Wall clock time and date at job start Sat Mar 6 2021 19:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86295 * 109.47182 * 2 1 4 4 C 1.50704 * 109.47219 * 239.99680 * 2 1 3 5 5 C 1.38249 * 119.96746 * 120.00115 * 4 2 1 6 6 C 1.38284 * 120.10741 * 180.02562 * 5 4 2 7 7 C 1.38125 * 120.05583 * 0.02562 * 6 5 4 8 8 C 1.38747 * 119.94866 * 359.97438 * 7 6 5 9 9 O 1.35895 * 120.06122 * 180.02562 * 8 7 6 10 10 C 1.42897 * 116.99831 * 0.02562 * 9 8 7 11 11 C 1.52999 * 109.47332 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47272 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46980 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00003 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99945 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00274 * 179.97438 * 15 13 12 17 17 H 1.09002 * 112.90477 * 336.24972 * 16 15 13 18 18 C 1.53779 * 113.61581 * 107.50145 * 16 15 13 19 19 C 1.53779 * 87.08402 * 139.98450 * 18 16 15 20 20 H 1.09000 * 113.61527 * 89.11480 * 19 18 16 21 21 C 1.53000 * 113.61731 * 220.02348 * 19 18 16 22 22 O 1.42904 * 109.46797 * 272.49576 * 21 19 18 23 23 C 1.53784 * 113.61569 * 204.99925 * 16 15 13 24 24 C 1.38156 * 119.97194 * 300.25656 * 4 2 1 25 25 H 0.96706 * 113.99445 * 60.00291 * 1 2 3 26 26 H 1.09001 * 109.46667 * 119.99641 * 2 1 3 27 27 H 1.48505 * 110.00457 * 59.99718 * 3 2 1 28 28 H 1.48503 * 110.00358 * 181.31555 * 3 2 1 29 29 H 1.07999 * 119.94857 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.97354 * 179.97438 * 6 5 4 31 31 H 1.07998 * 120.02714 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.47273 * 59.99735 * 10 9 8 33 33 H 1.08997 * 109.47200 * 300.00270 * 10 9 8 34 34 H 1.09005 * 109.47013 * 59.99753 * 11 10 9 35 35 H 1.09000 * 109.46896 * 300.00139 * 11 10 9 36 36 H 1.08991 * 109.47306 * 59.99785 * 12 11 10 37 37 H 1.09001 * 109.46599 * 299.99778 * 12 11 10 38 38 H 0.97009 * 120.00192 * 359.97438 * 15 13 12 39 39 H 1.09006 * 113.61307 * 25.43652 * 18 16 15 40 40 H 1.09007 * 113.61642 * 254.53409 * 18 16 15 41 41 H 1.09003 * 109.47303 * 32.48927 * 21 19 18 42 42 H 1.08993 * 109.47406 * 152.49206 * 21 19 18 43 43 H 0.96703 * 114.00131 * 179.97438 * 22 21 19 44 44 H 1.09004 * 113.61451 * 105.47149 * 23 16 15 45 45 H 1.08994 * 113.61477 * 334.56451 * 23 16 15 46 46 H 1.07996 * 120.03105 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7262 -0.0380 -2.1400 6 6 3.1884 -0.6870 -3.2703 7 6 2.8563 -2.0090 -3.4934 8 6 2.0588 -2.6862 -2.5821 9 8 1.7311 -3.9870 -2.7990 10 6 2.2430 -4.5957 -3.9862 11 6 1.7726 -6.0498 -4.0575 12 6 2.3213 -6.7016 -5.3283 13 6 1.8573 -8.1338 -5.3988 14 8 1.1572 -8.5884 -4.5189 15 7 2.2204 -8.9093 -6.4395 16 6 1.7700 -10.3016 -6.5078 17 1 1.5206 -10.7152 -5.5306 18 6 0.6904 -10.5482 -7.5748 19 6 1.4143 -11.8679 -7.8895 20 1 1.0677 -12.7098 -7.2901 21 6 1.4819 -12.1887 -9.3840 22 8 0.3055 -12.9012 -9.7718 23 6 2.6908 -11.2067 -7.3431 24 6 1.5930 -2.0316 -1.4511 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5615 2.4680 1.2085 28 1 3.5347 1.7703 -0.0320 29 1 2.9867 0.9958 -1.9676 30 1 3.8088 -0.1594 -3.9797 31 1 3.2171 -2.5153 -4.3765 32 1 3.3325 -4.5671 -3.9684 33 1 1.8796 -4.0527 -4.8586 34 1 0.6831 -6.0788 -4.0751 35 1 2.1364 -6.5925 -3.1850 36 1 3.4106 -6.6727 -5.3103 37 1 1.9577 -6.1590 -6.2009 38 1 2.7801 -8.5455 -7.1434 39 1 0.7150 -9.8304 -8.3948 40 1 -0.3088 -10.6860 -7.1614 41 1 1.5485 -11.2609 -9.9521 42 1 2.3606 -12.8015 -9.5847 43 1 0.2799 -13.1378 -10.7091 44 1 3.3066 -11.8763 -6.7426 45 1 3.2621 -10.6691 -8.0997 46 1 0.9690 -2.5554 -0.7421 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12366696_4549616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:31:33 Heat of formation + Delta-G solvation = -112.670309 kcal Electronic energy + Delta-G solvation = -25595.730558 eV Core-core repulsion = 21645.750373 eV Total energy + Delta-G solvation = -3949.980185 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36072 -41.16816 -39.75367 -39.11822 -37.34394 -37.24242 -34.91900 -34.48578 -32.43584 -31.24994 -29.31098 -28.04181 -26.82935 -26.77805 -24.20582 -23.64800 -22.75802 -21.84456 -21.52007 -20.64324 -19.16967 -18.36715 -18.10557 -17.79092 -17.52079 -17.40784 -17.14047 -16.80368 -16.45441 -16.39761 -16.07412 -15.50360 -15.39408 -15.22684 -14.83603 -14.62563 -14.47592 -14.15834 -14.12321 -13.61640 -13.58699 -13.41851 -13.20337 -13.03768 -12.77332 -12.73970 -12.40549 -12.31604 -12.23864 -11.89964 -11.81249 -11.67188 -11.58682 -11.55715 -10.95146 -10.82247 -10.48001 -10.06722 -9.88739 -9.20910 -5.02059 0.23378 0.43724 1.29291 1.59686 1.64737 1.87442 1.99282 2.33755 2.70399 3.07045 3.35546 3.47064 3.51925 3.57697 3.65494 3.71397 3.78753 3.80505 3.89201 3.90938 4.01725 4.12648 4.17036 4.21314 4.24644 4.28258 4.34469 4.40004 4.42948 4.47546 4.54368 4.56502 4.64801 4.65230 4.75288 4.93747 4.95078 4.99610 4.99796 5.14676 5.22986 5.30124 5.39051 5.46323 5.49752 5.71920 6.41791 6.43625 6.59031 6.61277 7.18786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.070 4.070 3 Si 0.694 3.306 4 C -0.081 4.081 5 C -0.157 4.157 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.132 3.868 9 O -0.311 6.311 10 C 0.060 3.940 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.514 3.486 14 O -0.534 6.534 15 N -0.722 5.722 16 C 0.121 3.879 17 H 0.117 0.883 18 C -0.144 4.144 19 C -0.110 4.110 20 H 0.103 0.897 21 C 0.087 3.913 22 O -0.573 6.573 23 C -0.138 4.138 24 C -0.126 4.126 25 H 0.379 0.621 26 H 0.115 0.885 27 H -0.255 1.255 28 H -0.258 1.258 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.401 0.599 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.381 0.619 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 1.927 -8.186 9.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.181 4.181 3 Si 0.596 3.404 4 C -0.081 4.081 5 C -0.175 4.175 6 C -0.092 4.092 7 C -0.224 4.224 8 C 0.087 3.913 9 O -0.225 6.225 10 C -0.015 4.015 11 C -0.143 4.143 12 C -0.178 4.178 13 C 0.301 3.699 14 O -0.409 6.409 15 N -0.374 5.374 16 C 0.016 3.984 17 H 0.135 0.865 18 C -0.183 4.183 19 C -0.129 4.129 20 H 0.121 0.879 21 C 0.009 3.991 22 O -0.379 6.379 23 C -0.177 4.177 24 C -0.145 4.145 25 H 0.227 0.773 26 H 0.133 0.867 27 H -0.180 1.180 28 H -0.183 1.183 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.236 0.764 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.228 0.772 44 H 0.099 0.901 45 H 0.107 0.893 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.133 1.829 -5.794 7.349 hybrid contribution 0.791 -0.550 -1.174 1.519 sum 4.924 1.279 -6.969 8.628 Atomic orbital electron populations 1.86519 1.16922 1.81721 1.49212 1.25124 0.85386 1.10244 0.97350 0.94622 0.80904 0.77843 0.87064 1.20146 0.97476 0.93936 0.96557 1.20921 1.01127 0.99812 0.95621 1.20908 0.97818 0.93743 0.96683 1.21310 1.03585 0.96517 1.01037 1.19029 0.94360 0.83477 0.94434 1.86088 1.70896 1.22397 1.43084 1.22824 0.98550 0.93927 0.86242 1.21234 1.03069 0.92263 0.97782 1.21537 1.02999 0.92994 1.00289 1.20618 0.79895 0.88049 0.81344 1.90755 1.37043 1.74841 1.38308 1.46002 1.53934 1.12232 1.25199 1.22517 0.95274 0.80826 0.99750 0.86464 1.23524 0.99351 0.96562 0.98831 1.22349 0.97033 0.97989 0.95481 0.87913 1.22143 0.87388 0.95044 0.94499 1.86502 1.42447 1.77712 1.31211 1.23361 0.96559 0.98426 0.99310 1.20272 1.03018 0.94001 0.97180 0.77322 0.86734 1.17979 1.18309 0.85456 0.85229 0.85276 0.91816 0.91736 0.89751 0.89811 0.88374 0.88364 0.76428 0.89681 0.90616 0.93528 0.93396 0.77204 0.90134 0.89335 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.54 12.76 -35.23 -0.45 -0.99 16 2 C -0.07 -0.04 2.82 36.01 0.10 0.07 16 3 Si 0.69 -0.52 29.79 -169.99 -5.06 -5.58 16 4 C -0.08 -0.09 5.39 -104.65 -0.56 -0.65 16 5 C -0.16 0.00 8.67 -39.56 -0.34 -0.34 16 6 C -0.07 0.02 10.04 -39.61 -0.40 -0.37 16 7 C -0.21 -0.08 9.04 -39.43 -0.36 -0.43 16 8 C 0.13 0.30 6.69 -39.21 -0.26 0.03 16 9 O -0.31 -0.80 10.14 -19.41 -0.20 -0.99 16 10 C 0.06 -0.05 4.74 37.16 0.18 0.12 16 11 C -0.11 0.03 4.87 -26.73 -0.13 -0.10 16 12 C -0.14 0.37 5.70 -27.88 -0.16 0.21 16 13 C 0.51 0.33 7.83 -10.99 -0.09 0.25 16 14 O -0.53 -2.89 15.58 5.55 0.09 -2.80 16 15 N -0.72 1.22 5.35 -53.02 -0.28 0.93 16 16 C 0.12 -0.08 4.24 -67.12 -0.28 -0.36 16 17 H 0.12 0.17 7.47 -51.93 -0.39 -0.22 16 18 C -0.14 0.06 7.43 -25.92 -0.19 -0.13 16 19 C -0.11 0.10 4.01 -89.81 -0.36 -0.26 16 20 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 21 C 0.09 -0.12 6.88 37.16 0.26 0.14 16 22 O -0.57 -0.27 13.66 -35.23 -0.48 -0.75 16 23 C -0.14 0.35 7.39 -25.91 -0.19 0.15 16 24 C -0.13 -0.31 9.55 -39.43 -0.38 -0.69 16 25 H 0.38 -1.11 8.70 45.56 0.40 -0.72 16 26 H 0.12 0.11 7.96 -51.93 -0.41 -0.30 16 27 H -0.25 -0.63 7.11 56.52 0.40 -0.23 16 28 H -0.26 -0.38 7.11 56.52 0.40 0.02 16 29 H 0.13 -0.24 4.87 -52.49 -0.26 -0.50 16 30 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 31 H 0.13 -0.23 6.30 -52.49 -0.33 -0.56 16 32 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 33 H 0.06 -0.15 7.66 -51.93 -0.40 -0.55 16 34 H 0.08 0.12 8.10 -51.93 -0.42 -0.30 16 35 H 0.08 0.12 8.10 -51.93 -0.42 -0.30 16 36 H 0.10 -0.46 8.14 -51.93 -0.42 -0.88 16 37 H 0.10 -0.46 8.14 -51.93 -0.42 -0.88 16 38 H 0.40 -1.89 8.73 -40.82 -0.36 -2.24 16 39 H 0.08 -0.10 7.90 -51.93 -0.41 -0.51 16 40 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.05 -0.11 7.84 -51.93 -0.41 -0.52 16 42 H 0.05 -0.11 8.14 -51.93 -0.42 -0.53 16 43 H 0.38 -1.43 9.12 45.56 0.42 -1.01 16 44 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 45 H 0.09 -0.35 8.08 -51.93 -0.42 -0.77 16 46 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 LS Contribution 380.24 15.07 5.73 5.73 Total: 0.00 -10.32 380.24 -10.21 -20.54 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -6.39 Total: -13.71 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.17 Total: -2.37 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -0.28 Total: 0.93 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -1.04 Total: -5.54 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: -5.06 Total: -5.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -10.32 -10.21 -20.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_4549616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.132 kcal (2) G-P(sol) polarization free energy of solvation -10.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds