Wall clock time and date at job start Sat Mar 6 2021 19:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47037 * 2 1 4 4 C 1.50697 * 109.47084 * 119.99477 * 2 1 3 5 5 C 1.38248 * 119.97634 * 245.02787 * 4 2 1 6 6 C 1.38291 * 120.11188 * 179.97438 * 5 4 2 7 7 C 1.38119 * 120.05462 * 0.03793 * 6 5 4 8 8 C 1.38748 * 119.94679 * 359.95481 * 7 6 5 9 9 O 1.35903 * 120.05538 * 180.29465 * 8 7 6 10 10 C 1.42895 * 117.00049 * 359.73131 * 9 8 7 11 11 C 1.50700 * 109.47241 * 179.97438 * 10 9 8 12 12 C 1.39552 * 120.07332 * 180.02562 * 11 10 9 13 13 C 1.47846 * 120.14857 * 359.97438 * 12 11 10 14 14 O 1.21554 * 119.99635 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00163 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99994 * 179.97438 * 15 13 12 17 17 H 1.09005 * 112.85311 * 336.20179 * 16 15 13 18 18 C 1.53781 * 113.61433 * 107.50114 * 16 15 13 19 19 C 1.53774 * 87.08181 * 139.98395 * 18 16 15 20 20 H 1.08999 * 113.69349 * 89.13261 * 19 18 16 21 21 C 1.53004 * 113.61534 * 220.01827 * 19 18 16 22 22 O 1.42897 * 109.47409 * 272.49994 * 21 19 18 23 23 C 1.53773 * 87.08254 * 334.56924 * 19 18 16 24 24 C 1.39606 * 119.71167 * 179.97438 * 12 11 10 25 25 C 1.37931 * 119.84818 * 359.97438 * 24 12 11 26 26 C 1.38383 * 120.15159 * 0.02562 * 25 24 12 27 27 C 1.37981 * 120.07355 * 359.72069 * 11 10 9 28 28 C 1.38165 * 119.97014 * 65.00117 * 4 2 1 29 29 H 0.96707 * 113.99754 * 60.00542 * 1 2 3 30 30 H 1.08995 * 109.47604 * 239.99993 * 2 1 3 31 31 H 1.48505 * 110.00114 * 298.67949 * 3 2 1 32 32 H 1.48498 * 110.00288 * 59.99553 * 3 2 1 33 33 H 1.08000 * 119.94403 * 359.97308 * 5 4 2 34 34 H 1.08000 * 119.96956 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.02414 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47202 * 299.99846 * 10 9 8 37 37 H 1.08999 * 109.47281 * 59.99918 * 10 9 8 38 38 H 0.97001 * 120.00266 * 359.97438 * 15 13 12 39 39 H 1.09001 * 113.61781 * 254.53615 * 18 16 15 40 40 H 1.09004 * 113.61646 * 25.43442 * 18 16 15 41 41 H 1.09005 * 109.46657 * 32.50457 * 21 19 18 42 42 H 1.09004 * 109.47335 * 152.49516 * 21 19 18 43 43 H 0.96696 * 113.99969 * 179.97438 * 22 21 19 44 44 H 1.09007 * 113.61927 * 270.88400 * 23 19 18 45 45 H 1.09003 * 113.61694 * 139.98071 * 23 19 18 46 46 H 1.08001 * 120.07479 * 180.02562 * 24 12 11 47 47 H 1.08007 * 119.92585 * 179.97438 * 25 24 12 48 48 H 1.07998 * 119.85389 * 179.97438 * 26 25 24 49 49 H 1.08003 * 119.92372 * 0.02562 * 27 11 10 50 50 H 1.08000 * 120.02914 * 0.04923 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6382 -0.0114 2.1913 6 6 3.1000 -0.6603 3.3218 7 6 2.8566 -2.0090 3.4933 8 6 2.1472 -2.7127 2.5306 9 8 1.9012 -4.0385 2.7000 10 6 2.4076 -4.6454 3.8904 11 6 2.0399 -6.1068 3.9048 12 6 2.4270 -6.9147 4.9748 13 6 3.1991 -6.3408 6.0973 14 8 3.4986 -5.1627 6.0894 15 7 3.5718 -7.1239 7.1289 16 6 4.3374 -6.5552 8.2410 17 1 4.8880 -5.6573 7.9605 18 6 3.5214 -6.4004 9.5352 19 6 4.7763 -6.8699 10.2897 20 1 5.4474 -6.0585 10.5713 21 6 4.4742 -7.8205 11.4499 22 8 4.2150 -7.0615 12.6325 23 6 5.1894 -7.5898 8.9951 24 6 2.0818 -8.2675 4.9806 25 6 1.3609 -8.7965 3.9305 26 6 0.9802 -7.9899 2.8725 27 6 1.3145 -6.6475 2.8631 28 6 1.6845 -2.0594 1.3978 29 1 -0.3933 0.4417 -0.7652 30 1 1.7924 -0.5138 -0.8899 31 1 1.5879 2.4586 -1.2243 32 1 1.5614 2.4680 1.2084 33 1 2.8301 1.0431 2.0587 34 1 3.6517 -0.1120 4.0711 35 1 3.2171 -2.5152 4.3766 36 1 3.4925 -4.5430 3.9173 37 1 1.9746 -4.1536 4.7615 38 1 3.3331 -8.0641 7.1351 39 1 3.2404 -5.3701 9.7537 40 1 2.6831 -7.0933 9.6084 41 1 3.5998 -8.4242 11.2066 42 1 5.3310 -8.4732 11.6175 43 1 4.0149 -7.6006 13.4099 44 1 4.8072 -8.6079 8.9205 45 1 6.2552 -7.5197 8.7775 46 1 2.3779 -8.8980 5.8059 47 1 1.0935 -9.8430 3.9335 48 1 0.4161 -8.4092 2.0525 49 1 1.0105 -6.0222 2.0366 50 1 1.1325 -2.6050 0.6468 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_4557126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:31:56 Heat of formation + Delta-G solvation = -67.619504 kcal Electronic energy + Delta-G solvation = -32410.257680 eV Core-core repulsion = 27949.326482 eV Total energy + Delta-G solvation = -4460.931197 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.85230 -41.22212 -40.32956 -39.22258 -38.85351 -37.46301 -37.25624 -34.88495 -33.32644 -32.65144 -32.15532 -31.04546 -28.87559 -27.84557 -26.73915 -26.64998 -25.15360 -23.84572 -23.48515 -22.63882 -21.83253 -21.53715 -20.67522 -18.95569 -18.90147 -18.58024 -18.20697 -17.66077 -17.42616 -17.33284 -17.18465 -16.53882 -16.44382 -16.13245 -16.10687 -15.92974 -15.59497 -15.49353 -15.25072 -14.86564 -14.61735 -14.58538 -14.26407 -14.18331 -14.00095 -13.64587 -13.49258 -13.47103 -13.35334 -13.26818 -12.84312 -12.66407 -12.50004 -12.33933 -12.22059 -12.14803 -12.02860 -11.73579 -11.72460 -11.47994 -10.93064 -10.79355 -10.55606 -10.26826 -9.98811 -9.96389 -9.82105 -9.30803 -4.92235 -0.27623 0.15375 0.25649 0.34966 1.26856 1.59881 1.73831 1.91288 2.00906 2.02365 2.58176 2.72076 3.22913 3.35190 3.42681 3.52103 3.57046 3.68030 3.75981 3.78932 3.79369 3.84640 4.01736 4.03370 4.07456 4.14452 4.21943 4.23037 4.29248 4.37361 4.41854 4.42501 4.45308 4.48359 4.62912 4.63728 4.68976 4.70608 4.79033 4.80084 4.89569 4.93207 5.00026 5.04890 5.17445 5.20903 5.23768 5.32811 5.34894 5.41323 5.43375 5.52525 5.67420 5.81840 6.29500 6.41812 6.57229 6.89423 7.06979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.090 4.090 3 Si 0.773 3.227 4 C -0.046 4.046 5 C -0.159 4.159 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.117 3.883 9 O -0.326 6.326 10 C 0.117 3.883 11 C -0.053 4.053 12 C -0.149 4.149 13 C 0.554 3.446 14 O -0.572 6.572 15 N -0.699 5.699 16 C 0.117 3.883 17 H 0.097 0.903 18 C -0.144 4.144 19 C -0.112 4.112 20 H 0.087 0.913 21 C 0.084 3.916 22 O -0.601 6.601 23 C -0.120 4.120 24 C -0.076 4.076 25 C -0.123 4.123 26 C -0.089 4.089 27 C -0.123 4.123 28 C -0.140 4.140 29 H 0.396 0.604 30 H 0.097 0.903 31 H -0.281 1.281 32 H -0.297 1.297 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.416 0.584 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.396 0.604 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.162 0.838 47 H 0.163 0.837 48 H 0.152 0.848 49 H 0.132 0.868 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 -7.865 0.435 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.198 4.198 3 Si 0.678 3.322 4 C -0.046 4.046 5 C -0.176 4.176 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.072 3.928 9 O -0.240 6.240 10 C 0.043 3.957 11 C -0.054 4.054 12 C -0.152 4.152 13 C 0.343 3.657 14 O -0.453 6.453 15 N -0.350 5.350 16 C 0.013 3.987 17 H 0.115 0.885 18 C -0.182 4.182 19 C -0.131 4.131 20 H 0.105 0.895 21 C 0.007 3.993 22 O -0.409 6.409 23 C -0.158 4.158 24 C -0.094 4.094 25 C -0.140 4.140 26 C -0.107 4.107 27 C -0.141 4.141 28 C -0.159 4.159 29 H 0.246 0.754 30 H 0.115 0.885 31 H -0.208 1.208 32 H -0.225 1.225 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.255 0.745 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.246 0.754 44 H 0.131 0.869 45 H 0.104 0.896 46 H 0.179 0.821 47 H 0.181 0.819 48 H 0.170 0.830 49 H 0.150 0.850 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.646 -6.196 0.465 6.753 hybrid contribution -1.375 -0.659 0.166 1.534 sum 1.271 -6.855 0.631 7.000 Atomic orbital electron populations 1.86559 1.18426 1.80829 1.51063 1.25125 0.84194 1.12435 0.98070 0.93941 0.90313 0.71459 0.76518 1.19294 0.96985 0.92661 0.95695 1.21161 1.01364 1.00536 0.94550 1.21208 0.97373 0.93302 0.97367 1.21538 1.04293 0.96599 1.00532 1.19136 0.95788 0.82864 0.95051 1.85924 1.74579 1.20510 1.43024 1.21506 0.98934 0.90211 0.85069 1.19711 0.97519 0.93417 0.94748 1.19681 1.04481 0.95647 0.95358 1.18549 0.78808 0.85806 0.82513 1.90738 1.57234 1.17439 1.79923 1.45757 1.55512 1.13614 1.20112 1.22518 0.93631 0.98467 0.84117 0.88488 1.23529 0.97827 1.01894 0.94995 1.22320 0.98036 0.99301 0.93409 0.89455 1.22247 1.00068 0.92681 0.84295 1.86453 1.93509 1.39477 1.21490 1.23300 1.00963 0.99143 0.92357 1.21594 0.95928 0.92343 0.99578 1.21582 0.97533 1.01810 0.93107 1.21772 0.97122 0.92736 0.99094 1.21123 0.98231 0.96469 0.98304 1.20327 1.03678 0.94424 0.97433 0.75365 0.88545 1.20842 1.22504 0.83667 0.82910 0.84888 0.90355 0.90883 0.74547 0.92842 0.88643 0.92115 0.92106 0.75389 0.86891 0.89567 0.82085 0.81939 0.83022 0.84999 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.96 12.81 -148.98 -1.91 -4.87 16 2 C -0.09 -0.23 2.79 71.24 0.20 -0.03 16 3 Si 0.77 -0.12 29.85 68.60 2.05 1.93 16 4 C -0.05 -0.33 5.38 -19.88 -0.11 -0.43 16 5 C -0.16 -0.83 8.67 22.28 0.19 -0.64 16 6 C -0.07 -0.42 10.04 22.25 0.22 -0.20 16 7 C -0.21 -1.91 9.04 22.36 0.20 -1.71 16 8 C 0.12 1.29 6.69 22.51 0.15 1.44 16 9 O -0.33 -3.63 8.62 -92.45 -0.80 -4.43 16 10 C 0.12 1.14 3.38 71.24 0.24 1.38 16 11 C -0.05 -0.36 5.91 -19.61 -0.12 -0.47 16 12 C -0.15 -0.48 5.87 -20.09 -0.12 -0.60 16 13 C 0.55 2.86 7.75 86.79 0.67 3.53 16 14 O -0.57 -6.96 13.01 -3.89 -0.05 -7.01 16 15 N -0.70 1.29 5.31 -442.91 -2.35 -1.06 16 16 C 0.12 -0.09 4.24 45.52 0.19 0.10 16 17 H 0.10 0.39 7.46 -2.38 -0.02 0.38 16 18 C -0.14 0.03 7.43 31.12 0.23 0.26 16 19 C -0.11 0.23 4.01 -10.27 -0.04 0.19 16 20 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 21 C 0.08 -0.31 6.88 71.98 0.50 0.18 16 22 O -0.60 -0.47 13.66 -148.98 -2.04 -2.51 16 23 C -0.12 0.73 7.39 31.12 0.23 0.96 16 24 C -0.08 0.28 9.54 22.53 0.21 0.49 16 25 C -0.12 0.56 10.03 22.23 0.22 0.78 16 26 C -0.09 0.12 10.04 22.33 0.22 0.35 16 27 C -0.12 -0.52 9.37 22.23 0.21 -0.31 16 28 C -0.14 -1.37 9.62 22.37 0.22 -1.15 16 29 H 0.40 -1.38 8.74 -74.05 -0.65 -2.03 16 30 H 0.10 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H -0.28 -0.87 7.11 99.48 0.71 -0.17 16 32 H -0.30 -2.06 7.05 99.48 0.70 -1.36 16 33 H 0.15 0.12 4.86 -2.91 -0.01 0.10 16 34 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 35 H 0.13 1.19 6.30 -2.91 -0.02 1.17 16 36 H 0.08 0.86 6.87 -2.39 -0.02 0.85 16 37 H 0.07 0.88 6.86 -2.39 -0.02 0.86 16 38 H 0.42 -3.60 6.76 -92.71 -0.63 -4.23 16 39 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.10 -0.22 7.90 -2.39 -0.02 -0.24 16 41 H 0.06 -0.40 7.84 -2.38 -0.02 -0.42 16 42 H 0.06 -0.38 8.14 -2.38 -0.02 -0.40 16 43 H 0.40 -3.08 9.12 -74.06 -0.68 -3.76 16 44 H 0.11 -1.21 8.08 -2.38 -0.02 -1.22 16 45 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 46 H 0.16 -1.80 6.41 -2.91 -0.02 -1.82 16 47 H 0.16 -1.72 8.06 -2.91 -0.02 -1.75 16 48 H 0.15 -0.91 8.06 -2.91 -0.02 -0.93 16 49 H 0.13 0.66 7.00 -2.91 -0.02 0.64 16 50 H 0.13 1.15 8.06 -2.91 -0.02 1.12 16 Total: 0.00 -25.19 408.45 -2.27 -27.46 By element: Atomic # 1 Polarization: -12.72 SS G_CDS: -0.91 Total: -13.63 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 3.73 Total: 4.12 kcal Atomic # 7 Polarization: 1.29 SS G_CDS: -2.35 Total: -1.06 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -4.79 Total: -18.81 kcal Atomic # 14 Polarization: -0.12 SS G_CDS: 2.05 Total: 1.93 kcal Total: -25.19 -2.27 -27.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_4557126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.161 kcal (2) G-P(sol) polarization free energy of solvation -25.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds