Wall clock time and date at job start Sat Mar 6 2021 19:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86302 * 109.46679 * 2 1 4 4 C 1.50697 * 109.47338 * 240.00335 * 2 1 3 5 5 C 1.38410 * 119.82408 * 299.99731 * 4 2 1 6 6 C 1.37885 * 120.16947 * 179.97438 * 5 4 2 7 7 C 1.39834 * 119.82693 * 0.02603 * 6 5 4 8 8 C 1.47219 * 120.16882 * 179.97438 * 7 6 5 9 9 C 1.34811 * 119.99690 * 180.02562 * 8 7 6 10 10 C 1.46426 * 119.99827 * 180.02562 * 9 8 7 11 11 O 1.21703 * 119.99874 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00047 * 179.72509 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27524 * 12 10 9 14 14 H 1.08995 * 112.84615 * 334.66197 * 13 12 10 15 15 C 1.53775 * 113.61442 * 105.85931 * 13 12 10 16 16 C 1.53957 * 87.02116 * 139.94966 * 15 13 12 17 17 H 1.09003 * 113.61092 * 89.19151 * 16 15 13 18 18 C 1.52993 * 113.66969 * 220.06745 * 16 15 13 19 19 O 1.42896 * 109.47381 * 272.55511 * 18 16 15 20 20 C 1.53785 * 113.61042 * 203.46907 * 13 12 10 21 21 C 1.39835 * 119.66404 * 0.27063 * 7 6 5 22 22 C 1.37899 * 119.82132 * 359.42665 * 21 7 6 23 23 H 0.96702 * 114.00352 * 59.99943 * 1 2 3 24 24 H 1.08994 * 109.47028 * 119.99447 * 2 1 3 25 25 H 1.48505 * 110.00210 * 298.67822 * 3 2 1 26 26 H 1.48498 * 110.00310 * 60.00194 * 3 2 1 27 27 H 1.08000 * 119.91081 * 0.02562 * 5 4 2 28 28 H 1.08006 * 120.09044 * 180.02562 * 6 5 4 29 29 H 1.07991 * 119.99792 * 359.97438 * 8 7 6 30 30 H 1.08002 * 119.99995 * 359.97438 * 9 8 7 31 31 H 0.97000 * 119.99736 * 0.26799 * 12 10 9 32 32 H 1.09003 * 113.61624 * 254.52725 * 15 13 12 33 33 H 1.09007 * 113.61723 * 25.43343 * 15 13 12 34 34 H 1.08997 * 109.47133 * 32.56119 * 18 16 15 35 35 H 1.09007 * 109.47149 * 152.55507 * 18 16 15 36 36 H 0.96698 * 114.00116 * 179.97438 * 19 18 16 37 37 H 1.09000 * 113.61317 * 334.56023 * 20 13 12 38 38 H 1.08993 * 113.61263 * 105.47321 * 20 13 12 39 39 H 1.07995 * 120.08805 * 179.70594 * 21 7 6 40 40 H 1.07999 * 119.91387 * 180.31958 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.5949 -2.0355 -1.4459 6 6 2.0502 -2.6922 -2.5696 7 6 2.8543 -2.0160 -3.4924 8 6 3.3450 -2.7100 -4.6944 9 6 4.1205 -2.0549 -5.5815 10 6 4.6081 -2.7449 -6.7774 11 8 4.3138 -3.9100 -6.9702 12 7 5.3788 -2.0885 -7.6671 13 6 5.8617 -2.7772 -8.8666 14 1 5.9265 -3.8575 -8.7371 15 6 5.1359 -2.3535 -10.1544 16 6 6.5085 -2.4059 -10.8497 17 1 6.7509 -3.3844 -11.2643 18 6 6.7372 -1.2659 -11.8441 19 8 6.2269 -1.6416 -13.1249 20 6 7.1317 -2.1513 -9.4669 21 6 3.1951 -0.6791 -3.2645 22 6 2.7267 -0.0342 -2.1391 23 1 -0.3934 0.4417 -0.7650 24 1 1.7923 -0.5137 0.8900 25 1 1.5878 2.4586 -1.2243 26 1 1.5614 2.4680 1.2085 27 1 0.9734 -2.5561 -0.7325 28 1 1.7864 -3.7261 -2.7367 29 1 3.0845 -3.7440 -4.8651 30 1 4.3813 -1.0209 -5.4106 31 1 5.6136 -1.1600 -7.5132 32 1 4.4301 -3.0979 -10.5229 33 1 4.7091 -1.3517 -10.1057 34 1 6.2216 -0.3710 -11.4958 35 1 7.8050 -1.0621 -11.9240 36 1 6.3377 -0.9646 -13.8064 37 1 7.2515 -1.0942 -9.2299 38 1 8.0347 -2.7328 -9.2813 39 1 3.8196 -0.1517 -3.9703 40 1 2.9848 0.9998 -1.9643 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_12360594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:30:00 Heat of formation + Delta-G solvation = -52.892464 kcal Electronic energy + Delta-G solvation = -21474.309479 eV Core-core repulsion = 18028.452745 eV Total energy + Delta-G solvation = -3445.856734 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26980 -40.61027 -39.62268 -37.91374 -37.24688 -35.09148 -34.51988 -32.21112 -31.28487 -28.91443 -27.12729 -26.71570 -24.64721 -23.97230 -22.83045 -21.83467 -21.03931 -20.15524 -18.88267 -18.26531 -18.12103 -17.51765 -16.97667 -16.59127 -16.34687 -16.19461 -16.03477 -15.83863 -15.25731 -15.21319 -15.02451 -14.50325 -14.42178 -14.13167 -13.83739 -13.46816 -13.37958 -13.27621 -13.05616 -12.69244 -12.32756 -12.24219 -12.10317 -11.72772 -11.61871 -11.47306 -11.36208 -11.05502 -10.79319 -10.62197 -10.08951 -9.98039 -9.24704 -4.91789 -0.55680 0.39573 0.87687 1.31100 1.60577 1.97209 2.18694 2.21474 2.80709 3.24324 3.38936 3.44954 3.55241 3.66829 3.70703 3.79782 3.81894 3.94708 4.01927 4.17443 4.20936 4.36214 4.43113 4.44828 4.47953 4.57187 4.64184 4.70583 4.77736 4.81046 4.84821 4.97752 5.01258 5.06499 5.09204 5.16791 5.28282 5.38235 5.47488 5.57647 5.59950 5.90061 6.46488 6.55177 6.90290 7.21799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.089 4.089 3 Si 0.772 3.228 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.104 4.104 7 C -0.081 4.081 8 C -0.022 4.022 9 C -0.207 4.207 10 C 0.540 3.460 11 O -0.596 6.596 12 N -0.700 5.700 13 C 0.115 3.885 14 H 0.090 0.910 15 C -0.144 4.144 16 C -0.113 4.113 17 H 0.085 0.915 18 C 0.085 3.915 19 O -0.601 6.601 20 C -0.118 4.118 21 C -0.094 4.094 22 C -0.121 4.121 23 H 0.386 0.614 24 H 0.124 0.876 25 H -0.278 1.278 26 H -0.307 1.307 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.120 0.880 30 H 0.167 0.833 31 H 0.420 0.580 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.396 0.604 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.159 0.841 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 7.158 -0.277 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.197 4.197 3 Si 0.677 3.323 4 C -0.110 4.110 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.081 4.081 8 C -0.042 4.042 9 C -0.227 4.227 10 C 0.330 3.670 11 O -0.479 6.479 12 N -0.350 5.350 13 C 0.010 3.990 14 H 0.108 0.892 15 C -0.183 4.183 16 C -0.132 4.132 17 H 0.104 0.896 18 C 0.008 3.992 19 O -0.410 6.410 20 C -0.156 4.156 21 C -0.112 4.112 22 C -0.138 4.138 23 H 0.235 0.765 24 H 0.142 0.858 25 H -0.205 1.205 26 H -0.236 1.236 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.138 0.862 30 H 0.184 0.816 31 H 0.258 0.742 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.246 0.754 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.177 0.823 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.897 6.329 0.435 8.015 hybrid contribution -1.208 0.183 -0.763 1.440 sum 3.689 6.512 -0.328 7.492 Atomic orbital electron populations 1.86579 1.18584 1.80415 1.50204 1.25338 0.83442 1.12200 0.98730 0.94064 0.90188 0.71614 0.76398 1.20552 0.98531 0.94948 0.96975 1.21068 0.99512 0.94342 0.97624 1.21608 0.96417 1.00560 0.93636 1.19115 0.99518 0.94684 0.94755 1.22368 0.91771 0.99141 0.90954 1.23026 1.02847 1.02378 0.94453 1.18862 0.78046 0.85974 0.84089 1.90817 1.59622 1.19147 1.78309 1.45753 1.51189 1.16156 1.21932 1.22452 0.95797 0.97744 0.83027 0.89187 1.23559 0.96924 1.02389 0.95413 1.22363 0.96749 0.99875 0.94180 0.89630 1.22241 0.98278 0.95995 0.82727 1.86455 1.84794 1.48138 1.21581 1.23280 0.96484 1.03228 0.92580 1.21663 0.98763 0.93151 0.97583 1.21188 0.97886 1.00595 0.94157 0.76451 0.85818 1.20474 1.23606 0.85369 0.84758 0.86248 0.81558 0.74205 0.93076 0.88531 0.92055 0.92065 0.75377 0.86727 0.89653 0.82345 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.03 12.76 -148.98 -1.90 -2.93 16 2 C -0.09 0.16 2.82 71.23 0.20 0.36 16 3 Si 0.77 -2.94 29.77 68.60 2.04 -0.90 16 4 C -0.11 0.16 5.40 -19.79 -0.11 0.05 16 5 C -0.11 -0.05 9.59 22.23 0.21 0.16 16 6 C -0.10 -0.06 9.80 22.57 0.22 0.17 16 7 C -0.08 0.03 5.87 -20.14 -0.12 -0.08 16 8 C -0.02 -0.03 9.46 23.84 0.23 0.20 16 9 C -0.21 0.31 9.41 23.62 0.22 0.53 16 10 C 0.54 2.44 7.74 86.37 0.67 3.11 16 11 O -0.60 -8.80 15.85 -4.36 -0.07 -8.87 16 12 N -0.70 1.38 5.36 -444.25 -2.38 -1.00 16 13 C 0.12 0.02 4.21 45.52 0.19 0.21 16 14 H 0.09 0.53 7.50 -2.39 -0.02 0.51 16 15 C -0.14 -0.09 7.45 31.18 0.23 0.14 16 16 C -0.11 0.16 4.01 -10.21 -0.04 0.12 16 17 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 18 C 0.08 -0.28 6.89 71.98 0.50 0.21 16 19 O -0.60 -0.67 13.66 -148.98 -2.03 -2.71 16 20 C -0.12 0.65 7.39 31.12 0.23 0.88 16 21 C -0.09 0.40 9.41 22.58 0.21 0.61 16 22 C -0.12 0.50 8.65 22.23 0.19 0.70 16 23 H 0.39 -1.44 8.70 -74.06 -0.64 -2.09 16 24 H 0.12 -0.37 7.96 -2.39 -0.02 -0.38 16 25 H -0.28 0.19 7.11 99.48 0.71 0.90 16 26 H -0.31 -1.46 7.11 99.48 0.71 -0.75 16 27 H 0.13 0.02 8.06 -2.91 -0.02 -0.01 16 28 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 29 H 0.12 0.53 7.52 -2.91 -0.02 0.51 16 30 H 0.17 -1.60 6.07 -2.91 -0.02 -1.62 16 31 H 0.42 -4.03 8.69 -92.71 -0.81 -4.84 16 32 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.10 -0.18 7.90 -2.38 -0.02 -0.19 16 34 H 0.06 -0.39 7.85 -2.39 -0.02 -0.41 16 35 H 0.06 -0.37 8.14 -2.38 -0.02 -0.39 16 36 H 0.40 -3.01 9.12 -74.06 -0.68 -3.68 16 37 H 0.11 -1.19 8.07 -2.39 -0.02 -1.21 16 38 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.16 -1.64 6.17 -2.91 -0.02 -1.66 16 40 H 0.15 -1.31 4.85 -2.91 -0.01 -1.32 16 Total: 0.00 -23.65 338.79 -2.30 -25.95 By element: Atomic # 1 Polarization: -15.92 SS G_CDS: -1.00 Total: -16.92 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 3.04 Total: 7.37 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.38 Total: -1.00 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -4.01 Total: -14.50 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.04 Total: -0.90 kcal Total: -23.65 -2.30 -25.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_12360594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.940 kcal (2) G-P(sol) polarization free energy of solvation -23.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds