Wall clock time and date at job start Sat Mar 6 2021 17:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36413 * 125.80527 * 2 1 4 4 C 1.47374 * 127.19026 * 0.02562 * 3 2 1 5 5 O 1.21612 * 120.00459 * 359.70354 * 4 3 2 6 6 N 1.34775 * 120.00219 * 179.70880 * 4 3 2 7 7 C 1.46500 * 120.00366 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47175 * 34.99887 * 7 6 4 9 9 C 1.53006 * 109.46998 * 154.99756 * 7 6 4 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47592 * 300.00035 * 10 9 7 12 12 H 1.09000 * 109.47140 * 300.00346 * 11 10 9 13 13 N 1.46500 * 109.47204 * 180.02562 * 11 10 9 14 14 C 1.34773 * 119.99955 * 85.00142 * 13 11 10 15 15 O 1.21514 * 120.00212 * 359.97438 * 14 13 11 16 16 O 1.34639 * 120.00114 * 180.02562 * 14 13 11 17 17 C 1.45197 * 117.00299 * 180.02562 * 16 14 13 18 18 C 1.52993 * 109.47317 * 59.99463 * 17 16 14 19 19 C 1.53002 * 109.47120 * 179.97438 * 17 16 14 20 20 C 1.53002 * 109.46676 * 299.99488 * 17 16 14 21 21 C 1.52996 * 109.47165 * 60.00300 * 11 10 9 22 22 C 1.52997 * 109.47204 * 274.99782 * 7 6 4 23 23 C 1.47020 * 105.61314 * 179.74026 * 3 2 1 24 24 C 1.34176 * 105.95886 * 0.26251 * 23 3 2 25 25 C 1.50698 * 125.44051 * 179.97438 * 24 23 3 26 26 O 1.42894 * 109.47119 * 300.00683 * 25 24 23 27 27 Si 1.86293 * 109.47221 * 180.02562 * 25 24 23 28 28 O 1.33661 * 125.79719 * 180.19847 * 2 1 3 29 29 H 1.08999 * 109.47610 * 89.99170 * 1 2 3 30 30 H 1.09002 * 109.47648 * 210.00088 * 1 2 3 31 31 H 1.09003 * 109.46798 * 329.99161 * 1 2 3 32 32 H 0.97001 * 119.99752 * 359.97438 * 6 4 3 33 33 H 1.08993 * 109.46955 * 300.00226 * 9 7 6 34 34 H 1.09000 * 109.47050 * 60.00054 * 9 7 6 35 35 H 1.09000 * 109.47160 * 60.00369 * 10 9 7 36 36 H 1.09002 * 109.46719 * 180.02562 * 10 9 7 37 37 H 0.97001 * 119.99882 * 265.00024 * 13 11 10 38 38 H 1.09000 * 109.47588 * 60.00635 * 18 17 16 39 39 H 1.09005 * 109.47292 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.47086 * 300.00074 * 18 17 16 41 41 H 1.09000 * 109.46935 * 60.00109 * 19 17 16 42 42 H 1.09001 * 109.46811 * 179.97438 * 19 17 16 43 43 H 1.08994 * 109.47462 * 299.99544 * 19 17 16 44 44 H 1.09000 * 109.47323 * 60.00173 * 20 17 16 45 45 H 1.09002 * 109.47148 * 180.02562 * 20 17 16 46 46 H 1.09002 * 109.47232 * 299.99634 * 20 17 16 47 47 H 1.08992 * 109.47534 * 180.02562 * 21 11 10 48 48 H 1.08996 * 109.47134 * 59.99508 * 21 11 10 49 49 H 1.09000 * 109.47140 * 300.00127 * 22 7 6 50 50 H 1.09001 * 109.47230 * 59.99271 * 22 7 6 51 51 H 1.08007 * 127.01624 * 180.23827 * 23 3 2 52 52 H 1.09002 * 109.46801 * 60.00043 * 25 24 23 53 53 H 0.96707 * 113.99780 * 179.97438 * 26 25 24 54 54 H 1.48497 * 110.00005 * 60.00371 * 27 25 24 55 55 H 1.48502 * 110.00210 * 181.32175 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.1063 0.0000 4 6 1.8741 2.5156 0.0005 5 8 0.6891 2.7892 -0.0044 6 7 2.7931 3.5014 0.0064 7 6 2.3647 4.9024 0.0063 8 1 1.4506 5.0028 0.5915 9 6 3.4629 5.7715 0.6226 10 6 3.0156 7.2347 0.6219 11 6 2.7537 7.6873 -0.8159 12 1 3.6679 7.5866 -1.4008 13 7 2.3260 9.0885 -0.8165 14 6 3.2457 10.0737 -0.8108 15 8 4.4295 9.7998 -0.8048 16 8 2.8527 11.3615 -0.8109 17 6 3.8976 12.3696 -0.8052 18 6 4.7707 12.2062 -2.0509 19 6 3.2631 13.7619 -0.8068 20 6 4.7601 12.2031 0.4476 21 6 1.6556 6.8183 -1.4321 22 6 2.1023 5.3554 -1.4313 23 6 3.6849 0.5989 0.0064 24 6 3.5859 -0.7392 0.0037 25 6 4.7458 -1.7013 0.0077 26 8 5.5481 -1.4848 -1.1548 27 14 4.1025 -3.4496 0.0008 28 8 2.2888 -1.0841 -0.0038 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 3.7383 3.2833 0.0106 33 1 3.6498 5.4487 1.6467 34 1 4.3770 5.6711 0.0374 35 1 2.1014 7.3354 1.2069 36 1 3.7981 7.8539 1.0605 37 1 1.3810 9.3072 -0.8209 38 1 4.1564 12.3249 -2.9434 39 1 5.5555 12.9628 -2.0464 40 1 5.2228 11.2144 -2.0502 41 1 2.6409 13.8785 0.0805 42 1 4.0476 14.5186 -0.8021 43 1 2.6490 13.8803 -1.6994 44 1 5.2121 11.2112 0.4483 45 1 5.5443 12.9602 0.4521 46 1 4.1380 12.3196 1.3350 47 1 1.4692 7.1404 -2.4565 48 1 0.7414 6.9190 -0.8472 49 1 3.0164 5.2550 -2.0164 50 1 1.3201 4.7362 -1.8704 51 1 4.5928 1.1838 0.0118 52 1 5.3491 -1.5392 0.9009 53 1 6.3151 -2.0705 -1.2180 54 1 3.2786 -3.6829 -1.2124 55 1 5.2362 -4.4082 0.0369 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12463208_13308374.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:24:01 Heat of formation + Delta-G solvation = -141.689699 kcal Electronic energy + Delta-G solvation = -35642.330226 eV Core-core repulsion = 30840.370706 eV Total energy + Delta-G solvation = -4801.959520 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.208 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.76185 -41.91456 -40.96711 -39.57742 -38.09749 -37.97306 -36.09721 -35.14529 -34.34854 -33.66378 -33.13760 -31.89969 -29.94265 -29.07753 -28.37695 -28.31259 -25.91023 -24.72566 -23.91446 -23.75636 -22.63257 -21.74352 -21.60222 -20.96888 -20.40588 -19.16613 -18.84737 -18.40013 -17.80920 -17.38411 -17.33008 -17.18885 -17.00734 -16.62765 -16.03606 -15.98820 -15.76069 -15.61665 -15.45221 -15.08847 -15.04195 -14.76184 -14.52614 -14.30039 -14.16943 -14.03949 -14.02497 -13.84443 -13.75486 -13.36341 -13.30565 -13.14498 -13.12940 -12.93046 -12.87639 -12.77484 -12.64345 -12.56352 -12.31422 -12.29395 -12.18686 -12.15879 -11.77970 -11.43064 -11.38340 -11.15653 -11.04917 -10.93867 -10.63289 -10.23209 -10.09337 -9.55537 -4.95108 0.22985 0.80963 1.14574 1.17283 1.35932 1.67516 1.75020 1.93520 2.13220 2.26439 3.11613 3.22714 3.50903 3.52360 3.66506 3.73237 3.73582 3.74730 3.78784 3.89076 3.93484 4.06903 4.12305 4.14020 4.29062 4.30143 4.33686 4.42104 4.47020 4.52657 4.59363 4.60170 4.60450 4.66309 4.68493 4.72723 4.75407 4.81193 4.83699 4.86488 4.94204 5.03169 5.07326 5.07695 5.08919 5.13704 5.20459 5.23400 5.24903 5.26119 5.30404 5.41358 5.48835 5.58969 5.91390 6.39306 6.49210 6.51458 7.16845 7.33695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.083 3.917 3 C -0.269 4.269 4 C 0.592 3.408 5 O -0.570 6.570 6 N -0.709 5.709 7 C 0.148 3.852 8 H 0.080 0.920 9 C -0.114 4.114 10 C -0.122 4.122 11 C 0.165 3.835 12 H 0.080 0.920 13 N -0.698 5.698 14 C 0.644 3.356 15 O -0.591 6.591 16 O -0.371 6.371 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.179 4.179 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.147 4.147 24 C -0.024 4.024 25 C -0.037 4.037 26 O -0.554 6.554 27 Si 0.763 3.237 28 O -0.175 6.175 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.411 0.589 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.177 0.823 52 H 0.131 0.869 53 H 0.406 0.594 54 H -0.313 1.313 55 H -0.262 1.262 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -0.517 3.162 3.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 C -0.273 4.273 4 C 0.381 3.619 5 O -0.451 6.451 6 N -0.360 5.360 7 C 0.044 3.956 8 H 0.098 0.902 9 C -0.152 4.152 10 C -0.161 4.161 11 C 0.062 3.938 12 H 0.098 0.902 13 N -0.357 5.357 14 C 0.398 3.602 15 O -0.482 6.482 16 O -0.286 6.286 17 C 0.091 3.909 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.236 4.236 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.166 4.166 24 C -0.072 4.072 25 C -0.146 4.146 26 O -0.366 6.366 27 Si 0.668 3.332 28 O -0.072 6.072 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.248 0.752 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.195 0.805 52 H 0.149 0.851 53 H 0.259 0.741 54 H -0.241 1.241 55 H -0.188 1.188 Dipole moment (debyes) X Y Z Total from point charges 0.786 -0.964 2.645 2.923 hybrid contribution 1.195 0.243 -0.889 1.509 sum 1.981 -0.721 1.756 2.744 Atomic orbital electron populations 1.20717 0.82344 1.05869 1.05028 1.23273 0.94839 0.82883 0.95995 1.21251 0.94086 0.93741 1.18264 1.17280 0.85276 0.84212 0.75148 1.90748 1.17719 1.84445 1.52193 1.45762 1.10060 1.05556 1.74618 1.21030 0.98687 0.79229 0.96650 0.90196 1.21676 0.97901 0.93351 1.02293 1.21829 1.02354 0.95601 0.96317 1.21024 0.98670 0.77062 0.97048 0.90225 1.44830 1.09372 1.04165 1.77374 1.18340 0.84687 0.81321 0.75867 1.90900 1.16808 1.83974 1.56530 1.86314 1.41446 1.14314 1.86485 1.22342 0.85922 0.86176 0.96463 1.22472 1.00506 1.04168 0.96558 1.21892 1.02323 0.91671 1.03629 1.22467 1.00555 1.04184 0.96440 1.21679 0.97958 0.93400 1.02261 1.21789 1.02171 0.95338 0.96649 1.22775 0.96539 0.93542 1.03772 1.21471 0.82302 0.94937 1.08456 1.23951 0.90645 1.07800 0.92225 1.86505 1.43188 1.63257 1.43623 0.93664 0.80668 0.72239 0.86677 1.83650 1.16689 1.35247 1.71644 0.88743 0.87988 0.88083 0.75218 0.89980 0.90235 0.90544 0.91998 0.74758 0.92051 0.89495 0.91708 0.91207 0.88328 0.91251 0.91638 0.89526 0.91992 0.90141 0.89880 0.90884 0.92050 0.80518 0.85150 0.74118 1.24100 1.18760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 9.89 71.24 0.70 0.60 16 2 C 0.08 0.43 7.37 25.26 0.19 0.62 16 3 C -0.27 -1.43 6.31 -18.99 -0.12 -1.55 16 4 C 0.59 3.67 7.78 86.65 0.67 4.35 16 5 O -0.57 -6.63 14.51 -4.07 -0.06 -6.69 16 6 N -0.71 -0.15 5.07 -445.85 -2.26 -2.41 16 7 C 0.15 -0.13 2.46 44.99 0.11 -0.02 16 8 H 0.08 0.19 7.58 -2.39 -0.02 0.17 16 9 C -0.11 0.40 5.39 30.60 0.16 0.56 16 10 C -0.12 0.18 5.49 30.59 0.17 0.35 16 11 C 0.17 -0.14 2.45 44.99 0.11 -0.03 16 12 H 0.08 0.20 7.58 -2.39 -0.02 0.18 16 13 N -0.70 -0.44 5.08 -570.14 -2.90 -3.33 16 14 C 0.64 4.25 8.02 129.79 1.04 5.29 16 15 O -0.59 -6.73 11.54 19.80 0.23 -6.50 16 16 O -0.37 -2.12 9.94 -55.48 -0.55 -2.67 16 17 C 0.13 0.39 1.13 -10.79 -0.01 0.38 16 18 C -0.18 -0.61 8.37 71.98 0.60 0.00 16 19 C -0.14 0.24 8.85 71.98 0.64 0.88 16 20 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 21 C -0.11 0.36 5.39 30.58 0.16 0.52 16 22 C -0.12 0.12 5.49 30.58 0.17 0.28 16 23 C -0.15 -0.29 10.46 23.65 0.25 -0.04 16 24 C -0.02 -0.06 6.24 24.76 0.15 0.09 16 25 C -0.04 0.10 2.97 71.24 0.21 0.32 16 26 O -0.55 0.53 12.84 -148.98 -1.91 -1.38 16 27 Si 0.76 -1.63 32.08 68.60 2.20 0.57 16 28 O -0.17 -0.84 8.89 4.39 0.04 -0.80 16 29 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.10 0.36 6.49 -2.39 -0.02 0.34 16 32 H 0.41 -1.72 7.77 -92.71 -0.72 -2.44 16 33 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.06 0.13 8.14 -2.39 -0.02 0.12 16 37 H 0.42 -1.45 8.71 -92.71 -0.81 -2.26 16 38 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.09 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.06 0.55 5.88 -2.39 -0.01 0.54 16 41 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 45 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 49 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 50 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 51 H 0.18 -0.57 7.74 -2.91 -0.02 -0.59 16 52 H 0.13 -1.21 7.96 -2.39 -0.02 -1.23 16 53 H 0.41 -4.02 8.74 -74.05 -0.65 -4.66 16 54 H -0.31 -2.55 7.11 99.48 0.71 -1.85 16 55 H -0.26 0.14 7.11 99.48 0.71 0.85 16 Total: 0.00 -22.74 439.35 -0.61 -23.35 By element: Atomic # 1 Polarization: -11.58 SS G_CDS: -1.21 Total: -12.80 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.82 Total: 12.66 kcal Atomic # 7 Polarization: -0.58 SS G_CDS: -5.16 Total: -5.74 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -2.26 Total: -18.03 kcal Atomic # 14 Polarization: -1.63 SS G_CDS: 2.20 Total: 0.57 kcal Total: -22.74 -0.61 -23.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12463208_13308374.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.342 kcal (2) G-P(sol) polarization free energy of solvation -22.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds