Wall clock time and date at job start Sat Mar 6 2021 17:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34661 * 124.85194 * 2 1 4 4 C 1.36770 * 108.39821 * 180.02562 * 3 2 1 5 5 C 1.47257 * 126.94467 * 180.02562 * 4 3 2 6 6 O 1.21623 * 120.00488 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99834 * 0.02562 * 5 4 3 8 8 C 1.46499 * 120.00018 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.47332 * 35.00279 * 8 7 5 10 10 C 1.53005 * 109.47087 * 155.00469 * 8 7 5 11 11 C 1.53000 * 109.46950 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47072 * 299.99353 * 11 10 8 13 13 H 1.08997 * 109.47451 * 300.00983 * 12 11 10 14 14 N 1.46494 * 109.46982 * 180.02562 * 12 11 10 15 15 C 1.34784 * 119.99635 * 155.00372 * 14 12 11 16 16 O 1.21507 * 119.99849 * 0.02562 * 15 14 12 17 17 O 1.34633 * 119.99596 * 179.97438 * 15 14 12 18 18 C 1.45208 * 116.99886 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.46830 * 60.00120 * 18 17 15 20 20 C 1.52996 * 109.47057 * 180.02562 * 18 17 15 21 21 C 1.53004 * 109.46885 * 300.00161 * 18 17 15 22 22 C 1.53005 * 109.46705 * 60.00497 * 12 11 10 23 23 C 1.52995 * 109.47205 * 275.00180 * 8 7 5 24 24 C 1.46692 * 106.11590 * 0.25621 * 4 3 2 25 25 C 1.34491 * 106.32787 * 359.57147 * 24 4 3 26 26 C 1.50710 * 125.56810 * 180.14374 * 25 24 4 27 27 O 1.42901 * 109.46712 * 150.33874 * 26 25 24 28 28 Si 1.86296 * 109.46946 * 30.33906 * 26 25 24 29 29 H 1.08998 * 109.47152 * 89.97760 * 1 2 3 30 30 H 1.09004 * 109.47274 * 209.98034 * 1 2 3 31 31 H 1.09003 * 109.47304 * 329.97640 * 1 2 3 32 32 H 1.07998 * 125.79999 * 359.97438 * 3 2 1 33 33 H 0.96996 * 120.00112 * 0.02562 * 7 5 4 34 34 H 1.08990 * 109.47083 * 60.00099 * 10 8 7 35 35 H 1.09006 * 109.46819 * 299.99747 * 10 8 7 36 36 H 1.09002 * 109.46694 * 180.02562 * 11 10 8 37 37 H 1.08996 * 109.47332 * 59.99510 * 11 10 8 38 38 H 0.96995 * 120.00292 * 335.27805 * 14 12 11 39 39 H 1.08998 * 109.47144 * 60.00117 * 19 18 17 40 40 H 1.08999 * 109.46619 * 180.02562 * 19 18 17 41 41 H 1.08996 * 109.46980 * 300.00184 * 19 18 17 42 42 H 1.08994 * 109.47596 * 60.00070 * 20 18 17 43 43 H 1.09009 * 109.46889 * 180.02562 * 20 18 17 44 44 H 1.09003 * 109.46990 * 299.99131 * 20 18 17 45 45 H 1.09005 * 109.46836 * 60.00118 * 21 18 17 46 46 H 1.08999 * 109.46845 * 179.97438 * 21 18 17 47 47 H 1.08994 * 109.47403 * 299.99706 * 21 18 17 48 48 H 1.08996 * 109.47503 * 59.99963 * 22 12 11 49 49 H 1.08997 * 109.47041 * 180.02562 * 22 12 11 50 50 H 1.08995 * 109.47831 * 299.99970 * 23 8 7 51 51 H 1.09001 * 109.47451 * 60.00432 * 23 8 7 52 52 H 1.07994 * 126.83638 * 179.74067 * 24 4 3 53 53 H 1.08995 * 109.46912 * 270.34007 * 26 25 24 54 54 H 0.96706 * 114.00053 * 299.99892 * 27 26 25 55 55 H 1.48496 * 110.00189 * 58.67939 * 28 26 25 56 56 H 1.48497 * 109.99986 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7177 -0.0006 5 6 4.7283 1.5957 -0.0003 6 8 5.8446 1.1128 -0.0013 7 7 4.5734 2.9346 0.0012 8 6 5.7494 3.8081 0.0010 9 1 6.5425 3.3496 -0.5897 10 6 5.3787 5.1624 -0.6069 11 6 6.6071 6.0744 -0.6077 12 6 7.0934 6.2763 0.8289 13 1 6.3007 6.7349 1.4198 14 7 8.2693 7.1500 0.8281 15 6 8.5736 7.8713 1.9253 16 8 7.8729 7.7963 2.9152 17 8 9.6545 8.6739 1.9248 18 6 9.9211 9.4214 3.1408 19 6 10.1325 8.4478 4.3019 20 6 11.1792 10.2712 2.9515 21 6 8.7320 10.3333 3.4498 22 6 7.4642 4.9220 1.4367 23 6 6.2352 4.0098 1.4376 24 6 3.5375 -0.7492 -0.0073 25 6 2.2447 -1.1197 -0.0004 26 6 1.7397 -2.5397 -0.0006 27 8 0.4810 -2.5976 0.6735 28 14 2.9651 -3.6346 0.8771 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 1.8767 2.1241 -0.0004 33 1 3.6832 3.3197 0.0024 34 1 4.5857 5.6209 -0.0162 35 1 5.0326 5.0187 -1.6305 36 1 6.3428 7.0394 -1.0403 37 1 7.3999 5.6157 -1.1986 38 1 8.8265 7.2126 0.0367 39 1 10.9796 7.7982 4.0817 40 1 10.3322 9.0090 5.2148 41 1 9.2360 7.8427 4.4365 42 1 11.0282 10.9648 2.1244 43 1 11.3795 10.8321 3.8646 44 1 12.0265 9.6218 2.7312 45 1 7.8354 9.7281 3.5845 46 1 8.9319 10.8941 4.3629 47 1 8.5813 11.0269 2.6227 48 1 8.2569 4.4632 0.8458 49 1 7.8102 5.0656 2.4603 50 1 5.4423 4.4683 2.0284 51 1 6.4994 3.0451 1.8708 52 1 4.3980 -1.4017 -0.0134 53 1 1.6177 -2.8818 -1.0282 54 1 0.5146 -2.3067 1.5952 55 1 3.1644 -3.1594 2.2697 56 1 2.4791 -5.0377 0.8833 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12463208_13287730.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:23:43 Heat of formation + Delta-G solvation = -104.833439 kcal Electronic energy + Delta-G solvation = -35436.014258 eV Core-core repulsion = 30733.371607 eV Total energy + Delta-G solvation = -4702.642651 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.219 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.44924 -41.89690 -40.76753 -39.44375 -38.01114 -37.87385 -36.02005 -35.10953 -33.98600 -33.56829 -31.84938 -31.49759 -29.44563 -28.37993 -28.31037 -27.43178 -26.27712 -24.56146 -23.95456 -23.35114 -22.24204 -21.47869 -21.11017 -20.77047 -20.40826 -19.25200 -18.88602 -17.79787 -17.54716 -17.18177 -17.12363 -16.97823 -16.78345 -16.51312 -15.97897 -15.76067 -15.60308 -15.47077 -15.38385 -15.13318 -15.02603 -14.78554 -14.54252 -14.50489 -14.12766 -14.08163 -13.71474 -13.42202 -13.35726 -13.27177 -13.21564 -13.14430 -13.04054 -12.92663 -12.87413 -12.73570 -12.61499 -12.36439 -12.34322 -12.27295 -12.15632 -11.97777 -11.50647 -11.50147 -11.38866 -11.12528 -10.94045 -10.89469 -10.21419 -10.04807 -9.54135 -9.19457 -4.90153 0.76722 1.03528 1.16127 1.45425 1.62579 1.75981 1.80935 2.06862 2.30788 2.59722 3.13733 3.15749 3.57174 3.61968 3.64883 3.73548 3.78678 3.90179 3.93530 3.95837 4.00095 4.09322 4.16278 4.29414 4.35786 4.39567 4.44311 4.45711 4.47209 4.52029 4.53660 4.59967 4.65297 4.72771 4.74966 4.75316 4.81408 4.83783 4.86580 4.93717 4.98165 5.01490 5.06929 5.10451 5.11549 5.12685 5.24216 5.25936 5.29090 5.32394 5.43963 5.56954 5.60495 5.68451 5.97926 6.24592 6.31774 6.41066 6.69739 7.35155 7.39746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.427 5.427 3 C 0.070 3.930 4 C -0.262 4.262 5 C 0.588 3.412 6 O -0.592 6.592 7 N -0.713 5.713 8 C 0.148 3.852 9 H 0.072 0.928 10 C -0.113 4.113 11 C -0.116 4.116 12 C 0.166 3.834 13 H 0.082 0.918 14 N -0.697 5.697 15 C 0.643 3.357 16 O -0.593 6.593 17 O -0.370 6.370 18 C 0.127 3.873 19 C -0.180 4.180 20 C -0.138 4.138 21 C -0.179 4.179 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.155 4.155 25 C -0.025 4.025 26 C -0.042 4.042 27 O -0.538 6.538 28 Si 0.772 3.228 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.207 0.793 33 H 0.412 0.588 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.416 0.584 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.049 0.951 50 H 0.072 0.928 51 H 0.046 0.954 52 H 0.154 0.846 53 H 0.133 0.867 54 H 0.387 0.613 55 H -0.296 1.296 56 H -0.287 1.287 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 4.105 -3.594 6.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.101 5.101 3 C -0.067 4.067 4 C -0.272 4.272 5 C 0.379 3.621 6 O -0.473 6.473 7 N -0.364 5.364 8 C 0.043 3.957 9 H 0.090 0.910 10 C -0.151 4.151 11 C -0.154 4.154 12 C 0.063 3.937 13 H 0.100 0.900 14 N -0.357 5.357 15 C 0.397 3.603 16 O -0.483 6.483 17 O -0.285 6.285 18 C 0.091 3.909 19 C -0.237 4.237 20 C -0.195 4.195 21 C -0.236 4.236 22 C -0.161 4.161 23 C -0.158 4.158 24 C -0.179 4.179 25 C -0.134 4.134 26 C -0.152 4.152 27 O -0.347 6.347 28 Si 0.676 3.324 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.224 0.776 33 H 0.249 0.751 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.253 0.747 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.091 0.909 51 H 0.065 0.935 52 H 0.171 0.829 53 H 0.151 0.849 54 H 0.238 0.762 55 H -0.223 1.223 56 H -0.214 1.214 Dipole moment (debyes) X Y Z Total from point charges -4.299 3.008 -2.983 6.035 hybrid contribution -0.723 0.423 0.756 1.128 sum -5.021 3.431 -2.227 6.476 Atomic orbital electron populations 1.22729 0.74695 1.06988 1.04948 1.43721 1.08001 1.04634 1.53701 1.22422 0.89094 0.93208 1.01990 1.20364 0.92280 0.93986 1.20588 1.17664 0.87747 0.82244 0.74481 1.90751 1.27643 1.76162 1.52757 1.45729 1.10441 1.04810 1.75448 1.20969 0.88119 0.90807 0.95770 0.91003 1.21702 0.98274 0.92260 1.02871 1.21734 0.98561 1.01485 0.93664 1.21045 0.85741 0.88324 0.98630 0.90002 1.44837 1.31193 1.45091 1.14554 1.18375 0.79796 0.78270 0.83885 1.90900 1.53554 1.69817 1.34077 1.86312 1.44006 1.55285 1.42905 1.22342 0.97025 0.90566 0.80980 1.22471 1.02750 1.00122 0.98394 1.21890 0.94169 0.99139 1.04274 1.22465 0.98406 0.99596 1.03142 1.21835 0.98276 0.95141 1.00896 1.21785 0.97718 0.98846 0.97411 1.21814 0.95543 0.93628 1.06958 1.20805 0.90474 0.89796 1.12336 1.24715 0.92377 0.94078 1.04031 1.86536 1.29607 1.88627 1.29895 0.93320 0.84564 0.74680 0.79865 0.90223 0.87197 0.87754 0.77615 0.75067 0.89480 0.88888 0.88873 0.89864 0.74671 0.92157 0.89496 0.91823 0.91062 0.88350 0.91316 0.91732 0.89549 0.91816 0.91294 0.93264 0.90901 0.93530 0.82874 0.84943 0.76245 1.22273 1.21413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.38 10.71 127.77 1.37 0.99 16 2 N -0.43 1.12 3.09 -533.23 -1.65 -0.53 16 3 C 0.07 -0.22 10.83 83.91 0.91 0.69 16 4 C -0.26 -1.07 6.29 -19.04 -0.12 -1.19 16 5 C 0.59 4.27 7.77 86.61 0.67 4.94 16 6 O -0.59 -9.76 16.63 -4.11 -0.07 -9.83 16 7 N -0.71 0.61 5.07 -445.96 -2.26 -1.65 16 8 C 0.15 -0.10 2.45 44.99 0.11 0.01 16 9 H 0.07 0.29 7.58 -2.39 -0.02 0.27 16 10 C -0.11 0.81 5.39 30.60 0.16 0.98 16 11 C -0.12 0.78 5.39 30.60 0.16 0.94 16 12 C 0.17 -0.15 2.45 45.00 0.11 -0.04 16 13 H 0.08 0.16 7.58 -2.39 -0.02 0.14 16 14 N -0.70 -0.48 5.08 -570.12 -2.90 -3.38 16 15 C 0.64 4.58 8.02 129.79 1.04 5.62 16 16 O -0.59 -7.28 11.54 19.82 0.23 -7.05 16 17 O -0.37 -2.25 9.94 -55.42 -0.55 -2.80 16 18 C 0.13 0.45 1.13 -10.79 -0.01 0.44 16 19 C -0.18 -0.77 8.37 71.98 0.60 -0.17 16 20 C -0.14 0.21 8.85 71.98 0.64 0.85 16 21 C -0.18 -0.60 8.37 71.98 0.60 0.00 16 22 C -0.12 -0.28 5.50 30.61 0.17 -0.11 16 23 C -0.12 -0.26 5.50 30.61 0.17 -0.09 16 24 C -0.16 -0.70 9.50 23.62 0.22 -0.47 16 25 C -0.02 -0.01 6.13 40.99 0.25 0.24 16 26 C -0.04 0.08 2.98 71.24 0.21 0.30 16 27 O -0.54 1.26 9.95 -148.98 -1.48 -0.22 16 28 Si 0.77 -0.42 31.13 68.60 2.14 1.71 16 29 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.11 -0.85 4.94 -2.38 -0.01 -0.87 16 31 H 0.10 -1.30 8.13 -2.39 -0.02 -1.32 16 32 H 0.21 -2.42 7.45 -2.91 -0.02 -2.44 16 33 H 0.41 -3.25 7.55 -92.71 -0.70 -3.95 16 34 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 35 H 0.09 -0.84 8.14 -2.38 -0.02 -0.86 16 36 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 38 H 0.42 -1.61 8.71 -92.71 -0.81 -2.42 16 39 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.06 0.61 5.88 -2.39 -0.01 0.60 16 42 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.10 -0.47 8.14 -2.38 -0.02 -0.49 16 44 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.06 0.55 5.88 -2.38 -0.01 0.54 16 46 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.07 0.16 8.14 -2.39 -0.02 0.15 16 49 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 51 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 52 H 0.15 0.59 6.90 -2.91 -0.02 0.57 16 53 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 54 H 0.39 -2.70 8.38 -74.05 -0.62 -3.32 16 55 H -0.30 -1.76 7.11 99.48 0.71 -1.05 16 56 H -0.29 -1.47 7.11 99.48 0.71 -0.76 16 Total: 0.00 -27.29 439.49 -0.45 -27.73 By element: Atomic # 1 Polarization: -16.72 SS G_CDS: -1.18 Total: -17.90 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 7.28 Total: 13.91 kcal Atomic # 7 Polarization: 1.25 SS G_CDS: -6.80 Total: -5.56 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -1.87 Total: -19.90 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: 2.14 Total: 1.71 kcal Total: -27.29 -0.45 -27.73 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12463208_13287730.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.099 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds