Wall clock time and date at job start Sat Mar 6 2021 19:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.46768 * 2 1 4 4 C 1.50699 * 109.47158 * 240.00413 * 2 1 3 5 5 C 1.38271 * 119.94563 * 119.72381 * 4 2 1 6 6 C 1.38146 * 120.05540 * 179.72476 * 5 4 2 7 7 C 1.38728 * 119.94387 * 0.57065 * 6 5 4 8 8 O 1.35895 * 120.05690 * 179.67938 * 7 6 5 9 9 C 1.42897 * 117.00208 * 0.02633 * 8 7 6 10 10 C 1.50699 * 109.47708 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99538 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00519 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00191 * 179.97438 * 12 10 9 14 14 H 1.08991 * 112.84901 * 23.79892 * 13 12 10 15 15 C 1.53780 * 113.61343 * 154.99679 * 13 12 10 16 16 C 1.53777 * 87.08209 * 139.97802 * 15 13 12 17 17 H 1.09006 * 113.61513 * 89.11519 * 16 15 13 18 18 C 1.52998 * 113.61797 * 220.01890 * 16 15 13 19 19 O 1.42907 * 109.47409 * 185.00037 * 18 16 15 20 20 C 1.53780 * 87.08312 * 334.56502 * 16 15 13 21 21 C 1.38735 * 119.89072 * 359.70511 * 7 6 5 22 22 C 1.38147 * 119.94145 * 359.97438 * 21 7 6 23 23 H 0.96698 * 114.00355 * 60.00074 * 1 2 3 24 24 H 1.09000 * 109.47411 * 120.00061 * 2 1 3 25 25 H 1.48506 * 110.00048 * 60.00575 * 3 2 1 26 26 H 1.48502 * 109.99996 * 181.31901 * 3 2 1 27 27 H 1.08003 * 119.96765 * 359.97438 * 5 4 2 28 28 H 1.08003 * 120.02761 * 180.25084 * 6 5 4 29 29 H 1.09001 * 109.46870 * 299.99559 * 9 8 7 30 30 H 1.08995 * 109.47175 * 59.99163 * 9 8 7 31 31 H 0.97004 * 119.99891 * 359.97438 * 12 10 9 32 32 H 1.09001 * 113.61658 * 254.52420 * 15 13 12 33 33 H 1.08998 * 113.61997 * 25.34677 * 15 13 12 34 34 H 1.09007 * 109.46966 * 304.99560 * 18 16 15 35 35 H 1.08997 * 109.47071 * 64.99573 * 18 16 15 36 36 H 0.96699 * 113.99818 * 179.97438 * 19 18 16 37 37 H 1.08999 * 113.61476 * 270.88685 * 20 16 15 38 38 H 1.09001 * 113.61711 * 139.97614 * 20 16 15 39 39 H 1.07993 * 120.03312 * 179.97438 * 21 7 6 40 40 H 1.07997 * 119.97419 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7214 -0.0355 -2.1428 6 6 3.1879 -0.6861 -3.2687 7 6 2.8531 -2.0141 -3.4896 8 8 3.3053 -2.6544 -4.5997 9 6 4.1218 -1.8992 -5.4969 10 6 4.5253 -2.7674 -6.6607 11 8 4.1509 -3.9197 -6.7161 12 7 5.3030 -2.2638 -7.6394 13 6 5.6957 -3.1080 -8.7705 14 1 5.0082 -3.9368 -8.9388 15 6 6.0279 -2.3146 -10.0452 16 6 7.1883 -3.3002 -10.2619 17 1 6.9099 -4.1825 -10.8382 18 6 8.4694 -2.6364 -10.7706 19 8 9.4471 -3.6403 -11.0510 20 6 7.1748 -3.5283 -8.7411 21 6 2.0554 -2.6873 -2.5757 22 6 1.5970 -2.0342 -1.4480 23 1 -0.3934 0.4417 -0.7650 24 1 1.7923 -0.5138 0.8900 25 1 1.5614 2.4679 1.2086 26 1 3.5344 1.7704 -0.0321 27 1 2.9775 0.9999 -1.9728 28 1 3.8084 -0.1597 -3.9789 29 1 3.5603 -1.0396 -5.8630 30 1 5.0137 -1.5545 -4.9738 31 1 5.6028 -1.3423 -7.5950 32 1 5.2548 -2.3752 -10.8112 33 1 6.3522 -1.2922 -9.8512 34 1 8.2521 -2.0768 -11.6805 35 1 8.8538 -1.9574 -10.0095 36 1 10.2870 -3.2906 -11.3789 37 1 7.8139 -2.8381 -8.1904 38 1 7.3274 -4.5687 -8.4542 39 1 1.7931 -3.7210 -2.7457 40 1 0.9757 -2.5576 -0.7365 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_2989410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:31:24 Heat of formation + Delta-G solvation = -101.225540 kcal Electronic energy + Delta-G solvation = -22523.464240 eV Core-core repulsion = 18885.055576 eV Total energy + Delta-G solvation = -3638.408665 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64643 -40.99984 -39.77496 -38.87304 -37.26634 -37.08405 -34.69143 -32.40248 -31.73057 -30.06705 -28.34514 -26.72434 -26.21818 -24.26718 -23.30868 -22.28806 -21.71322 -20.64685 -19.50892 -18.48467 -18.21998 -18.03778 -17.47548 -17.39646 -16.82508 -16.44011 -16.31913 -15.98343 -15.71922 -15.57454 -15.21215 -15.13716 -14.65239 -14.43999 -14.32357 -13.77465 -13.62833 -13.51288 -13.45341 -13.28916 -12.71150 -12.35036 -12.23210 -12.07320 -12.05365 -11.74158 -11.72471 -11.48044 -11.00816 -10.79240 -10.40304 -10.14606 -10.04972 -9.23034 -4.98199 0.26937 0.30189 1.34920 1.40548 1.48398 1.65341 1.99691 2.59130 2.65371 3.23607 3.42739 3.51935 3.56973 3.67357 3.74178 3.78044 3.82942 3.95326 4.01729 4.03839 4.09991 4.30410 4.41360 4.43258 4.45545 4.50739 4.63939 4.66391 4.70265 4.76805 4.81268 4.96628 4.99873 5.05732 5.15238 5.23249 5.24808 5.49362 5.51946 5.69468 6.26006 6.46604 6.80272 6.90404 7.11774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.075 4.075 3 Si 0.784 3.216 4 C -0.161 4.161 5 C -0.075 4.075 6 C -0.199 4.199 7 C 0.120 3.880 8 O -0.322 6.322 9 C 0.037 3.963 10 C 0.511 3.489 11 O -0.577 6.577 12 N -0.697 5.697 13 C 0.116 3.884 14 H 0.090 0.910 15 C -0.117 4.117 16 C -0.114 4.114 17 H 0.084 0.916 18 C 0.085 3.915 19 O -0.602 6.602 20 C -0.144 4.144 21 C -0.168 4.168 22 C -0.061 4.061 23 H 0.395 0.605 24 H 0.102 0.898 25 H -0.304 1.304 26 H -0.280 1.280 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.423 0.577 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.125 0.875 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 10.141 -4.640 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.184 4.184 3 Si 0.691 3.309 4 C -0.162 4.162 5 C -0.093 4.093 6 C -0.217 4.217 7 C 0.075 3.925 8 O -0.235 6.235 9 C -0.041 4.041 10 C 0.297 3.703 11 O -0.455 6.455 12 N -0.351 5.351 13 C 0.011 3.989 14 H 0.108 0.892 15 C -0.155 4.155 16 C -0.133 4.133 17 H 0.102 0.898 18 C 0.007 3.993 19 O -0.410 6.410 20 C -0.183 4.183 21 C -0.186 4.186 22 C -0.079 4.079 23 H 0.245 0.755 24 H 0.119 0.881 25 H -0.233 1.233 26 H -0.207 1.207 27 H 0.172 0.828 28 H 0.184 0.816 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.262 0.738 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.143 0.857 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.069 9.014 -3.587 10.176 hybrid contribution 0.632 -0.457 0.149 0.794 sum 3.701 8.557 -3.438 9.937 Atomic orbital electron populations 1.86462 1.17511 1.82234 1.50498 1.25208 0.85148 1.11153 0.96914 0.93739 0.77715 0.74776 0.84719 1.20370 1.02099 0.95253 0.98456 1.21077 0.95396 1.00076 0.92728 1.21514 1.05711 0.93166 1.01341 1.19213 0.94656 0.92077 0.86526 1.86131 1.65158 1.40484 1.31734 1.22768 0.97746 0.94274 0.89284 1.20674 0.77983 0.87565 0.84042 1.90766 1.55900 1.20456 1.78425 1.45657 1.51121 1.16653 1.21627 1.22478 0.95402 0.94897 0.86079 0.89201 1.23290 0.97045 0.99478 0.95640 1.22332 0.95164 0.99936 0.95865 0.89754 1.22252 0.87687 0.89578 0.99740 1.86459 1.28262 1.37460 1.88867 1.23549 0.96408 1.01832 0.96517 1.20622 1.01617 1.01253 0.95156 1.20895 0.97199 0.94117 0.95711 0.75511 0.88057 1.23280 1.20725 0.82833 0.81585 0.85131 0.85654 0.73797 0.89680 0.86414 0.92098 0.91883 0.75373 0.88157 0.93140 0.85736 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.30 12.77 -148.98 -1.90 -2.20 16 2 C -0.07 0.05 2.82 71.24 0.20 0.25 16 3 Si 0.78 -2.86 29.78 68.60 2.04 -0.82 16 4 C -0.16 -0.01 5.39 -19.85 -0.11 -0.12 16 5 C -0.08 0.25 8.66 22.26 0.19 0.45 16 6 C -0.20 0.64 9.04 22.37 0.20 0.84 16 7 C 0.12 0.39 6.69 22.51 0.15 0.54 16 8 O -0.32 -1.91 9.67 -73.34 -0.71 -2.61 16 9 C 0.04 -0.14 5.22 71.24 0.37 0.23 16 10 C 0.51 1.36 7.91 87.66 0.69 2.06 16 11 O -0.58 -8.84 16.10 16.00 0.26 -8.59 16 12 N -0.70 3.38 5.35 -440.05 -2.36 1.03 16 13 C 0.12 -0.19 4.24 45.52 0.19 0.01 16 14 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 15 C -0.12 0.85 7.39 31.12 0.23 1.08 16 16 C -0.11 0.30 4.01 -10.27 -0.04 0.26 16 17 H 0.08 0.09 8.14 -2.38 -0.02 0.07 16 18 C 0.08 -0.38 6.89 71.98 0.50 0.12 16 19 O -0.60 -0.21 13.66 -148.98 -2.04 -2.25 16 20 C -0.14 0.14 7.43 31.12 0.23 0.37 16 21 C -0.17 -0.87 9.99 22.37 0.22 -0.64 16 22 C -0.06 -0.19 9.60 22.25 0.21 0.02 16 23 H 0.39 -3.04 8.70 -74.06 -0.64 -3.68 16 24 H 0.10 0.12 7.96 -2.39 -0.02 0.10 16 25 H -0.30 -1.40 7.11 99.48 0.71 -0.70 16 26 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 27 H 0.15 -1.34 4.87 -2.91 -0.01 -1.36 16 28 H 0.17 -1.82 6.30 -2.91 -0.02 -1.84 16 29 H 0.13 -1.46 7.66 -2.39 -0.02 -1.48 16 30 H 0.13 -1.29 7.66 -2.39 -0.02 -1.31 16 31 H 0.42 -5.73 8.73 -92.71 -0.81 -6.54 16 32 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.12 -1.48 8.08 -2.39 -0.02 -1.50 16 34 H 0.06 -0.43 8.14 -2.38 -0.02 -0.45 16 35 H 0.06 -0.49 7.84 -2.39 -0.02 -0.51 16 36 H 0.40 -3.28 9.12 -74.06 -0.68 -3.95 16 37 H 0.10 -0.41 7.90 -2.39 -0.02 -0.42 16 38 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.12 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.13 0.33 8.06 -2.91 -0.02 0.30 16 Total: 0.00 -29.41 337.79 -2.45 -31.87 By element: Atomic # 1 Polarization: -20.87 SS G_CDS: -1.00 Total: -21.88 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 3.25 Total: 5.46 kcal Atomic # 7 Polarization: 3.38 SS G_CDS: -2.36 Total: 1.03 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -4.39 Total: -15.65 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.04 Total: -0.82 kcal Total: -29.41 -2.45 -31.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_2989410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.360 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds