Wall clock time and date at job start Sat Mar 6 2021 21:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47287 * 2 1 4 4 C 1.53000 * 109.46761 * 240.00257 * 2 1 3 5 5 O 1.45199 * 109.47326 * 120.00441 * 2 1 3 6 6 C 1.34634 * 116.99972 * 59.99350 * 5 2 1 7 7 O 1.21510 * 120.00389 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00224 * 179.97438 * 6 5 2 9 9 C 1.46493 * 120.00325 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47228 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47497 * 54.99778 * 10 9 8 12 12 C 1.53002 * 109.47415 * 175.00130 * 10 9 8 13 13 C 1.53000 * 109.47233 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47060 * 299.99657 * 13 12 10 15 15 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 16 16 N 1.46500 * 109.47473 * 180.02562 * 14 13 12 17 17 C 1.34777 * 120.00270 * 154.99797 * 16 14 13 18 18 O 1.21613 * 119.99836 * 0.02562 * 17 16 14 19 19 C 1.47379 * 120.00191 * 180.02562 * 17 16 14 20 20 C 1.36410 * 127.19001 * 359.68817 * 19 17 16 21 21 O 1.33659 * 108.39770 * 179.83705 * 20 19 17 22 22 C 1.34215 * 110.90283 * 0.44631 * 21 20 19 23 23 C 1.50702 * 125.43525 * 179.72556 * 22 21 20 24 24 O 1.42906 * 109.46720 * 119.99957 * 23 22 21 25 25 Si 1.86299 * 109.47195 * 0.02562 * 23 22 21 26 26 C 1.34180 * 109.12645 * 359.72536 * 22 21 20 27 27 C 1.52999 * 109.47317 * 59.99960 * 14 13 12 28 28 C 1.52997 * 109.47232 * 295.00003 * 10 9 8 29 29 H 1.09002 * 109.47131 * 299.99479 * 1 2 3 30 30 H 1.08997 * 109.47120 * 59.99790 * 1 2 3 31 31 H 1.09007 * 109.47070 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47117 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47337 * 300.00876 * 3 2 1 34 34 H 1.09002 * 109.46609 * 60.00201 * 3 2 1 35 35 H 1.08998 * 109.47396 * 299.99779 * 4 2 1 36 36 H 1.08997 * 109.47342 * 60.00089 * 4 2 1 37 37 H 1.09005 * 109.46755 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99405 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.47277 * 60.00341 * 9 8 6 40 40 H 1.09001 * 109.47111 * 300.00156 * 9 8 6 41 41 H 1.08992 * 109.47063 * 59.99950 * 12 10 9 42 42 H 1.09004 * 109.46733 * 299.99664 * 12 10 9 43 43 H 1.09002 * 109.47398 * 59.99826 * 13 12 10 44 44 H 1.09001 * 109.47194 * 180.02562 * 13 12 10 45 45 H 0.97000 * 119.99491 * 335.00093 * 16 14 13 46 46 H 1.08005 * 125.80260 * 359.97438 * 20 19 17 47 47 H 1.08998 * 109.47054 * 239.99586 * 23 22 21 48 48 H 0.96707 * 113.99232 * 180.02562 * 24 23 22 49 49 H 1.48499 * 110.00073 * 59.99793 * 25 23 22 50 50 H 1.48493 * 110.00001 * 181.31757 * 25 23 22 51 51 H 1.08005 * 127.02380 * 179.97438 * 26 22 21 52 52 H 1.09000 * 109.47486 * 180.02562 * 27 14 13 53 53 H 1.09002 * 109.46716 * 60.00091 * 27 14 13 54 54 H 1.09002 * 109.47153 * 299.99992 * 28 10 9 55 55 H 1.09001 * 109.47289 * 60.00075 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0681 -2.6659 2.4165 9 6 1.6749 -4.0673 2.5824 10 6 2.2749 -4.6153 3.8787 11 1 1.9796 -3.9793 4.7132 12 6 1.7639 -6.0378 4.1159 13 6 2.3635 -6.5856 5.4126 14 6 3.8893 -6.6038 5.3011 15 1 4.1851 -7.2400 4.4668 16 7 4.4635 -7.1289 6.5424 17 6 5.6810 -7.7068 6.5301 18 8 6.3031 -7.7920 5.4887 19 6 6.2584 -8.2355 7.7788 20 6 5.6962 -8.2131 9.0215 21 8 6.5411 -8.7963 9.8773 22 6 7.6562 -9.2003 9.2490 23 6 8.8258 -9.8905 9.9022 24 8 9.0165 -11.1740 9.3035 25 14 8.4866 -10.0990 11.7221 26 6 7.5633 -8.8916 7.9465 27 6 4.4004 -5.1814 5.0639 28 6 3.8007 -4.6336 3.7667 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 2.6278 -2.2370 3.0826 39 1 2.0413 -4.6500 1.7373 40 1 0.5880 -4.1367 2.6278 41 1 2.0593 -6.6738 3.2815 42 1 0.6769 -6.0247 4.1958 43 1 2.0677 -5.9495 6.2468 44 1 1.9998 -7.5992 5.5813 45 1 3.9673 -7.0606 7.3731 46 1 4.7313 -7.7970 9.2710 47 1 9.7247 -9.2891 9.7663 48 1 9.7543 -11.6760 9.6760 49 1 7.2635 -10.9176 11.9203 50 1 9.6459 -10.7498 12.3836 51 1 8.2974 -9.0852 7.1783 52 1 5.4874 -5.1944 4.9840 53 1 4.1046 -4.5453 5.8981 54 1 4.0961 -5.2696 2.9322 55 1 4.1648 -3.6202 3.5978 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12429296_13456056.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:17:09 Heat of formation + Delta-G solvation = -145.509344 kcal Electronic energy + Delta-G solvation = -34842.841137 eV Core-core repulsion = 30040.715984 eV Total energy + Delta-G solvation = -4802.125152 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.208 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.71543 -41.84137 -41.02215 -39.58327 -38.28198 -38.09485 -36.39300 -35.28291 -34.60521 -33.90293 -32.19977 -31.76974 -30.88904 -28.38529 -28.31634 -27.15221 -26.44165 -24.78746 -23.94463 -23.14524 -22.23607 -22.09116 -21.34194 -21.04110 -20.45043 -19.21657 -18.99653 -18.74999 -17.67099 -17.41013 -17.33135 -17.27957 -17.15690 -16.31058 -16.29623 -15.97007 -15.80740 -15.75520 -15.65164 -15.30283 -15.10516 -14.88015 -14.80245 -14.45265 -14.21446 -14.06221 -13.94453 -13.72952 -13.65409 -13.35844 -13.30236 -13.15817 -13.06186 -12.92795 -12.88031 -12.82016 -12.51919 -12.34394 -12.14819 -12.11694 -12.07454 -11.82567 -11.45409 -11.40919 -11.29586 -11.12823 -11.09645 -10.96448 -10.67220 -10.23206 -10.12219 -9.75451 -4.92358 0.26532 0.79181 1.17275 1.18610 1.45961 1.73924 1.74822 1.96652 2.05237 2.25785 3.15536 3.34289 3.49835 3.54515 3.63095 3.67418 3.72895 3.74301 3.78046 3.93014 3.95902 3.99104 4.21437 4.27388 4.32804 4.38948 4.42859 4.45705 4.50003 4.51816 4.53662 4.59491 4.63738 4.66132 4.74783 4.75050 4.82346 4.86166 4.88421 4.90139 4.94362 5.04785 5.10037 5.11652 5.13143 5.19283 5.21899 5.23831 5.25371 5.33185 5.36705 5.42103 5.53604 5.58570 5.84849 6.38270 6.48943 6.50824 7.17443 7.32962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.699 5.699 9 C 0.142 3.858 10 C -0.086 4.086 11 H 0.102 0.898 12 C -0.108 4.108 13 C -0.115 4.115 14 C 0.144 3.856 15 H 0.059 0.941 16 N -0.706 5.706 17 C 0.587 3.413 18 O -0.587 6.587 19 C -0.271 4.271 20 C 0.067 3.933 21 O -0.166 6.166 22 C -0.016 4.016 23 C -0.052 4.052 24 O -0.559 6.559 25 Si 0.789 3.211 26 C -0.153 4.153 27 C -0.122 4.122 28 C -0.111 4.111 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.416 0.584 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.417 0.583 46 H 0.268 0.732 47 H 0.121 0.879 48 H 0.406 0.594 49 H -0.304 1.304 50 H -0.268 1.268 51 H 0.142 0.858 52 H 0.041 0.959 53 H 0.087 0.913 54 H 0.052 0.948 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 4.633 8.432 9.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.394 3.606 7 O -0.487 6.487 8 N -0.359 5.359 9 C 0.020 3.980 10 C -0.105 4.105 11 H 0.120 0.880 12 C -0.147 4.147 13 C -0.153 4.153 14 C 0.040 3.960 15 H 0.077 0.923 16 N -0.357 5.357 17 C 0.376 3.624 18 O -0.469 6.469 19 C -0.275 4.275 20 C -0.003 4.003 21 O -0.062 6.062 22 C -0.064 4.064 23 C -0.159 4.159 24 O -0.371 6.371 25 Si 0.691 3.309 26 C -0.173 4.173 27 C -0.160 4.160 28 C -0.149 4.149 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.253 0.747 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.254 0.746 46 H 0.283 0.717 47 H 0.138 0.862 48 H 0.258 0.742 49 H -0.232 1.232 50 H -0.194 1.194 51 H 0.160 0.840 52 H 0.060 0.940 53 H 0.105 0.895 54 H 0.071 0.929 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.200 3.956 7.847 9.059 hybrid contribution 0.965 -1.063 -0.807 1.647 sum -1.235 2.894 7.040 7.711 Atomic orbital electron populations 1.22473 0.93961 1.03692 1.03571 1.22343 0.94522 0.92568 0.81464 1.21891 1.02415 0.90864 1.04302 1.22480 1.01574 1.02245 0.97503 1.86305 1.71567 1.23349 1.47234 1.18383 0.78828 0.80791 0.82579 1.90907 1.42418 1.71042 1.44370 1.44755 1.55203 1.12832 1.23120 1.21458 1.00032 0.78081 0.98462 1.21382 0.94646 0.97950 0.96479 0.87965 1.21448 1.01475 0.94244 0.97486 1.21742 0.91160 1.03018 0.99351 1.21059 0.94354 0.94482 0.86145 0.92258 1.45742 1.17523 1.59586 1.12853 1.17494 0.81368 0.76648 0.86920 1.90786 1.62079 1.59627 1.34365 1.21512 0.98615 1.12467 0.94937 1.25365 0.95416 0.94001 0.85507 1.83692 1.24377 1.59114 1.39009 1.21336 0.89242 1.04296 0.91487 1.24201 0.95181 0.86360 1.10202 1.86522 1.57693 1.29351 1.63488 0.93554 0.77126 0.88562 0.71639 1.22534 0.97423 1.01248 0.96114 1.21846 0.99501 0.95822 0.98869 1.21560 0.94803 1.01445 0.97108 0.91778 0.89492 0.91821 0.91266 0.88329 0.91038 0.91881 0.89448 0.92068 0.74674 0.92381 0.91051 0.92086 0.89370 0.88597 0.90401 0.74559 0.71673 0.86168 0.74206 1.23164 1.19390 0.83969 0.94037 0.89491 0.92916 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.64 8.37 71.98 0.60 -0.04 16 2 C 0.13 0.45 1.13 -10.79 -0.01 0.44 16 3 C -0.14 0.23 8.85 71.98 0.64 0.87 16 4 C -0.18 -0.77 8.37 71.98 0.60 -0.17 16 5 O -0.37 -2.21 9.94 -55.43 -0.55 -2.77 16 6 C 0.64 4.62 8.06 129.79 1.05 5.66 16 7 O -0.60 -7.68 11.88 19.81 0.24 -7.44 16 8 N -0.70 -0.17 5.29 -590.86 -3.12 -3.29 16 9 C 0.14 -0.26 5.06 86.38 0.44 0.18 16 10 C -0.09 0.59 2.22 -10.79 -0.02 0.56 16 11 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 12 C -0.11 0.78 5.20 30.60 0.16 0.94 16 13 C -0.11 0.96 5.39 30.59 0.16 1.13 16 14 C 0.14 -0.31 2.45 44.99 0.11 -0.20 16 15 H 0.06 0.28 7.58 -2.39 -0.02 0.27 16 16 N -0.71 1.96 5.07 -445.85 -2.26 -0.30 16 17 C 0.59 3.84 7.78 86.65 0.67 4.51 16 18 O -0.59 -10.01 16.65 -4.07 -0.07 -10.08 16 19 C -0.27 -1.02 6.31 -19.00 -0.12 -1.14 16 20 C 0.07 -0.31 11.61 67.39 0.78 0.47 16 21 O -0.17 0.06 8.89 4.41 0.04 0.10 16 22 C -0.02 -0.05 6.24 24.76 0.15 0.10 16 23 C -0.05 0.06 2.97 71.24 0.21 0.27 16 24 O -0.56 -1.08 12.84 -148.98 -1.91 -2.99 16 25 Si 0.79 -2.68 32.08 68.60 2.20 -0.48 16 26 C -0.15 -1.13 10.88 23.65 0.26 -0.87 16 27 C -0.12 0.30 5.50 30.61 0.17 0.46 16 28 C -0.11 0.40 5.08 30.61 0.16 0.56 16 29 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.57 5.88 -2.38 -0.01 0.55 16 32 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.07 -0.16 8.14 -2.39 -0.02 -0.17 16 35 H 0.06 0.61 5.88 -2.39 -0.01 0.60 16 36 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 38 H 0.42 -1.77 7.76 -92.71 -0.72 -2.49 16 39 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.10 -1.20 8.14 -2.39 -0.02 -1.22 16 44 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H 0.42 -4.68 7.57 -92.71 -0.70 -5.38 16 46 H 0.27 -4.52 7.47 -2.91 -0.02 -4.54 16 47 H 0.12 -0.75 7.96 -2.39 -0.02 -0.77 16 48 H 0.41 -3.00 8.74 -74.05 -0.65 -3.65 16 49 H -0.30 -1.63 7.11 99.48 0.71 -0.93 16 50 H -0.27 0.27 7.11 99.48 0.71 0.97 16 51 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 52 H 0.04 0.17 8.14 -2.39 -0.02 0.15 16 53 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 54 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 55 H 0.07 -0.31 7.18 -2.39 -0.02 -0.33 16 Total: 0.00 -32.15 440.83 -0.55 -32.70 By element: Atomic # 1 Polarization: -18.08 SS G_CDS: -1.11 Total: -19.19 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 6.01 Total: 13.75 kcal Atomic # 7 Polarization: 1.79 SS G_CDS: -5.38 Total: -3.60 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -2.26 Total: -23.18 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.20 Total: -0.48 kcal Total: -32.15 -0.55 -32.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12429296_13456056.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.812 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds