Wall clock time and date at job start Sat Mar 6 2021 17:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47029 * 2 1 4 4 C 1.53003 * 109.47141 * 240.00593 * 2 1 3 5 5 O 1.45192 * 109.47251 * 120.00253 * 2 1 3 6 6 C 1.34634 * 117.00157 * 60.00167 * 5 2 1 7 7 O 1.21512 * 119.99777 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99811 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.47068 * 34.99431 * 9 8 6 11 11 C 1.52999 * 109.46691 * 155.00013 * 9 8 6 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47127 * 299.99539 * 12 11 9 14 14 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 15 15 N 1.46496 * 109.46953 * 179.97438 * 13 12 11 16 16 C 1.34781 * 119.99775 * 154.99854 * 15 13 12 17 17 O 1.21551 * 119.99850 * 0.02562 * 16 15 13 18 18 C 1.47846 * 119.99882 * 179.97438 * 16 15 13 19 19 C 1.39517 * 120.55800 * 359.73003 * 18 16 15 20 20 N 1.31697 * 120.56092 * 179.68088 * 19 18 16 21 21 C 1.31920 * 121.88273 * 0.62590 * 20 19 18 22 22 C 1.38356 * 121.07908 * 359.66039 * 21 20 19 23 23 C 1.50697 * 120.34687 * 180.02562 * 22 21 20 24 24 O 1.42905 * 109.46925 * 244.97246 * 23 22 21 25 25 Si 1.86299 * 109.47677 * 4.97469 * 23 22 21 26 26 C 1.38357 * 119.30069 * 0.02562 * 22 21 20 27 27 C 1.53002 * 109.46817 * 60.00361 * 13 12 11 28 28 C 1.52996 * 109.46972 * 299.99733 * 27 13 12 29 29 H 1.09000 * 109.47131 * 299.99747 * 1 2 3 30 30 H 1.09002 * 109.47140 * 59.99618 * 1 2 3 31 31 H 1.08994 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46643 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47005 * 300.00173 * 3 2 1 34 34 H 1.09007 * 109.46306 * 60.00163 * 3 2 1 35 35 H 1.09004 * 109.46945 * 299.99479 * 4 2 1 36 36 H 1.09002 * 109.47276 * 59.99871 * 4 2 1 37 37 H 1.09004 * 109.46862 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99910 * 359.97438 * 8 6 5 39 39 H 1.08993 * 109.47839 * 59.99891 * 11 9 8 40 40 H 1.09000 * 109.47160 * 299.99453 * 11 9 8 41 41 H 1.09001 * 109.46801 * 59.99811 * 12 11 9 42 42 H 1.09001 * 109.46998 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00575 * 335.00735 * 15 13 12 44 44 H 1.07999 * 119.71626 * 359.97438 * 19 18 16 45 45 H 1.07998 * 119.46474 * 179.68312 * 21 20 19 46 46 H 1.08998 * 109.47414 * 124.98207 * 23 22 21 47 47 H 0.96705 * 113.99448 * 60.00386 * 24 23 22 48 48 H 1.48490 * 110.00271 * 180.02562 * 25 23 22 49 49 H 1.48503 * 109.99877 * 301.32276 * 25 23 22 50 50 H 1.08000 * 120.85432 * 179.97438 * 26 22 21 51 51 H 1.08996 * 109.47407 * 60.00219 * 27 13 12 52 52 H 1.09000 * 109.46986 * 179.97438 * 27 13 12 53 53 H 1.09001 * 109.46993 * 180.02562 * 28 27 13 54 54 H 1.09000 * 109.47380 * 299.99696 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9509 -2.5094 0.5038 8 7 2.0673 -2.6655 2.4170 9 6 1.6741 -4.0670 2.5829 10 1 1.6284 -4.5495 1.6066 11 6 2.7027 -4.7849 3.4590 12 6 2.2917 -6.2485 3.6327 13 6 0.9169 -6.3163 4.3006 14 1 0.9630 -5.8335 5.2767 15 7 0.5232 -7.7176 4.4663 16 6 -0.3498 -8.0624 5.4336 17 8 -0.8107 -7.2106 6.1680 18 6 -0.7476 -9.4765 5.6005 19 6 -0.2308 -10.4627 4.7597 20 7 -0.5803 -11.7233 4.9123 21 6 -1.4319 -12.1021 5.8459 22 6 -1.9931 -11.1842 6.7158 23 6 -2.9637 -11.6352 7.7766 24 8 -4.2504 -11.0707 7.5159 25 14 -3.0855 -13.4941 7.7571 26 6 -1.6537 -9.8477 6.6013 27 6 -0.1116 -5.5984 3.4245 28 6 0.2993 -4.1349 3.2508 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6767 -1.7489 -1.2494 36 1 1.6767 -0.2072 -2.1393 37 1 3.1301 -0.7215 -1.2491 38 1 2.6269 -2.2366 3.0832 39 1 2.7485 -4.3025 4.4352 40 1 3.6823 -4.7362 2.9833 41 1 2.2457 -6.7312 2.6564 42 1 3.0247 -6.7601 4.2564 43 1 0.8908 -8.3974 3.8800 44 1 0.4653 -10.1907 3.9801 45 1 -1.6951 -13.1459 5.9330 46 1 -2.6132 -11.3043 8.7542 47 1 -4.6247 -11.3232 6.6607 48 1 -4.0402 -13.9515 8.7984 49 1 -3.5320 -13.9598 6.4196 50 1 -2.0770 -9.1098 7.2667 51 1 -0.1577 -6.0812 2.4483 52 1 -1.0912 -5.6471 3.9000 53 1 -0.4337 -3.6233 2.6270 54 1 0.3453 -3.6521 4.2269 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12463208_13287814.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:23:57 Heat of formation + Delta-G solvation = -118.794771 kcal Electronic energy + Delta-G solvation = -34689.993508 eV Core-core repulsion = 30014.056927 eV Total energy + Delta-G solvation = -4675.936581 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.203 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.02627 -41.85023 -40.75105 -39.57378 -38.09823 -37.99520 -36.16055 -35.18374 -34.16403 -33.79550 -32.88574 -31.89077 -29.54447 -28.39183 -28.32179 -27.29918 -25.91416 -24.21515 -23.99793 -23.72792 -22.47281 -21.62499 -21.43405 -20.80663 -19.39773 -19.03538 -18.27389 -17.96338 -17.79903 -17.78250 -17.19162 -17.00184 -16.62622 -16.51713 -16.18988 -15.94744 -15.72132 -15.50126 -15.24124 -15.13559 -14.96840 -14.57258 -14.51282 -14.42894 -14.23219 -14.14441 -13.73991 -13.44475 -13.37146 -13.30929 -13.16924 -12.94370 -12.88735 -12.83747 -12.78574 -12.65674 -12.38415 -12.29958 -12.18885 -12.09949 -11.58050 -11.55086 -11.42718 -11.39560 -11.12136 -11.09604 -10.70846 -10.56704 -10.42160 -10.23287 -10.10663 -4.94949 -0.57804 -0.03636 1.14400 1.21661 1.56834 1.65044 1.74348 1.90725 1.98118 2.62193 3.08499 3.13017 3.32113 3.40362 3.58013 3.59520 3.65234 3.70789 3.72222 3.74035 3.77431 3.92286 3.92425 4.05644 4.09910 4.11142 4.25793 4.30510 4.33796 4.40860 4.51096 4.53113 4.58786 4.60507 4.68508 4.72811 4.74071 4.82402 4.82867 4.85364 4.89276 4.95621 5.03119 5.06864 5.08798 5.10148 5.18852 5.24362 5.24723 5.28457 5.31531 5.39317 5.43725 5.58713 6.37028 6.39213 6.39546 6.64910 7.04496 7.33529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.643 3.357 7 O -0.593 6.593 8 N -0.698 5.698 9 C 0.165 3.835 10 H 0.082 0.918 11 C -0.116 4.116 12 C -0.115 4.115 13 C 0.146 3.854 14 H 0.077 0.923 15 N -0.704 5.704 16 C 0.565 3.435 17 O -0.573 6.573 18 C -0.197 4.197 19 C 0.148 3.852 20 N -0.494 5.494 21 C 0.128 3.872 22 C -0.173 4.173 23 C -0.083 4.083 24 O -0.548 6.548 25 Si 0.776 3.224 26 C -0.002 4.002 27 C -0.120 4.120 28 C -0.123 4.123 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.417 0.583 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.416 0.584 44 H 0.193 0.807 45 H 0.182 0.818 46 H 0.129 0.871 47 H 0.387 0.613 48 H -0.298 1.298 49 H -0.271 1.271 50 H 0.136 0.864 51 H 0.075 0.925 52 H 0.048 0.952 53 H 0.049 0.951 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.696 -2.219 -1.071 7.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.484 6.484 8 N -0.357 5.357 9 C 0.061 3.939 10 H 0.101 0.899 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.042 3.958 14 H 0.096 0.904 15 N -0.356 5.356 16 C 0.352 3.648 17 O -0.453 6.453 18 C -0.202 4.202 19 C -0.010 4.010 20 N -0.202 5.202 21 C -0.028 4.028 22 C -0.176 4.176 23 C -0.192 4.192 24 O -0.356 6.356 25 Si 0.679 3.321 26 C -0.029 4.029 27 C -0.159 4.159 28 C -0.162 4.162 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.253 0.747 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.255 0.745 44 H 0.210 0.790 45 H 0.199 0.801 46 H 0.147 0.853 47 H 0.237 0.763 48 H -0.226 1.226 49 H -0.198 1.198 50 H 0.154 0.846 51 H 0.094 0.906 52 H 0.066 0.934 53 H 0.068 0.932 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.999 -2.838 -1.125 6.731 hybrid contribution -1.413 1.394 -0.010 1.985 sum 4.586 -1.444 -1.135 4.940 Atomic orbital electron populations 1.22473 0.94250 1.03636 1.03392 1.22335 0.94296 0.92612 0.81626 1.21895 1.02518 0.90916 1.04171 1.22468 1.01690 1.02247 0.97225 1.86309 1.71576 1.23390 1.47240 1.18384 0.78671 0.80759 0.82527 1.90903 1.42062 1.70872 1.44518 1.44837 1.55098 1.12699 1.23051 1.21064 0.94069 0.78444 1.00273 0.89938 1.21733 0.98425 0.94804 1.00493 1.21730 0.94348 0.96705 1.02521 1.21078 0.94621 0.80488 0.99638 0.90447 1.45834 1.45110 1.10504 1.34160 1.18205 0.78774 0.87546 0.80265 1.90801 1.55816 1.52265 1.46452 1.21023 1.03377 0.94601 1.01247 1.23476 0.94980 0.86926 0.95666 1.67819 1.13310 1.18785 1.20241 1.23258 0.90328 1.00642 0.88572 1.21346 1.01630 0.94116 1.00484 1.25297 0.82053 1.12419 0.99419 1.86621 1.32450 1.73562 1.42951 0.94044 0.88492 0.71480 0.78071 1.21656 0.90992 0.96111 0.94108 1.21789 0.98661 0.94992 1.00474 1.21827 0.96895 0.96494 1.00987 0.92161 0.89506 0.91813 0.91056 0.88355 0.91318 0.91715 0.89555 0.91809 0.74662 0.89793 0.88810 0.89255 0.88565 0.74519 0.78997 0.80140 0.85347 0.76319 1.22605 1.19753 0.84621 0.90645 0.93353 0.93233 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.70 8.37 71.98 0.60 -0.10 16 2 C 0.13 0.40 1.13 -10.79 -0.01 0.39 16 3 C -0.14 0.25 8.85 71.98 0.64 0.89 16 4 C -0.18 -0.55 8.37 71.98 0.60 0.06 16 5 O -0.37 -2.06 9.94 -55.44 -0.55 -2.61 16 6 C 0.64 4.13 8.02 129.79 1.04 5.17 16 7 O -0.59 -6.90 11.54 19.80 0.23 -6.67 16 8 N -0.70 0.18 5.08 -570.12 -2.90 -2.72 16 9 C 0.16 -0.37 2.45 44.99 0.11 -0.26 16 10 H 0.08 0.06 7.58 -2.39 -0.02 0.04 16 11 C -0.12 0.95 5.39 30.60 0.16 1.12 16 12 C -0.11 1.06 5.39 30.60 0.16 1.22 16 13 C 0.15 -0.48 2.45 44.99 0.11 -0.37 16 14 H 0.08 0.06 7.58 -2.39 -0.02 0.05 16 15 N -0.70 2.73 5.03 -445.42 -2.24 0.49 16 16 C 0.57 1.94 7.75 86.79 0.67 2.61 16 17 O -0.57 -7.07 16.08 -3.88 -0.06 -7.13 16 18 C -0.20 -0.21 5.89 -19.99 -0.12 -0.32 16 19 C 0.15 -0.43 10.71 85.02 0.91 0.48 16 20 N -0.49 0.11 10.35 -194.76 -2.01 -1.90 16 21 C 0.13 -0.26 9.84 84.71 0.83 0.57 16 22 C -0.17 0.16 5.35 -19.81 -0.11 0.05 16 23 C -0.08 0.17 2.82 71.23 0.20 0.37 16 24 O -0.55 -1.09 12.84 -148.98 -1.91 -3.00 16 25 Si 0.78 -3.61 29.91 68.60 2.05 -1.56 16 26 C 0.00 -0.01 9.38 22.73 0.21 0.21 16 27 C -0.12 0.00 5.49 30.59 0.17 0.17 16 28 C -0.12 -0.09 5.49 30.59 0.17 0.08 16 29 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.06 0.59 5.88 -2.39 -0.01 0.57 16 32 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.07 -0.12 8.14 -2.38 -0.02 -0.14 16 35 H 0.06 0.53 5.88 -2.38 -0.01 0.52 16 36 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 38 H 0.42 -1.99 8.71 -92.71 -0.81 -2.80 16 39 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 41 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 43 H 0.42 -4.41 6.67 -92.71 -0.62 -5.03 16 44 H 0.19 -2.04 6.42 -2.91 -0.02 -2.06 16 45 H 0.18 -1.20 4.85 -2.91 -0.01 -1.22 16 46 H 0.13 -0.43 7.96 -2.39 -0.02 -0.44 16 47 H 0.39 -1.52 8.70 -74.05 -0.64 -2.17 16 48 H -0.30 -1.02 7.11 99.48 0.71 -0.32 16 49 H -0.27 0.52 7.01 99.48 0.70 1.22 16 50 H 0.14 0.75 7.74 -2.91 -0.02 0.73 16 51 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 52 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 53 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 54 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 Total: 0.00 -25.49 428.15 -2.13 -27.62 By element: Atomic # 1 Polarization: -13.77 SS G_CDS: -1.10 Total: -14.86 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 6.37 Total: 12.34 kcal Atomic # 7 Polarization: 3.02 SS G_CDS: -7.15 Total: -4.13 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -2.30 Total: -19.41 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.05 Total: -1.56 kcal Total: -25.49 -2.13 -27.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12463208_13287814.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.172 kcal (2) G-P(sol) polarization free energy of solvation -25.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds