Wall clock time and date at job start Sat Mar 6 2021 19:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86301 * 109.46979 * 2 1 4 4 C 1.50700 * 109.46985 * 240.00295 * 2 1 3 5 5 C 1.32769 * 124.70933 * 299.99404 * 4 2 1 6 6 C 1.44426 * 113.08173 * 180.02562 * 5 4 2 7 7 C 1.47195 * 123.46071 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00003 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99729 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99653 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84935 * 334.66222 * 10 9 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 10 9 7 13 13 C 1.54049 * 86.98426 * 140.01639 * 12 10 9 14 14 H 1.09003 * 113.61268 * 89.11946 * 13 12 10 15 15 C 1.53001 * 113.69672 * 220.01213 * 13 12 10 16 16 O 1.42906 * 109.47074 * 272.53604 * 15 13 12 17 17 C 1.53781 * 113.61305 * 203.46742 * 10 9 7 18 18 C 1.36013 * 113.07964 * 0.27373 * 6 5 4 19 19 S 1.70451 * 110.81439 * 359.58901 * 18 6 5 20 20 H 0.96695 * 113.99761 * 60.00258 * 1 2 3 21 21 H 1.09001 * 109.46764 * 120.00029 * 2 1 3 22 22 H 1.48504 * 109.99795 * 60.00054 * 3 2 1 23 23 H 1.48498 * 109.99821 * 181.31467 * 3 2 1 24 24 H 1.07997 * 123.46113 * 359.97438 * 5 4 2 25 25 H 0.96995 * 120.00200 * 359.97438 * 9 7 6 26 26 H 1.08992 * 113.61675 * 254.61383 * 12 10 9 27 27 H 1.09000 * 113.60973 * 25.51671 * 12 10 9 28 28 H 1.09002 * 109.47117 * 32.53319 * 15 13 12 29 29 H 1.08998 * 109.47421 * 152.53611 * 15 13 12 30 30 H 0.96697 * 113.99972 * 179.97438 * 16 15 13 31 31 H 1.08999 * 113.61567 * 334.48111 * 17 10 9 32 32 H 1.08998 * 113.61196 * 105.38466 * 17 10 9 33 33 H 1.07991 * 124.59314 * 179.71318 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6689 -1.9763 -1.5327 6 6 2.2781 -2.4007 -2.7715 7 6 2.1354 -3.7580 -3.3229 8 8 1.4760 -4.5895 -2.7287 9 7 2.7354 -4.0792 -4.4862 10 6 2.5929 -5.4300 -5.0352 11 1 2.3847 -6.1780 -4.2702 12 6 1.6469 -5.5065 -6.2453 13 6 2.6512 -6.4968 -6.8648 14 1 2.4590 -7.5366 -6.6000 15 6 2.8662 -6.2961 -8.3663 16 8 1.8894 -7.0457 -9.0917 17 6 3.7277 -5.8282 -5.9936 18 6 3.0016 -1.4189 -3.3737 19 16 2.9452 0.0206 -2.4626 20 1 -0.3933 0.4417 -0.7650 21 1 1.7923 -0.5138 0.8900 22 1 1.5614 2.4679 1.2085 23 1 3.5346 1.7703 -0.0320 24 1 1.0629 -2.6226 -0.9152 25 1 3.2610 -3.4160 -4.9602 26 1 0.6787 -5.9509 -6.0152 27 1 1.5636 -4.5685 -6.7942 28 1 2.7664 -5.2382 -8.6094 29 1 3.8640 -6.6391 -8.6396 30 1 1.9655 -6.9649 -10.0523 31 1 4.2122 -4.9781 -6.4739 32 1 4.4382 -6.5323 -5.5603 33 1 3.5375 -1.5350 -4.3040 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_6894386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:32:26 Heat of formation + Delta-G solvation = -63.754527 kcal Electronic energy + Delta-G solvation = -17923.150504 eV Core-core repulsion = 14849.738762 eV Total energy + Delta-G solvation = -3073.411742 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39748 -39.90492 -38.72865 -37.28196 -37.06263 -34.67662 -31.75419 -28.86175 -26.97685 -26.74383 -25.88090 -23.19893 -21.94527 -21.05016 -20.23513 -18.95046 -18.24846 -18.13415 -17.67403 -17.14235 -16.40990 -16.33046 -16.07274 -15.77004 -15.28034 -15.24312 -14.62863 -14.36373 -14.13101 -13.73853 -13.67506 -13.47727 -13.30876 -12.74777 -12.63909 -12.33074 -12.28215 -11.92163 -11.74769 -11.48521 -11.04992 -10.79727 -10.61112 -10.19380 -9.98221 -9.44379 -5.12620 -0.34983 0.38317 0.68553 0.80441 1.22641 1.60036 1.90768 2.08563 2.22464 3.23263 3.38063 3.43244 3.64568 3.66782 3.77743 3.88962 3.96488 4.03652 4.26348 4.40233 4.42791 4.45565 4.63404 4.68426 4.70282 4.76586 4.79459 4.97784 5.00412 5.04643 5.15784 5.24457 5.52534 6.45235 6.67951 6.90859 7.12836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.040 4.040 3 Si 0.742 3.258 4 C -0.249 4.249 5 C -0.078 4.078 6 C -0.185 4.185 7 C 0.574 3.426 8 O -0.588 6.588 9 N -0.698 5.698 10 C 0.115 3.885 11 H 0.090 0.910 12 C -0.143 4.143 13 C -0.111 4.111 14 H 0.086 0.914 15 C 0.085 3.915 16 O -0.601 6.601 17 C -0.118 4.118 18 C -0.188 4.188 19 S 0.256 5.744 20 H 0.397 0.603 21 H 0.113 0.887 22 H -0.274 1.274 23 H -0.252 1.252 24 H 0.129 0.871 25 H 0.416 0.584 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.397 0.603 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 6.467 -7.153 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.152 4.152 3 Si 0.644 3.356 4 C -0.366 4.366 5 C -0.107 4.107 6 C -0.203 4.203 7 C 0.361 3.639 8 O -0.470 6.470 9 N -0.349 5.349 10 C 0.010 3.990 11 H 0.109 0.891 12 C -0.182 4.182 13 C -0.130 4.130 14 H 0.104 0.896 15 C 0.008 3.992 16 O -0.409 6.409 17 C -0.156 4.156 18 C -0.326 4.326 19 S 0.522 5.478 20 H 0.247 0.753 21 H 0.130 0.870 22 H -0.200 1.200 23 H -0.177 1.177 24 H 0.147 0.853 25 H 0.255 0.745 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.246 0.754 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.954 7.443 -5.369 10.940 hybrid contribution -0.550 -2.151 -0.106 2.223 sum 5.405 5.292 -5.475 9.338 Atomic orbital electron populations 1.86502 1.17051 1.82241 1.50353 1.24741 0.85170 1.10498 0.94752 0.94144 0.79469 0.74192 0.87840 1.24909 1.08778 0.98769 1.04131 1.20969 0.99220 0.95068 0.95458 1.20094 1.06702 0.94791 0.98687 1.18019 0.78326 0.86858 0.80713 1.90790 1.42633 1.52061 1.61481 1.45681 1.52492 1.14183 1.22590 1.22509 0.98316 0.84046 0.94132 0.89148 1.23577 0.97871 1.00211 0.96533 1.22364 0.97259 0.99445 0.93961 0.89602 1.22235 0.91375 0.95302 0.90291 1.86458 1.57106 1.73013 1.24362 1.23286 0.95694 1.01646 0.94931 1.26191 1.02381 0.98191 1.05865 1.82892 1.44581 1.09773 1.10566 0.75305 0.87011 1.19975 1.17738 0.85342 0.74533 0.92980 0.88377 0.91961 0.92057 0.75355 0.86646 0.89625 0.77626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.81 12.85 -148.98 -1.91 -2.73 16 2 C -0.04 0.01 2.95 71.24 0.21 0.22 16 3 Si 0.74 -2.81 30.91 68.60 2.12 -0.69 16 4 C -0.25 -0.06 5.68 24.51 0.14 0.08 16 5 C -0.08 -0.44 9.91 22.67 0.22 -0.21 16 6 C -0.18 -0.58 5.98 -19.87 -0.12 -0.70 16 7 C 0.57 4.32 7.79 86.60 0.67 5.00 16 8 O -0.59 -10.49 16.41 -4.13 -0.07 -10.56 16 9 N -0.70 0.37 5.33 -443.51 -2.36 -1.99 16 10 C 0.11 0.10 4.21 45.52 0.19 0.29 16 11 H 0.09 0.61 7.50 -2.39 -0.02 0.59 16 12 C -0.14 -0.11 7.45 31.21 0.23 0.12 16 13 C -0.11 0.16 4.01 -10.18 -0.04 0.12 16 14 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 15 C 0.09 -0.31 6.89 71.98 0.50 0.19 16 16 O -0.60 -0.54 13.66 -148.98 -2.04 -2.58 16 17 C -0.12 0.63 7.39 31.12 0.23 0.86 16 18 C -0.19 0.96 10.38 67.30 0.70 1.66 16 19 S 0.26 -1.49 20.18 -56.49 -1.14 -2.63 16 20 H 0.40 -2.79 8.70 -74.06 -0.64 -3.43 16 21 H 0.11 0.16 7.96 -2.39 -0.02 0.14 16 22 H -0.27 -0.86 7.11 99.48 0.71 -0.15 16 23 H -0.25 0.28 7.11 99.48 0.71 0.99 16 24 H 0.13 1.32 8.06 -2.91 -0.02 1.29 16 25 H 0.42 -3.52 7.21 -92.71 -0.67 -4.19 16 26 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.10 -0.19 7.91 -2.39 -0.02 -0.21 16 28 H 0.06 -0.42 7.85 -2.39 -0.02 -0.44 16 29 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.40 -3.10 9.12 -74.06 -0.68 -3.78 16 31 H 0.12 -1.21 8.07 -2.39 -0.02 -1.23 16 32 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.21 -2.71 7.01 -2.92 -0.02 -2.73 16 Total: 0.00 -23.91 298.16 -3.25 -27.17 By element: Atomic # 1 Polarization: -12.83 SS G_CDS: -0.79 Total: -13.62 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 2.94 Total: 7.62 kcal Atomic # 7 Polarization: 0.37 SS G_CDS: -2.36 Total: -1.99 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -4.02 Total: -15.86 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.12 Total: -0.69 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -1.14 Total: -2.63 kcal Total: -23.91 -3.25 -27.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_6894386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.589 kcal (2) G-P(sol) polarization free energy of solvation -23.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds