Wall clock time and date at job start Sat Mar 6 2021 19:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35648 * 116.99691 * 2 1 4 4 C 1.40144 * 120.14871 * 179.97438 * 3 2 1 5 5 C 1.47534 * 120.18955 * 359.95218 * 4 3 2 6 6 O 1.21585 * 120.00072 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99751 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99895 * 180.02562 * 7 5 4 9 9 H 1.09008 * 112.90540 * 336.24622 * 8 7 5 10 10 C 1.53775 * 113.61656 * 107.50207 * 8 7 5 11 11 C 1.53779 * 87.08438 * 139.98199 * 10 8 7 12 12 H 1.09002 * 113.61731 * 89.11293 * 11 10 8 13 13 C 1.53000 * 113.69071 * 220.00724 * 11 10 8 14 14 O 1.42898 * 109.47043 * 274.06394 * 13 11 10 15 15 C 1.53777 * 113.61534 * 204.99945 * 8 7 5 16 16 C 1.39711 * 119.61838 * 180.23057 * 4 3 2 17 17 C 1.37790 * 119.90572 * 359.53703 * 16 4 3 18 18 C 1.50694 * 119.84966 * 180.18796 * 17 16 4 19 19 O 1.42897 * 109.47136 * 300.25419 * 18 17 16 20 20 Si 1.86299 * 109.47441 * 180.25205 * 18 17 16 21 21 C 1.38550 * 120.29885 * 0.43964 * 17 16 4 22 22 C 1.38054 * 120.39048 * 359.79377 * 21 17 16 23 23 H 1.09002 * 109.47063 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47515 * 300.00192 * 1 2 3 25 25 H 1.09007 * 109.47132 * 60.00774 * 1 2 3 26 26 H 0.97002 * 120.00021 * 359.97438 * 7 5 4 27 27 H 1.08993 * 113.61636 * 25.42563 * 10 8 7 28 28 H 1.09008 * 113.61006 * 254.52805 * 10 8 7 29 29 H 1.09001 * 109.47043 * 34.05895 * 13 11 10 30 30 H 1.08992 * 109.47277 * 154.06065 * 13 11 10 31 31 H 0.96703 * 113.99884 * 180.02562 * 14 13 11 32 32 H 1.08997 * 113.61941 * 105.46412 * 15 8 7 33 33 H 1.09009 * 113.68972 * 334.57492 * 15 8 7 34 34 H 1.07994 * 120.04714 * 179.72053 * 16 4 3 35 35 H 1.09009 * 109.47112 * 60.25071 * 18 17 16 36 36 H 0.96696 * 113.99729 * 299.99961 * 19 18 17 37 37 H 1.48493 * 110.00126 * 180.02562 * 20 18 17 38 38 H 1.48504 * 109.99809 * 301.32421 * 20 18 17 39 39 H 1.07994 * 119.80223 * 179.76709 * 21 17 16 40 40 H 1.08001 * 119.95467 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2550 0.0532 0.0022 6 8 3.7095 -1.0334 0.0026 7 7 5.6005 0.1318 0.0032 8 6 6.4057 -1.0920 0.0043 9 1 5.8708 -1.9515 0.4086 10 6 7.0993 -1.3742 -1.3388 11 6 8.3242 -1.8201 -0.5230 12 1 8.3139 -2.8786 -0.2628 13 6 9.6584 -1.3681 -1.1202 14 8 10.0911 -2.3200 -2.0942 15 6 7.8106 -0.9046 0.6008 16 6 4.0667 2.5364 0.0054 17 6 3.3037 3.6837 0.0000 18 6 3.9766 5.0321 0.0010 19 8 4.7913 5.1570 1.1684 20 14 2.6825 6.3721 0.0005 21 6 1.9205 3.6033 -0.0011 22 6 1.2924 2.3739 -0.0010 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 6.0356 0.9987 0.0025 27 1 7.2746 -0.4796 -1.9362 28 1 6.6368 -2.1806 -1.9081 29 1 9.5330 -0.3947 -1.5943 30 1 10.4040 -1.2935 -0.3288 31 1 10.9329 -2.0974 -2.5149 32 1 7.9225 -1.3316 1.5974 33 1 8.1816 0.1183 0.5345 34 1 5.1446 2.6038 0.0104 35 1 4.5994 5.1280 -0.8885 36 1 4.3022 5.0816 1.9991 37 1 3.3333 7.7068 0.0009 38 1 1.8087 6.2339 -1.1923 39 1 1.3303 4.5077 -0.0015 40 1 0.2138 2.3195 -0.0015 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_12496546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:30:05 Heat of formation + Delta-G solvation = -98.625799 kcal Electronic energy + Delta-G solvation = -23678.855587 eV Core-core repulsion = 20040.559656 eV Total energy + Delta-G solvation = -3638.295931 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84977 -40.80797 -39.37147 -39.18268 -37.24308 -37.09591 -34.68577 -32.54472 -31.80559 -28.92115 -28.42427 -26.73879 -26.14974 -25.47550 -23.48168 -22.23271 -21.58303 -20.66635 -19.45746 -18.38407 -18.21899 -18.13889 -17.39510 -16.94072 -16.87940 -16.34057 -16.18387 -15.94500 -15.85151 -15.84640 -15.21195 -15.00987 -14.59309 -14.52663 -14.29117 -13.65086 -13.56901 -13.47893 -13.27135 -13.13025 -12.69886 -12.43991 -12.30333 -12.09364 -12.05570 -11.78629 -11.73225 -11.48354 -11.01121 -10.80716 -10.39074 -10.28508 -10.01185 -9.29179 -4.97202 -0.27962 0.20780 1.34392 1.65149 1.75081 2.00284 2.09089 2.26304 2.66482 3.21929 3.42737 3.48409 3.56956 3.65677 3.68384 3.75543 3.80355 3.96168 4.02910 4.14931 4.29156 4.34991 4.39125 4.41545 4.44701 4.56362 4.62261 4.66156 4.68050 4.71380 4.77868 4.79164 4.91873 4.99539 5.04812 5.09859 5.25985 5.27115 5.54170 5.56278 6.29275 6.50781 6.81348 6.89115 7.19561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.170 3.830 4 C -0.198 4.198 5 C 0.555 3.445 6 O -0.567 6.567 7 N -0.705 5.705 8 C 0.117 3.883 9 H 0.093 0.907 10 C -0.144 4.144 11 C -0.110 4.110 12 H 0.088 0.912 13 C 0.085 3.915 14 O -0.599 6.599 15 C -0.119 4.119 16 C -0.016 4.016 17 C -0.167 4.167 18 C -0.063 4.063 19 O -0.553 6.553 20 Si 0.770 3.230 21 C -0.043 4.043 22 C -0.212 4.212 23 H 0.106 0.894 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.413 0.587 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.396 0.604 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.151 0.849 35 H 0.113 0.887 36 H 0.396 0.604 37 H -0.301 1.301 38 H -0.284 1.284 39 H 0.158 0.842 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 6.124 2.623 6.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.122 3.878 4 C -0.202 4.202 5 C 0.344 3.656 6 O -0.447 6.447 7 N -0.358 5.358 8 C 0.012 3.988 9 H 0.111 0.889 10 C -0.183 4.183 11 C -0.129 4.129 12 H 0.106 0.894 13 C 0.008 3.992 14 O -0.408 6.408 15 C -0.157 4.157 16 C -0.035 4.035 17 C -0.168 4.168 18 C -0.174 4.174 19 O -0.361 6.361 20 Si 0.677 3.323 21 C -0.060 4.060 22 C -0.230 4.230 23 H 0.125 0.875 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.251 0.749 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.246 0.754 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.168 0.832 35 H 0.130 0.870 36 H 0.246 0.754 37 H -0.230 1.230 38 H -0.211 1.211 39 H 0.175 0.825 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.044 5.596 1.952 6.018 hybrid contribution 0.752 0.008 -0.717 1.039 sum -0.291 5.604 1.235 5.746 Atomic orbital electron populations 1.23451 0.76500 1.05457 1.02902 1.86339 1.23247 1.26488 1.86566 1.19433 0.91362 0.85568 0.91476 1.19429 0.91176 0.93987 1.15574 1.18395 0.82838 0.88674 0.75672 1.90805 1.72553 1.30462 1.50862 1.45788 1.05035 1.10152 1.74799 1.22476 0.90647 0.88075 0.97590 0.88890 1.23519 0.96305 1.01639 0.96806 1.22310 0.93305 1.00453 0.96787 0.89351 1.22225 0.94871 0.91230 0.90889 1.86454 1.44913 1.51258 1.58181 1.23288 0.92341 1.01500 0.98585 1.21094 1.00759 0.89100 0.92499 1.20262 0.93815 0.96020 1.06686 1.25039 1.02025 0.98895 0.91400 1.86466 1.38094 1.95308 1.16272 0.93823 0.77929 0.74039 0.86511 1.21287 0.93741 0.97860 0.93130 1.21475 1.01785 0.90884 1.08885 0.87533 0.90529 0.91007 0.74924 0.88827 0.92905 0.92240 0.92006 0.75387 0.89492 0.87081 0.83150 0.86991 0.75417 1.22965 1.21083 0.82524 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.95 8.57 -68.71 -0.59 -3.54 16 3 C 0.17 0.99 6.70 22.84 0.15 1.15 16 4 C -0.20 -1.13 5.89 -20.01 -0.12 -1.25 16 5 C 0.56 5.56 7.76 86.69 0.67 6.24 16 6 O -0.57 -10.88 14.76 16.94 0.25 -10.63 16 7 N -0.71 -1.87 5.30 -443.21 -2.35 -4.22 16 8 C 0.12 0.36 4.24 45.51 0.19 0.56 16 9 H 0.09 0.78 7.47 -2.38 -0.02 0.76 16 10 C -0.14 -0.43 7.43 31.12 0.23 -0.20 16 11 C -0.11 -0.04 4.01 -10.27 -0.04 -0.08 16 12 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 13 C 0.09 -0.15 6.87 71.98 0.49 0.35 16 14 O -0.60 -1.36 13.66 -148.98 -2.03 -3.39 16 15 C -0.12 0.36 7.39 31.12 0.23 0.59 16 16 C -0.02 0.01 9.08 22.52 0.20 0.21 16 17 C -0.17 0.50 5.39 -19.90 -0.11 0.40 16 18 C -0.06 0.29 2.81 71.23 0.20 0.49 16 19 O -0.55 2.35 12.76 -148.98 -1.90 0.45 16 20 Si 0.77 -4.22 29.77 68.60 2.04 -2.18 16 21 C -0.04 0.17 8.66 22.30 0.19 0.37 16 22 C -0.21 0.26 9.03 22.34 0.20 0.47 16 23 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 24 H 0.08 -0.37 7.66 -2.39 -0.02 -0.39 16 25 H 0.07 -0.29 7.66 -2.38 -0.02 -0.31 16 26 H 0.41 -1.55 6.76 -92.71 -0.63 -2.17 16 27 H 0.09 0.09 7.92 -2.39 -0.02 0.07 16 28 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.06 -0.26 7.88 -2.39 -0.02 -0.28 16 30 H 0.06 -0.28 8.14 -2.39 -0.02 -0.29 16 31 H 0.40 -2.57 9.12 -74.06 -0.68 -3.24 16 32 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.11 -0.81 8.08 -2.38 -0.02 -0.83 16 34 H 0.15 -0.74 6.40 -2.91 -0.02 -0.75 16 35 H 0.11 -0.45 7.96 -2.38 -0.02 -0.47 16 36 H 0.40 -4.62 8.70 -74.06 -0.64 -5.26 16 37 H -0.30 -0.83 7.11 99.48 0.71 -0.12 16 38 H -0.28 0.27 7.11 99.48 0.71 0.97 16 39 H 0.16 -1.46 4.85 -2.91 -0.01 -1.47 16 40 H 0.16 -1.04 6.30 -2.91 -0.02 -1.06 16 Total: 0.00 -26.12 331.58 -1.77 -27.89 By element: Atomic # 1 Polarization: -13.97 SS G_CDS: -0.81 Total: -14.78 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 3.62 Total: 10.40 kcal Atomic # 7 Polarization: -1.87 SS G_CDS: -2.35 Total: -4.22 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -4.27 Total: -17.10 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: 2.04 Total: -2.18 kcal Total: -26.12 -1.77 -27.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_12496546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.736 kcal (2) G-P(sol) polarization free energy of solvation -26.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds