85112 0.74224 0.88446 0.93256 0.92029 0.92095 0.75359 0.89802 0.86743 0.84650 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.30 12.81 -148.98 -1.91 -3.21 16 2 C -0.08 -0.26 2.79 71.23 0.20 -0.06 16 3 Si 0.78 1.23 29.85 68.60 2.05 3.28 16 4 C -0.10 -0.89 5.38 -19.87 -0.11 -1.00 16 5 C -0.10 -0.80 9.69 22.27 0.22 -0.58 16 6 C -0.11 -0.64 9.70 22.27 0.22 -0.43 16 7 C -0.07 -0.37 4.37 -19.87 -0.09 -0.46 16 8 C -0.10 0.25 5.83 29.10 0.17 0.42 16 9 C 0.51 1.78 7.82 87.66 0.69 2.47 16 10 O -0.58 -8.59 15.63 -3.01 -0.05 -8.64 16 11 N -0.71 1.93 5.36 -440.03 -2.36 -0.43 16 12 C 0.12 0.02 4.24 45.51 0.19 0.21 16 13 H 0.09 0.56 7.47 -2.38 -0.02 0.54 16 14 C -0.14 -0.11 7.43 31.12 0.23 0.12 16 15 C -0.11 0.12 4.01 -10.27 -0.04 0.08 16 16 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 17 C 0.09 -0.25 6.88 71.98 0.50 0.24 16 18 O -0.60 -0.88 13.66 -148.98 -2.04 -2.91 16 19 C -0.12 0.62 7.39 31.12 0.23 0.85 16 20 C -0.11 -0.89 9.70 22.27 0.22 -0.68 16 21 C -0.15 -1.51 8.67 22.27 0.19 -1.32 16 22 H 0.40 -3.49 8.74 -74.06 -0.65 -4.13 16 23 H 0.09 -0.02 7.96 -2.39 -0.02 -0.04 16 24 H -0.29 -2.45 7.05 99.48 0.70 -1.75 16 25 H -0.30 -2.48 7.11 99.48 0.71 -1.78 16 26 H 0.14 0.64 8.06 -2.91 -0.02 0.62 16 27 H 0.14 0.13 8.06 -2.91 -0.02 0.10 16 28 H 0.14 -1.17 8.09 -2.38 -0.02 -1.19 16 29 H 0.13 -1.00 8.08 -2.39 -0.02 -1.02 16 30 H 0.42 -4.33 8.73 -92.71 -0.81 -5.14 16 31 H 0.10 -0.19 7.90 -2.39 -0.02 -0.20 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.06 -0.37 7.84 -2.39 -0.02 -0.39 16 34 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.40 -2.89 9.12 -74.06 -0.68 -3.56 16 36 H 0.08 -0.45 8.14 -2.39 -0.02 -0.46 16 37 H 0.11 -1.16 8.08 -2.39 -0.02 -1.18 16 38 H 0.14 0.54 8.06 -2.91 -0.02 0.51 16 39 H 0.11 1.09 4.87 -2.91 -0.01 1.08 16 Total: 0.00 -27.44 329.00 -2.51 -29.95 By element: Atomic # 1 Polarization: -16.88 SS G_CDS: -1.02 Total: -17.90 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 2.81 Total: -0.14 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -2.36 Total: -0.43 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -3.99 Total: -14.76 kcal Atomic # 14 Polarization: 1.23 SS G_CDS: 2.05 Total: 3.28 kcal Total: -27.44 -2.51 -29.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_12335836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.561 kcal (2) G-P(sol) polarization free energy of solvation -27.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds