Wall clock time and date at job start Sat Mar 6 2021 17:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47392 * 2 1 4 4 C 1.53000 * 109.46828 * 239.99768 * 2 1 3 5 5 O 1.45194 * 109.47118 * 120.00207 * 2 1 3 6 6 C 1.34637 * 117.00594 * 60.00008 * 5 2 1 7 7 O 1.21515 * 119.99408 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00766 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00418 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.46836 * 324.99508 * 9 8 6 11 11 C 1.52994 * 109.47256 * 84.99514 * 9 8 6 12 12 C 1.53003 * 109.47227 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47149 * 300.00155 * 12 11 9 14 14 H 1.08994 * 109.47565 * 299.99878 * 13 12 11 15 15 N 1.46497 * 109.47058 * 179.97438 * 13 12 11 16 16 C 1.34778 * 119.99931 * 84.99674 * 15 13 12 17 17 O 1.21515 * 120.00107 * 0.02562 * 16 15 13 18 18 C 1.48173 * 119.99970 * 180.02562 * 16 15 13 19 19 N 1.32711 * 119.72472 * 0.02562 * 18 16 15 20 20 C 1.31519 * 121.64495 * 180.02562 * 19 18 16 21 21 C 1.38565 * 120.90199 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.32400 * 179.70652 * 21 20 19 23 23 O 1.42897 * 109.47301 * 119.99525 * 22 21 20 24 24 Si 1.86300 * 109.47190 * 359.97438 * 22 21 20 25 25 C 1.38625 * 119.35258 * 359.97438 * 21 20 19 26 26 C 1.38594 * 118.48515 * 0.02562 * 25 21 20 27 27 C 1.53005 * 109.47129 * 60.00179 * 13 12 11 28 28 C 1.52998 * 109.46672 * 299.99793 * 27 13 12 29 29 H 1.09007 * 109.46843 * 299.99848 * 1 2 3 30 30 H 1.09001 * 109.47074 * 59.99794 * 1 2 3 31 31 H 1.08997 * 109.47515 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47584 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47179 * 300.00141 * 3 2 1 34 34 H 1.08998 * 109.47568 * 60.00065 * 3 2 1 35 35 H 1.08997 * 109.47217 * 300.00360 * 4 2 1 36 36 H 1.09001 * 109.46935 * 60.00353 * 4 2 1 37 37 H 1.08996 * 109.47336 * 179.97438 * 4 2 1 38 38 H 0.96998 * 119.99772 * 359.97438 * 8 6 5 39 39 H 1.09005 * 109.47657 * 300.00411 * 11 9 8 40 40 H 1.09006 * 109.47203 * 60.00218 * 11 9 8 41 41 H 1.08997 * 109.46824 * 179.97438 * 12 11 9 42 42 H 1.08999 * 109.46402 * 60.00240 * 12 11 9 43 43 H 0.97000 * 120.00396 * 265.00548 * 15 13 12 44 44 H 1.07999 * 119.55246 * 180.02562 * 20 19 18 45 45 H 1.08995 * 109.47447 * 239.99905 * 22 21 20 46 46 H 0.96702 * 114.00716 * 300.00271 * 23 22 21 47 47 H 1.48502 * 110.00129 * 180.02562 * 24 22 21 48 48 H 1.48501 * 109.99916 * 301.31969 * 24 22 21 49 49 H 1.07998 * 120.75621 * 179.97438 * 25 21 20 50 50 H 1.08001 * 120.46332 * 179.97438 * 26 25 21 51 51 H 1.08994 * 109.47143 * 59.99441 * 27 13 12 52 52 H 1.08993 * 109.46995 * 179.97438 * 27 13 12 53 53 H 1.09004 * 109.47171 * 180.02562 * 28 27 13 54 54 H 1.09001 * 109.47394 * 299.99879 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6655 2.4171 9 6 1.6731 -4.0666 2.5836 10 1 0.6640 -4.2087 2.1967 11 6 2.6449 -4.9645 1.8154 12 6 2.2337 -6.4279 1.9898 13 6 2.2672 -6.7935 3.4751 14 1 3.2763 -6.6511 3.8617 15 7 1.8729 -8.1944 3.6421 16 6 2.7908 -9.1728 3.5132 17 8 3.9456 -8.8928 3.2588 18 6 2.3919 -10.5899 3.6816 19 7 1.1292 -10.8895 3.9588 20 6 0.7339 -12.1339 4.1164 21 6 1.6287 -13.1852 3.9983 22 6 1.1630 -14.6059 4.1880 23 8 1.4037 -15.3498 2.9920 24 14 -0.6604 -14.6158 4.5698 25 6 2.9578 -12.9171 3.7094 26 6 3.3458 -11.5964 3.5486 27 6 1.2953 -5.8956 4.2433 28 6 1.7065 -4.4323 4.0689 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6765 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7210 -1.2495 38 1 2.6268 -2.2366 3.0833 39 1 2.6215 -4.7038 0.7572 40 1 3.6541 -4.8225 2.2023 41 1 2.9258 -7.0675 1.4421 42 1 1.2246 -6.5702 1.6032 43 1 0.9512 -8.4180 3.8454 44 1 -0.3024 -12.3393 4.3410 45 1 1.7093 -15.0601 5.0146 46 1 0.9477 -15.0016 2.2135 47 1 -1.1320 -16.0111 4.7597 48 1 -0.9274 -13.8189 5.7941 49 1 3.6746 -13.7191 3.6127 50 1 4.3732 -11.3511 3.3233 51 1 0.2862 -6.0379 3.8567 52 1 1.3188 -6.1563 5.3013 53 1 1.0144 -3.7926 4.6165 54 1 2.7157 -4.2898 4.4555 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12463208_13287726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:23:40 Heat of formation + Delta-G solvation = -118.953426 kcal Electronic energy + Delta-G solvation = -34579.873400 eV Core-core repulsion = 29903.929939 eV Total energy + Delta-G solvation = -4675.943461 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.203 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.99752 -41.83277 -40.72945 -39.56743 -38.03957 -37.83004 -36.13524 -35.15787 -34.19932 -33.45861 -32.95347 -31.89048 -29.71796 -28.37708 -28.31005 -27.61275 -25.04354 -24.64271 -23.98933 -23.55714 -22.47619 -21.67958 -21.47589 -20.85831 -19.42663 -18.95049 -18.59388 -17.87646 -17.77185 -17.18189 -17.03063 -16.75255 -16.62213 -16.42107 -16.19354 -16.00196 -15.71792 -15.49025 -15.27805 -15.15042 -14.97591 -14.53457 -14.46108 -14.35667 -14.30946 -14.09216 -13.71590 -13.53317 -13.35841 -13.30348 -13.15662 -12.92932 -12.87534 -12.81281 -12.64512 -12.54738 -12.38011 -12.28720 -12.18486 -12.16097 -11.56764 -11.54747 -11.44879 -11.38745 -11.10464 -11.07265 -10.68332 -10.59900 -10.34278 -10.20320 -10.06102 -4.99880 -0.60375 0.07229 1.15362 1.25050 1.53408 1.63910 1.75735 1.94063 1.97915 2.66231 2.93175 3.13239 3.42377 3.50950 3.57979 3.59673 3.67341 3.73685 3.78483 3.78883 3.93215 3.93676 3.95041 4.06700 4.11292 4.13056 4.29807 4.33220 4.41026 4.41760 4.51971 4.57190 4.60183 4.60737 4.69203 4.73589 4.75496 4.83534 4.85651 4.86715 4.94697 4.98378 5.03762 5.07862 5.09017 5.09686 5.19818 5.24498 5.26180 5.30019 5.36812 5.40862 5.44646 5.59790 6.27814 6.40547 6.61135 6.71108 7.04851 7.34879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.592 6.592 8 N -0.697 5.697 9 C 0.165 3.835 10 H 0.082 0.918 11 C -0.121 4.121 12 C -0.118 4.118 13 C 0.143 3.857 14 H 0.080 0.920 15 N -0.695 5.695 16 C 0.569 3.431 17 O -0.566 6.566 18 C 0.063 3.937 19 N -0.458 5.458 20 C 0.101 3.899 21 C -0.142 4.142 22 C -0.070 4.070 23 O -0.551 6.551 24 Si 0.774 3.226 25 C -0.054 4.054 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.417 0.583 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.420 0.580 44 H 0.187 0.813 45 H 0.119 0.881 46 H 0.397 0.603 47 H -0.296 1.296 48 H -0.277 1.277 49 H 0.159 0.841 50 H 0.148 0.852 51 H 0.085 0.915 52 H 0.091 0.909 53 H 0.093 0.907 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 0.982 1.921 4.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.483 6.483 8 N -0.356 5.356 9 C 0.062 3.938 10 H 0.100 0.900 11 C -0.161 4.161 12 C -0.158 4.158 13 C 0.039 3.961 14 H 0.098 0.902 15 N -0.345 5.345 16 C 0.355 3.645 17 O -0.444 6.444 18 C -0.074 4.074 19 N -0.169 5.169 20 C -0.059 4.059 21 C -0.145 4.145 22 C -0.180 4.180 23 O -0.359 6.359 24 Si 0.679 3.321 25 C -0.080 4.080 26 C -0.137 4.137 27 C -0.153 4.153 28 C -0.153 4.153 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.253 0.747 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.258 0.742 44 H 0.204 0.796 45 H 0.137 0.863 46 H 0.248 0.752 47 H -0.224 1.224 48 H -0.203 1.203 49 H 0.177 0.823 50 H 0.165 0.835 51 H 0.104 0.896 52 H 0.109 0.891 53 H 0.111 0.889 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.941 1.198 2.330 4.732 hybrid contribution 1.289 -0.804 0.183 1.530 sum -2.652 0.394 2.513 3.675 Atomic orbital electron populations 1.22468 0.93926 1.03740 1.03508 1.22336 0.94538 0.92532 0.81485 1.21889 1.02398 0.90937 1.04262 1.22471 1.01531 1.02276 0.97453 1.86309 1.71560 1.23416 1.47223 1.18371 0.78682 0.80687 0.82581 1.90905 1.42272 1.71036 1.44104 1.44818 1.55250 1.12404 1.23167 1.21046 0.98708 0.77030 0.97052 0.90019 1.21824 0.99861 0.94047 1.00348 1.21775 1.02204 0.95507 0.96286 1.21138 1.00161 0.79412 0.95373 0.90222 1.45853 1.13101 1.05759 1.69830 1.18087 0.84966 0.84935 0.76537 1.90791 1.19983 1.83670 1.49991 1.21108 0.90668 0.94123 1.01532 1.67502 1.16048 1.22991 1.10333 1.23026 1.00618 0.86624 0.95605 1.21772 0.95031 0.97998 0.99685 1.25174 1.13456 0.87744 0.91638 1.86505 1.75554 1.54734 1.19130 0.93756 0.74325 0.78925 0.85111 1.21717 0.96195 0.96304 0.93736 1.22277 1.01478 0.92823 0.97166 1.21708 0.99210 0.92907 1.01473 1.21720 1.04315 0.96283 0.93005 0.91865 0.89537 0.91709 0.91295 0.88352 0.91099 0.91788 0.89500 0.92127 0.74655 0.92977 0.91010 0.93004 0.90897 0.74219 0.79622 0.86348 0.75235 1.22409 1.20309 0.82297 0.83463 0.89634 0.89050 0.88877 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.59 8.37 71.98 0.60 0.02 16 2 C 0.13 0.42 1.13 -10.80 -0.01 0.41 16 3 C -0.14 0.24 8.85 71.98 0.64 0.87 16 4 C -0.18 -0.71 8.37 71.98 0.60 -0.10 16 5 O -0.37 -2.14 9.94 -55.46 -0.55 -2.69 16 6 C 0.64 4.36 8.02 129.79 1.04 5.40 16 7 O -0.59 -7.09 11.54 19.79 0.23 -6.86 16 8 N -0.70 -0.19 5.08 -570.14 -2.90 -3.08 16 9 C 0.16 -0.21 2.46 44.99 0.11 -0.09 16 10 H 0.08 0.16 7.58 -2.38 -0.02 0.14 16 11 C -0.12 -0.16 5.49 30.59 0.17 0.01 16 12 C -0.12 -0.16 5.49 30.59 0.17 0.01 16 13 C 0.14 -0.12 2.45 44.99 0.11 -0.01 16 14 H 0.08 0.19 7.58 -2.39 -0.02 0.17 16 15 N -0.70 -0.45 5.07 -445.10 -2.25 -2.70 16 16 C 0.57 3.60 7.78 86.88 0.68 4.27 16 17 O -0.57 -7.27 15.99 -3.76 -0.06 -7.33 16 18 C 0.06 0.24 6.75 41.91 0.28 0.53 16 19 N -0.46 -0.43 9.54 -184.91 -1.76 -2.19 16 20 C 0.10 -0.30 9.84 84.82 0.83 0.53 16 21 C -0.14 0.47 5.40 -19.69 -0.11 0.37 16 22 C -0.07 0.35 2.83 71.24 0.20 0.55 16 23 O -0.55 2.15 12.78 -148.98 -1.90 0.24 16 24 Si 0.77 -4.94 29.82 68.60 2.05 -2.89 16 25 C -0.05 0.08 9.77 22.45 0.22 0.30 16 26 C -0.12 -0.27 9.63 22.61 0.22 -0.05 16 27 C -0.11 0.73 5.39 30.60 0.16 0.90 16 28 C -0.11 0.77 5.39 30.59 0.16 0.93 16 29 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 32 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 36 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.42 -1.80 8.71 -92.71 -0.81 -2.61 16 39 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 40 H 0.07 0.06 8.14 -2.38 -0.02 0.04 16 41 H 0.05 0.31 8.14 -2.39 -0.02 0.30 16 42 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.42 -1.17 7.93 -92.71 -0.74 -1.90 16 44 H 0.19 -1.58 4.89 -2.91 -0.01 -1.60 16 45 H 0.12 -0.53 7.96 -2.39 -0.02 -0.55 16 46 H 0.40 -4.62 8.70 -74.06 -0.64 -5.27 16 47 H -0.30 -0.52 7.11 99.48 0.71 0.19 16 48 H -0.28 0.62 7.11 99.48 0.71 1.32 16 49 H 0.16 -0.66 8.06 -2.91 -0.02 -0.68 16 50 H 0.15 0.39 7.64 -2.91 -0.02 0.37 16 51 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 52 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 53 H 0.09 -0.78 8.14 -2.38 -0.02 -0.80 16 54 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 Total: 0.00 -22.43 430.34 -2.28 -24.72 By element: Atomic # 1 Polarization: -10.82 SS G_CDS: -1.21 Total: -12.03 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.08 Total: 14.82 kcal Atomic # 7 Polarization: -1.06 SS G_CDS: -6.92 Total: -7.98 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -2.29 Total: -16.64 kcal Atomic # 14 Polarization: -4.94 SS G_CDS: 2.05 Total: -2.89 kcal Total: -22.43 -2.28 -24.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12463208_13287726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.237 kcal (2) G-P(sol) polarization free energy of solvation -22.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds